Gene detail

Detailed information of HS07639 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS07639	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	chr8	18173137	18179734	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS07639

ATGGCCGGTAGAGGAGGAAAACAGAGTCGGTCGGGCGCTGGCCTGTCGGGCAGAAAGGGTGCCGACGAGCAGGAGGAAGAGGAGCAGCCGCTGCAGGCTGTCTTAGTCGCGGACAGCTTCAACCGGAGGTTTTTtCCGGTGACCAAAGAtCAGCCGAGGGCTCTGCTGCCGCTGGGCAACGTCGCCATGATCGACTACACGTTGGAGTTcCTCACGTCCACCGGGGTGCAGGAGACGTTCGTCTTCTGCTGCTGGATGGCCAGTGaaatcaaggagcacctgctGAAGTCAAAGTGGTGCCGACCCACCTCTCCGAACACGGTCCACATCATCACCTCGGAGCTGTACCGCTCCCTCGGGGACGTGCTGCGCGACGTGGACGCCAAGTCTCTCTTGCGGTCGGACTTCGTGCTGGTCTACGGAGATGTGGTCTCGAATATCGACATCGGTCCGGCGCTGCACGAGCACAGGTATCGTCGAAAGATGGAGAAGAACATATCGGTGATGACGATGGTCTTCAAGGAATCCTCGCCGGGCCACAAGTCGCGCTGCGAGGAGGATGACGTCATTGTTGCTATGGACAGCAGGAGCCAGCGGATCTTACACTACGAGAAGACCCACGGGCTGAAGAGGCTGCAGTTCCCCATGAACATCTTTCACAACGGAAGCGACGAGTTTGAAATCAGACACGACCTCCTGGACTGTCACATCAGCATCTGCTCCCCGCAGGTTGCTGAGCTCTTCACCGACAACTTCGACTACCAGACGAGGAACGACTTCGTCAGAGGGATGTTGGTCAACGAGGAGATCATGGGCAACCAGATACACATGCACGTCACCAAGGACGGTTACGGCGTCCGCGTGTCCAACCTCCTCATGTACGACTCGGTGTCGTCGGACCTCGTGCGGCGGTGGGTCTACCCGCTCACCCCCGAGGCGAACTTCATCGACCAGCAGGGACGGAGCTGCACGTATTCGCGCCACAACGTCTACCGAGGGTCCGGAGTCAGCCTGGGCCACGGCAGCCAGATGGAGGAGAACGTCCTCATCGGCTCCGACACCAGCATCGGCGCCAACTGTTACATTTATAACAGCGTCATCGGTAACAACTGCACCATAGGGGACAATGTGACCCTGGACCACGCCTACATCTGGAGCAACGTTCACATTGCCAGCAATGTGGCGATCAACCAGTCTCTGGTCTGCGACAATGCAGAGATCAAAGAAGGCGTGAAGCTGAACAAACAGTGTGTGGTGGCGTATAACGTGGTTATTGGACCCAACACCTCTCTACCCGAGGGCACCGTGGTGTCCATGCACCATCCGGACGAAGAGGAAGAGGAGGATGACGATCAGTTCCTGAGTGACGACGGCGCAGTTGGTCACAGCAAAGACAAAACCAAACTGAAAGCGTTTAACCCGGCGGAGGTCGGGGCGAATGGGAAAGGCTACATCTGGAAGGCCGGCAGTCTGGACGACACGGAGGGCGAAGAGCTGCTGCAGGGCCTCTGGGGTTTGGTGTTGAACCCGGACCCCGAGAGCGAAAGTGAGGACAGCGAGCCCGATGACCCCGACGACCTCGTGATCCCCTCCCCCGAGATGGATGATGTCAATGTCTTCCAGATGGAGGTGCTCGGGACTCTGCAGAGAGGGTTGGATGAAAACATCAGCTGCGACAATCTCGTGCTTGAGATCAACTCTCTCaaGTATGCCTACAACATCTGTCTGAAAGAGGTGATGCAGATTTTAATGCGCGTGGTGCTGGAGTACCCCTTCCAGCAGCAGGGCCCTCAGCTCAcCCCGTCGCAATACGTCGCTCTGCTGCTGCCGTTGCTGAAGAAGTGGGCGCCGGTGTTTAAGAACTACGTGAAGAGGGCGCAGGACCATCTGGACTGCCTGTCGGCCTTCGAGGAGCACTTCATGGAGCAGGAGAGCCACTGGGCGGCGATGGTCAAGATCCTGATGAACATGTACCAGCTGGAGATCCTGGAGGAGGAGACGATACTCCGCTGGTTCTCGCAGGAAGCCTCCACCGACAAGAGCAGGCAGCTCCGCAAGAACCAGGGGCTACAGAAGTTCATCCAGTGGCTGAAGGAGGCCGAGGAGTCATCAGAGGAGGAAGGGAAG

