Gene detail

Detailed information of HS08614 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS08614	G PATCH AND KOW-CONTAINING	chr9	20416579	20423631	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS08614

GCAGATTCTCCCATGTCTGCTCCTTCTGGGGACCAAGAAGAAAGAAAACCCGCGGCGGTGTCGTTTGGTTTCACTAAAACAGTTAGCAAATTTAAACCTACGACTGGTGACGTGATTAAGAAAGATGACAAAGATTATTTGATTGGAATTGACGGAAAAGAATTGCAAAGGTGGGCTTCGTATgctaatgctaacgctaacgtaccggtatcatttaatataacgctaTTGTTATTAGCGTCACGGTTAGCGTGTTAATTCCTCCTTCTGATGGCTAACAGTCAAATGAATATACGTGTGAAGTAGATAGTGACGTTACAAAGGTTGTACGCCTTGTTTTTTTtAATGTTATTGAACATTCGCCTCGCTAACTTCACTCTTGTGTTGCAGTACAAAACCGTCCGACAAGCCCAAAGAGCTCATCATCCCTCTGATCCAGAAGAACCGCTGGCACAGACCGGACCGGGCGGCCCAGGTCGAGGGCGAGGCGAGCGGGGGCAAAACGCCCAAAATCCCCGAAGAAAATGACTCTGTGGAATCTCAGGCTGTCAAGGAGCTCATTGAAGGTATGTACAGTGCACTATAATATGcagtaggggcgagatccccctagcgacgctggcactcagtggcacttgccagtagttgccagcagttgccagtgacacttgccacttgccagcagttgccagcagatgccactactagtcaaaagtgccactactagttaaagtgccactactagtcaaaaagtgccagcagacggagggtcggccgcagtgacgagtctgcgacgatttagtgacaagcttcactgaagtgcccggacagcggaagaaatcactttcatgatcacaaaatggaggaactgcggtttagctagatagatagatagctaaaatagctagatacacagatggatgtgtgtgtatatatataaaagacactaattaatatatatatatattaattagtgtcttttagacactactgacaatatgcaataagatagtgctgtacattactgctgtactatatttaatattgttttgctactactacgtttcacttcgtaatctattacacttatataccatgatattgtaacgtctcggacgttatggcactgatgacacggagacgggacggcgttattaatcctccctttattgggcatccaccaacacagacagcgtgttcctctcagcttagcaggtcgaaagtcaacaacaacggttccgtcaaccacccttaactcccgttttccgacaggttaacccgcctccctctactccgccaatcacaggcacgccccctcgaccagcatgcacggtgccacactttgattgacagccacttcacagggtcgctacaatatattacgaagtgaaacgtagtagaagcaaaacaatattaaatatagtacagcagtaatgtacagcactatcgcatattgtaagtaagtgtctacaaaaagacactaattatatatatatatatatatatatatccatctgtgtatctagctattttagctatctatctatctatcaatctagctaaaccgcagctcctccattctgtgatcatgaaagtgatttcttccgctgtccgggcacttcagtgaagcttgtcactaaatcgtcgcagactcgtcaccgcgccgaccctccgtctgctggcactttttgactagtagtggcactttttaactagtagtggcactttttgactagtagtggcatctgctggcaactgctggcaactgctggcaagtgtcactgagtgccagtgcttacactttagactaacagtggcatctcctccaaggagaatttcatggaggtataacagtatgacatggtaaaaaaattaattatatattttttattattaaagaaaggcgggtacattatacatatcatggtatataagtgttatatattacgaagtgaaacgtagtagtagcaaaacaatattcaatatagtacagcagtattgtacagcaatatcgtattgcatattttaagtaagtctaaaaaaatacattatctatgcaagtctgtggcacttgccacagacttgccactgaggtgccagtgagttgccagtgagttgtcggtgccagtgattgcACTCGCCCTCTCTCATAATATGTGTGTGTGTGTGGGGGGGGtGGAAGGCCCAGGTGATCATAACCCCTCATGCAAAGCTCCTTGTGCATCTCTAACTCCGCCTCGTAGACTCTCGGAGGCAGCTTGAGCTGTGGCAAAACGGCCCTCAGTCAGACATCAACCTGAACCTCGCCATCCCCCTGTTGATGCAAAACAAAGTGCCGGACGGCTTTGAGGATGGAGACCACGTGAAGGTGGATCTACGCCCGGAATCTGTAAGTATGGAGACCAAACACAAGAGTGAAGTTAGCGAGGCGACTGTTCAATAACATaAAAAAACAAGGCGTACAACCTTTGTGTGACGGAAACAGCGGCACAGCGCAGCATGTTGTTCTACTCTGTGCTTGCACGATTAAGATCTATATCTAATACCCCGGTTGAAGAGAAGTGTTTGGACAGTTTTCTCATTTGCGTCTTTGTTATTCCCGTATAATCTCATCAGGGTCTTTCCATTGCAATTATAGTGGACACAAAATAGTGTATTTGTAGTGTAGTGGATGTATTATTCGTTAAGTGCCAGGGGaAATGCAGTGAAGTCATAGATGGTACCCcCCGACAACAGAATTTGAAGAGGAGAGGGAGATTGGATGATTCAAGGGTTTAACAGAGTAATTATTTGAATTAAGTGTTTAATCAATGATTCTACATACACACGCATACATTTCTTTCATATTTTTATGCAAGCGTTCTACTGTTGCCGGCTAGGGTTTGCATATGAATCGCTTGAGAAAGAAATGACTTGCATGCCCCTCGTCAATTGGTAATTTCTTCTGGGATCCGGTGTGAAGATCACTTTAAGATCTCAATGATGGATGCAAGAGGCATTTCAATGAGCATTGGAAAACACTTGACGGTACAAAAAAATTGATAGAATGGCTACTTTGACTCGGATTGAAATTTGAATATCTGAAAGgCTGACGGAGACTTGCATTCAAAACCGCTCGTCTCCGTCAGTTGTTCAGACTTCACAGATCACATAAGCCCCTCGTTTAGCTCTGATAAACATAGAAATGCAGACGGTGGAGTCTTCTTCTTTTCTTGGGTCGTTTGAGCATTTAAATGTCTCTTGATTTTCAAAAAgATGACATCCCTGTATGTGTTCGTCAGTCAACAGAGGCAGACTATGAGAGCATTCCTGTTGCAGCTTATGGACTCGCGATGCTGAAAGGGATGGGCTGGAATAAAGAGGAAGGCATTGGACACACCTTTAAACAGTGAGTAGTTCATTGACGCCTtACTTTACCAcGATTACTCCGAATGTAACGTTATGCTTAACTTTCACGTCGTCCAATCAAGCTAAATATGCTGaacagtctgtagtttcagcttcttaaatgtgaggatttgcttattttttcagttttatatctgagaaatgtttgaatatctttagatttggaatgtaatttggaccaaacaagatatttgaagaactctccttgtgcactcgtaacgtgcaatgagcacattacatgtcatttagctgacgcttttatccaaagcgattcaaccatgagcacttttcaCAATTTATATACATTTCATCTACTAACAATTATTAATATAACAATGAATCAATTACTCGAAAAAACAAAACAATCAACGGACTAATCTATAATTTAAATGAGcGTTGCcGCTCTCGATGAATACTGATCAGGACTTTGACTGTATTTCCATTTTCAATATTGATTCAACTAGTAAAGTGTTTTTCCACATTAACCTGCTATAAATTAGTAACGACAATTGTATAAAACCACTCATTTCAGGACAAATGGCATTGCTTTCTCCATCCTTTTCTGTAACTCAAGTAGCCTCAATTTAAAATACAAGACGAGCCGTGTGCACCTCCAGCCACTTTCACATCCTGCACATGTCcatctctttattcATTAAATTAATTCTGTCGCTCCCCaTCTaCTCAGACACGTGGTGCCGATAGAACACGAGCTCCGTCCAAAAGGTTTGGGTCTTGGAGCCGATCGTTCGGCGATCAAGGACCTGGAGCCCACCAGACACAAGCGCCCCCCCAAGCCAGGCGATGAGAAGGCGAAGGAGGAAGATGAACTCGTGATGGGTCCAGGCGGCTGCGTGCTGGTGGAATCAGGGGCGCATAAAGAACTGTATGGCAAGGTAGCGCTGATCTGAAATGTGTTTGCACCCATATGCATCGACTGTTGACACGCAGTTAACTCCTGGTACAGAAACAAGGAATAGTCCAACTACCTGTTTTATTTCTATTTGTTGTTTTCTCTTAGATGAGTTGTCAAAACCTTCTTTCATGTGCTGCAGATTGAAGGCATTGATGCAGACAACGCTCGGGTTGTGGTGAAGCTGGCCATTGGGGGCAGGTCGGCGACAATCAGCCAGTATGCTATTAAACTGGTTGGGCGCAAGGAATACGACAAAAACTGCAAAGACCTCAGTAAGTAACTCTCAACAAAGAAAATAGAAAAGTTTAACGTTTCTGGGAAATGATCTGGATGCCTTGCTTTGTGTCTGTTTTTTATTTCCAAAAATCTCTCTTCCCACTTTTCATTTTGATGCATTTGTATTATAACCAGTAATGCGGGATGACCGTAGCAATATGATATGATAGAAGTTTCCAGTTGAAggatcacatcttaacccttgtgttgcctttgggtcattttgacccgattcaatatttaaccctcctgtcgccttcgggtcaatttgacccgattcaatgtttaatttcggtgttctttcgggagtcaacaaacaaacataaagtacctcacacttaaacttggaaaacaatattaattctaataattttctggagattttaatagctggggtcatattgacctcaagggtaaaatatgttcgtaaatataaaggtaacaggagggttaaacattgaatcgggtcaaattgacccgaaagcaacacaagggttaaGTGGCCGGCTGTTGTGTGTCGAACTATTTCTGTGCCAAAGTGTTAATAACCAATTTTTATACAATGTATTTTCTAAGCAAAAAAAGCcaaaaaaacctcactggttcttatttctcaaatgtgaatattttctttttttcttagtgttctatgtaagtaaattgaattatctttcaatttgtgacttttgtagaaaaaaacaagcaacttaaattacgtactttgATGGTCTTATTTTCTATTTCTATCATTGAGAAAACAACTGGCAGATTAAAGTATAATTAAACCAATTATAGTTTGAAGCATTAGTTGTGAGGCTCGACTGGCCTTCAGAGGTTGATCCTCTAGTCGGGTGACATTTTAGCCTTCATGAAGGAAAAACAAACAAAATAGCGAATCAGCCACAGCTTTTATTTTTGGTTCTCTAAGCTGTTAAGAGTAAAAACGTAAACATGCAGagTCACAACACTGCAGTCTCTGTTGGCTTGTTTGCCACATTTAACTGGACACCATGCTAACCAGTTTTTTTTCTTCTTGAATCAGGTCGCCTCAGTAAAACCCACaaggagaaagagaaagagaaggagaaagagaaggagaaagagaaagagaaggagaaggagaaggagaaagagaaggagaggcgggaggagaaagagaggcaaagtaatggtgatgaggtgaaacacaagtcttcagaaagagacagaggaACCGACGAGAGGAAGAGGAAACACCGAGAATCCAGTCAAGACAGGTACCCTTCAAGCATAAGATGATTCTTATTGAGAATTTCAGTTCATACATTATTTTTACCGCACTAATTCTCATTTTCGTTTGTTGGTTATTTTTTTATTTTTAGAGTAAATACAGTACACTGAAAATGTTTCTTTCCTCAGAGAGAAACCGCCAGTGAAAGAGGCCCGACGACCACCGGCTCCCCCCTCCTGGCTCCAGAGGGACTTGAAAGTTCGCTTTATAGACAAATCTTTCAAGGGGGGCAGGTACTACAACTCAAAGGTACGCCACCTACATATTGCATCATCTTCACAGCCCCTTTTTTTGTATTAAACTACTCACGCaTCCTTTGGGTCATTTAATTCAAATGTTAGAATCAAGTGTTTTTAGACCAGGGAATTGTTTGAAATGATGGAACTCACCAGGTAAAATATATATAAATATAAAAATGTTAATTTATTCATATATTTAATTTTATGACGTGGATATTTAAAAAAAATATTTTTTGATGAATAAATCACCACTGAAATAGGAATGGTCAAAACATACCATTAAAATGTTGCCAGTAATGCGGTCCAGTCACAGAAAAGCAATGAGATATCCCACTATATATATATATTTAGCTGCAATGTTTAAAAACATGTTGGGTTCTTATTTTAGCCGTTAACATTAGTCTTGTTTCCTTtTAGATGTGTGTGGAGGATGTTCTGGCACCAGCTATCTGTGTGTGTCGAACCGACGAGGGCAGACTGATAGACGGTGAGTCATTGGCGTCCTCTCGTGTTAGTTTATCAGTTCCTTCATGACGGATTTCACAAATACATTAGTAACATTTAATATCGGCTGACCACCATCCCTGAATGTTGCTTCTGTAATTGCTATAAAAATGTTTGACGAACCCACGGTTTCTTATTTTGAGGGCAGATGTGAAGCAGAACATGCTGGAAACCATCATTCCTAAAAGCGAGAATGATTCTATAATGGTTGTACTGGGCGAGCACAAAGGACAGGTAAGCGAAGGATCGTCTTTCCTGCAGGATGCAGGCTCAGGTTTGTGCCGTGACTAATCGGTGTGCGATTGTTTGTTCAGGTCGGCCGAATTCTCCAACGGGACAAGAACAAATGCCGGGCGACGGTCCAGCTCGACGGACACGACGAGAAATTGTTCACTCTGGATTACGACACCATTTGTCAGTATGTGGGAGCAGAAGACCGCGCAGATTCTCCCATGTCTGCTCCTTCTGGGGACCAAGAAGAAAGAAAACCCGCGGCGGTGTCGTTTGGTTTCACTAAAACAGTTAGCAAATTTAAACCTACGACTGGTGACGTGATTAAGAAAGATGACAAAGATTATTTGATTGGAATTGACGGAAAAGAATTGCAAAGTACAAAACCGTCCGACAAGCCCAAAGAGCTCATCATCCCTCTGATCCAGAAGAACCGCTGGCACAGACCGGACCGGGCGGCCCAGGTCGAGGGCGAGGCGAGCGGGGGCAAAACGCCCAAAATCCCCGAAGAAAATGACTCTGTGGAATCTCAGGCTGTCAAGGAGCTCATTGAAGACTCTCGGAGGCAGCTTGAGCTGTGGCAAAACGGCCCTCAGTCAGACATCAACCTGAACCTCGCCATCCCCCTGTTGATGCAAAACAAAGTGCCGGACGGCTTTGAGGATGGAGACCACGTGAAGGTGGATCTACGCCCGGAATCTTCAACAGAGGCAGACTATGAGAGCATTCCTGTTGCAGCTTATGGACTCGCGATGCTGAAAGGGATGGGCTGGAATAAAGAGGAAGGCATTGGACACACCTTTAAACAACACGTGGTGCCGATAGAACACGAGCTCCGTCCAAAAGGTTTGGGTCTTGGAGCCGATCGTTCGGCGATCAAGGACCTGGAGCCCACCAGACACAAGCGCCCCCCCAAGCCAGGCGATGAGAAGGCGAAGGAGGAAGATGAACTCGTGATGGGTCCAGGCGGCTGCGTGCTGGTGGAATCAGGGGCGCATAAAGAACTGTATGGCAAGATTGAAGGCATTGATGCAGACAACGCTCGGGTTGTGGTGAAGCTGGCCATTGGGGGCAGGTCGGCGACAATCAGCCAGTATGCTATTAAACTGGTTGGGCGCAAGGAATACGACAAAAACTGCAAAGACCTCAGTCGCCTCAGTAAAACCCACaaggagaaagagaaagagaaggagaaagagaaggagaaagagaaagagaaggagaaggagaaggagaaagagaaggagaggcgggaggagaaagagaggcaaagtaatggtgatgaggtgaaacacaagtcttcagaaagagacagaggaACCGACGAGAGGAAGAGGAAACACCGAGAATCCAGTCAAGACAGAGAGAAACCGCCAGTGAAAGAGGCCCGACGACCACCGGCTCCCCCCTCCTGGCTCCAGAGGGACTTGAAAGTTCGCTTTATAGACAAATCTTTCAAGGGGGGCAGGTACTACAACTCAAAGATGTGTGTGGAGGATGTTCTGGCACCAGCTATCTGTGTGTGTCGAACCGACGAGGGCAGACTGATAGACGATGTGAAGCAGAACATGCTGGAAACCATCATTCCTAAAAGCGAGAATGATTCTATAATGGTTGTACTGGGCGAGCACAAAGGACAGGTCGGCCGAATTCTCCAACGGGACAAGAACAAATGCCGGGCGACGGTCCAGCTCGACGGACACGACGAGAAATTGTTCACTCTGGATTACGACACCATTTGTCAGTATGTGGGAGCAGAAGACCGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467	KOW	KOW motif	Family	Interproscan
PF12656	G-patch_2	G-patch domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR005824	Domain	KOW	Interproscan
IPR005825	Conserved_site	Large ribosomal subunit protein uL24, conserved site	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR026822	Domain	Spp2/MOS2, G-patch domain	Interproscan
IPR041993	Domain	G-patch domain and KOW motifs-containing protein, KOW 1	Interproscan
IPR041994	Domain	G-patch domain and KOW motifs-containing protein, KOW 2	Interproscan
IPR045166	Family	Pre-mRNA-splicing factor Spp2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15818	G PATCH AND KOW-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-