Transcript

HS07639

ATGGCCGGTAGAGGAGGAAAACAGAGTCGGTCGGGCGCTGGCCTGTCGGGCAGAAAGGGTGCCGACGAGCAGGAGGAAGAGGAGCAGCCGCTGCAGGCTGTCTTAGTCGCGGACAGCTTCAACCGGAGGTTTTTtCCGGTGACCAAAGAtCAGCCGAGGGTAGGCATCAAGCTAGGCTAACGGGGTGCTACGCTAACTCACGTCCATGCTGTAAACAGTGACAGGGCTGCACCGACACCGAGGGAACCCACTGAGCCCTCAGTCGAGCGGCTGGGTTGGTGTTGTTTAACAGTGCGCGTGGGGGTCTTAACAGCTACtcAaAGTTCCACTTCTGACATCTGTCACCCCCCCCCATGACGACAGGCTCTGCTGCCGCTGGGCAACGTCGCCATGATCGACTACACGTTGGAGTTcCTCACGTCCACCGGGGTGCAGGAGACGTTCGTCTTCTGCTGCTGGATGGCCAGTGaaatcaaggagcacctgctgtgagtttacactatctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcatcatcatcctcatcagtgTCGGATGAAGTGACTTGAATGTCTCTTGACAGGAAGTCAAAGTGGTGCCGACCCACCTCTCCGAACACGGTCCACATCATCACCTCGGAGCTGTACCGCTCCCTCGGGGACGTGCTGCGCGACGTGGACGCCAAGTCTCTCTTGCGGTCGGACTTCGTGCTGGTCTACGGAGATGTGGTCTCGAATATCGACATCGGTCCGGCGCTGCACGAGCACAGGTAAGAGACGAGAAGTCCGcAGAGACCGTCTCCATCTGTGCTACCGTACCACCGACGGCCGTTTTTaTCTCGTGCGCAGGTATCGTCGAAAGATGGAGAAGAACATATCGGTGATGACGATGGTCTTCAAGGAATCCTCGCCGGGCCACAAGTCGCGCTGCGAGGAGGATGACGTCATTGTTGCTATGGACAGCAGGAGCCAGCGGATCTTACACTACGAGAAGACCCACGGGCTGAAGAGGCTGCAGTTCCCCATGGTGGGAGGAGGGGCACATTTCACCACATCTTCAACGTGCTCGgcctgtttttaccttcgccttgaaaatgcggaaggttatgttttgatcgccgtgtatttatttatttgtatgcgtgttactcgcataactcaaaaagtattaaaccgaatcgcatgcaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcgatcggatcaaaggtcaaggtcatgaaaaggtcaacatctttttaccatagcacggtcaatgtttatccaattggcatgcaacgaatgccaacatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcgctctaccgagtgcccgttctagtttttagatgTTTTGAGATTGCCGTTTGACCGTCgctcCCGATTTGTCTTCGCAGAACATCTTTCACAACGGAAGCGACGAGTTTGAAATCAGACACGACCTCCTGGACTGTCACATCAGCATCTGCTCCCCGCAGGTCGGTTACAGCACACAGCCGGGAGCGGTGGAGCGTTAGTGACGGAGGTGACGAGCGTCGGTCTCTTTCAGGTTGCTGAGCTCTTCACCGACAACTTCGACTACCAGACGAGGAACGACTTCGTCAGAGGGATGTTGGTCAACGAGGAGGTACGCCGCAGCCACGGCCCCGTTTCCCCATTTTCATTTGGAATCACGTAATTCTGCAGACGCCATTCAGAGCGTGACTGATTCTGTTTTAGATCATGGGCAACCAGATACACATGCACGTCACCAAGGACGGTTACGGCGTCCGCGTGTCCAACCTCCTCATGTACGACTCGGTGTCGTCGGACCTCGTGCGGCGGTGGGTCTACCCGCTCACCCCCGAGGCGAACTTCATCGACCAGCAGGGACGGAGCTGCACGTATTCGCGCCACAACGTCTACCGAGGGTCCGGAGTCAGCCTGGGCCACGGCAGCCAGATGGAGGAGAACGTCCTCATCGGCTCCGACACCAGCATCGGCGCCAACTGTTACATTTATAACAGCGTCATCGGTAACAACTGCACCATAGGTGAGCTCCTAACCGGCAAGGTCTGAAAACTACAAGCACGTtGCGCAACGCGTGTTAACGGCCCCCTGTTGTTTGTGTGTCAGGGGACAATGTGACCCTGGACCACGCCTACATCTGGAGCAACGTTCACATTGCCAGCAATGTGGCGATCAACCAGTCTCTGGTCTGCGACAATGCAGAGATCAAAGAAGGCGTGAAGCTGAACAAACAGTGTGTGGTGGCGTATAACGTAAGCGACGCATGGTCGTCTTTTATTCTTCATGTCAGTGAAAGCTGATCGATCAAATAACGTTCCATGCAGATGAAATGACATTTCAACTCTTTGCTCAAACCCTTTCGATGCCTCACCTGACACGGCAACTCCTCAAGTGCCTTTAGTTCAAATGTAACTAGAACAACATTACGAGGACATTaacatttgaaaacttatttttccctcaaaagctacagaaaacaactatatatatatataaatgtatatatatatgtgtggatataaatgtatgtgtatacaggactgtctcagaaaattagaatattgtgatgaagttctttattttctgcaatgcaattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttccagcttaagaaaactcaaatatcctatctctaaatattagaatatcatgaaaaagtatactagtagggtattaaacaaatcacttgaattgtctaattaactcgaaacacctgcaagggtttcctgagacttgacaaacactcagctgttataaatctttttttaaacttggtctgaggaaatattaaaattttatgagataggattttagagttttcttaagctgtaagccataatcagcaatattaaaagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgtttttttaattgcattacagaaaataaagaacttcatcacaatattctaattttctgagacagtcctgtatatatatatatatttttgtgtgtatatatatgtatatatgtgtgtgtatatatatatatattagggctgtcaatcgatttaaaaaaattatctaattaatcgcacattttgaaattcattaatcgcgattaaaagtatttttttcttctaaagacgaaatcttctaaatgaacgagtaatcccttcagacacttgtttaattgtattcttttttaaagataaaacttcacacagagctgtgttttcaaagaggctcctacctataaagtatttttttcttctagagactaaatcttctaaatgaacgagtaatcccttcagacacttgtttaattgtattctttttttaaagacaaaacttcacacagagctgtgttttcaaagaggctcctacatataaagtgccagtgaggtatttaatatcgtggatgataaatagtttcttcagtgaaacattcagattagtaagaaaaggtgtatttgagaccccattggtcctgtcatctttaacattgaacaacagcagaacaagtggccttggtaaactcactgacattcaattatgtcacgttaaccctctggaggctgggctcatttcctcgattttacaaaaaaatgtaaattcaccttttaaaggcttttgcatatgacacatcccagtgtttcccccaccattctatcagCATATATTcagcatgtcattctgtctctacgtgtcgttcactcttctcggctctccgtctcgcgcgccgcagagctccatgccggcgtgtctgcgcgcgcatcggggtggagcaacaacaaaaagtcccctgcaccttccgccccgcgtcaccgacacgtcgccctctgcttctctgtgaatatcgaggagcagacgggaggaaggaggcggactgccgcggcttgacactcagaggagtgaaacaacttcaacgacaccggaagtaaacaaagttgcgttaattgcgctaaaatattttagtgcgttaatcgcggccaaattaatcgcatagattaacgcgttaacgctgacagccctagtatatatatattggtatatatatgtgtgtatatatattatatatgtgtgtgtgtatatatagtatatatattatatatatatatgtgtgtgtttgtatatatatgtatgtgtgtgtgtatatatatatacatgtgtgtatgtatgtgtgtgtatatatatgtacatacatatatatacatgtgtatattactgaaattgctgtcaatacacacacacacacacacactttctatctccatcTCGTCACTTCATTTGCCGGGGACTGTCTTCAAGGTGGTTATTGGACCCAACACCTCTCTACCCGAGGGCACCGTGGTGTCCATGCACCATCCGGACGAAGAGGAAGAGGAGGATGACGATCAGTTCCTGAGTGACGACGGCGCAGTTGGTCACAGCAAAGACAAAACCAAACTGAAAGGTGTGTATGGAGTGTGTACTGACGCGCGCTAGCGTGATACGCAGAGCGGTGACACGTGTTGCGTGGTAACGAGCGGTTGTCCTTCGGCGCTCCAGCGTTTAACCCGGCGGAGGTCGGGGCGAATGGGAAAGGCTACATCTGGAAGGCCGGCAGTCTGGACGACACGGAGGGCGAAGAGCTGCTGCAGGGCCTCTGGGGTAGGACAGCAGCGCGGCTCGTTTCCAATGGCCAGTCATCCATTTGGCCCGCGTCCCAGCAGCCTGCCGTTTGTTTCCTGGGCAACAGGTTTGGTGTTGAACCCGGACCCCGAGAGCGAAAGTGAGGACAGCGAGCCCGATGACCCCGACGACCTCGTGATCCCCTCCCCCGAGATGGATGATGTCAATGGTGAGCGAGTCCGGTCTGTGGAACTGCATGACTGCCCCCTACTGGCCGCAAGAGACAAAACGACACAACCAGCGATCATCACATGACTACGATCACTCTGATTACCTCAGGATAATAATATATAAACACAATGAAATGTATTAATCACTTCAGGGATGCAACTGACTATCATTTGCATCACAGATTCGATCATGTGATTCTGAGGTGCGTCGTCCTCTCTGAGGAAGTGTCTCGCACCGCACGAtgtaattaccttcgcattgaaaatgtggaaggtaatgttttgatcgccgtgtatttgtatgcgtgcgtgagtgttattcgcataactcaaaaagtattaaaccgaatcgcatgaaatttggggggatgattggttattatccggggaccatttgattagattttgggatcgatcggtcaaagtcatgaaaaggtcaacatcttctttttaccatagcctttttgatttttCTTTTTTGATGCTTGAAGACTTCAGCCTCTCTGTTGTGTGTTTGAGACGCCTTCCTCTCTGACTCGTGTCTGTTGGTCCGTCCGTGTGCAGTCTTCCAGATGGAGGTGCTCGGGACTCTGCAGAGAGGGTTGGATGAAAACATCAGCTGCGACAATCTCGTGCTTGAGATCAACTCTCTCaagtaaggaaggaaagaaagaaagaaagaaagtaggaaggaaagTGGCTGTTTTTCGCATACTCAGTTCTCTCTCTCTCCAGGTATGCCTACAACATCTGTCTGAAAGAGGTGATGCAGATTTTAATGCGCGTGGTGCTGGAGTACCCCTTCCAGCAGCAGGGCCCTCAGCTCAcCCCGTCGCAATACGTCGCTCTGCTGCTGCCGGTAAATATATTGTGTGTGTGAGAGACGGTGGAAGTAAAGATTCTCAATTTTCCACTTGCACTTTTTAATCTTTGTTCTAACTCGCAGTTGCTGAAGAAGTGGGCGCCGGTGTTTAAGAACTACGTGAAGAGGGCGCAGGACCATCTGGACTGCCTGTCGGCCTTCGAGGAGCACTTCATGGAGCAGGAGAGCCACTGGGCGGCGATGGTCAAGGTCAGGGTCAAATCTACGCCCCCCATTCAGCAACGCTGTGTCACGGGCAAAGTATTCAGCCGCCTGGACTGTACCTGGTGCTGAGGATGCTGTGGGTGTtCCttCCCCCCTCCCAGATCCTGATGAACATGTACCAGCTGGAGATCCTGGAGGAGGAGACGATACTCCGCTGGTTCTCGCAGGAAGCCTCCACCGACAAGAGCAGGCAGCTCCGCAAGAACCAGGGGGTGGGTACCGGGAGAGCTGGGTCACACGGGGTGCCATCTGTGACATCTCAGTTATGCAATACATTGTGTGATACAATGCGTTAGGAAATGTAGAGGAAGAACATATTGAATCCTATTTAAAAAAAATATTTAAACACCAGCAGGTGTAACTTACAGTGTAACTTGTTCGTGGTTACAGAAGTTTTCTCACCCCCCTCGTCGCTGTCTTGTTTATCTCCAACAGCTACAGAAGTTCATCCAGTGGCTGAAGGAGGCCGAGGAGTCATCAGAGGAGGAAGGGAAGATGGCCGGTAGAGGAGGAAAACAGAGTCGGTCGGGCGCTGGCCTGTCGGGCAGAAAGGGTGCCGACGAGCAGGAGGAAGAGGAGCAGCCGCTGCAGGCTGTCTTAGTCGCGGACAGCTTCAACCGGAGGTTTTTtCCGGTGACCAAAGAtCAGCCGAGGGCTCTGCTGCCGCTGGGCAACGTCGCCATGATCGACTACACGTTGGAGTTcCTCACGTCCACCGGGGTGCAGGAGACGTTCGTCTTCTGCTGCTGGATGGCCAGTGaaatcaaggagcacctgctGAAGTCAAAGTGGTGCCGACCCACCTCTCCGAACACGGTCCACATCATCACCTCGGAGCTGTACCGCTCCCTCGGGGACGTGCTGCGCGACGTGGACGCCAAGTCTCTCTTGCGGTCGGACTTCGTGCTGGTCTACGGAGATGTGGTCTCGAATATCGACATCGGTCCGGCGCTGCACGAGCACAGGTATCGTCGAAAGATGGAGAAGAACATATCGGTGATGACGATGGTCTTCAAGGAATCCTCGCCGGGCCACAAGTCGCGCTGCGAGGAGGATGACGTCATTGTTGCTATGGACAGCAGGAGCCAGCGGATCTTACACTACGAGAAGACCCACGGGCTGAAGAGGCTGCAGTTCCCCATGAACATCTTTCACAACGGAAGCGACGAGTTTGAAATCAGACACGACCTCCTGGACTGTCACATCAGCATCTGCTCCCCGCAGGTTGCTGAGCTCTTCACCGACAACTTCGACTACCAGACGAGGAACGACTTCGTCAGAGGGATGTTGGTCAACGAGGAGATCATGGGCAACCAGATACACATGCACGTCACCAAGGACGGTTACGGCGTCCGCGTGTCCAACCTCCTCATGTACGACTCGGTGTCGTCGGACCTCGTGCGGCGGTGGGTCTACCCGCTCACCCCCGAGGCGAACTTCATCGACCAGCAGGGACGGAGCTGCACGTATTCGCGCCACAACGTCTACCGAGGGTCCGGAGTCAGCCTGGGCCACGGCAGCCAGATGGAGGAGAACGTCCTCATCGGCTCCGACACCAGCATCGGCGCCAACTGTTACATTTATAACAGCGTCATCGGTAACAACTGCACCATAGGGGACAATGTGACCCTGGACCACGCCTACATCTGGAGCAACGTTCACATTGCCAGCAATGTGGCGATCAACCAGTCTCTGGTCTGCGACAATGCAGAGATCAAAGAAGGCGTGAAGCTGAACAAACAGTGTGTGGTGGCGTATAACGTGGTTATTGGACCCAACACCTCTCTACCCGAGGGCACCGTGGTGTCCATGCACCATCCGGACGAAGAGGAAGAGGAGGATGACGATCAGTTCCTGAGTGACGACGGCGCAGTTGGTCACAGCAAAGACAAAACCAAACTGAAAGCGTTTAACCCGGCGGAGGTCGGGGCGAATGGGAAAGGCTACATCTGGAAGGCCGGCAGTCTGGACGACACGGAGGGCGAAGAGCTGCTGCAGGGCCTCTGGGGTTTGGTGTTGAACCCGGACCCCGAGAGCGAAAGTGAGGACAGCGAGCCCGATGACCCCGACGACCTCGTGATCCCCTCCCCCGAGATGGATGATGTCAATGTCTTCCAGATGGAGGTGCTCGGGACTCTGCAGAGAGGGTTGGATGAAAACATCAGCTGCGACAATCTCGTGCTTGAGATCAACTCTCTCaaGTATGCCTACAACATCTGTCTGAAAGAGGTGATGCAGATTTTAATGCGCGTGGTGCTGGAGTACCCCTTCCAGCAGCAGGGCCCTCAGCTCAcCCCGTCGCAATACGTCGCTCTGCTGCTGCCGTTGCTGAAGAAGTGGGCGCCGGTGTTTAAGAACTACGTGAAGAGGGCGCAGGACCATCTGGACTGCCTGTCGGCCTTCGAGGAGCACTTCATGGAGCAGGAGAGCCACTGGGCGGCGATGGTCAAGATCCTGATGAACATGTACCAGCTGGAGATCCTGGAGGAGGAGACGATACTCCGCTGGTTCTCGCAGGAAGCCTCCACCGACAAGAGCAGGCAGCTCCGCAAGAACCAGGGGCTACAGAAGTTCATCCAGTGGCTGAAGGAGGCCGAGGAGTCATCAGAGGAGGAAGGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00132	Hexapep	Bacterial transferase hexapeptide (six repeats)	Repeat	Interproscan
PF02020	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001451	Repeat	Hexapeptide repeat	Interproscan
IPR003307	Domain	W2 domain	Interproscan
IPR011004	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR035543	Domain	Translation initiation factor eIF-2B subunit epsilon, N-terminal	Interproscan
IPR044123	Domain	Translation initiation factor eIF-2B subunit epsilon, W2 domain	Interproscan
IPR051956	Family	eIF2B Complex Subunit Epsilon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005851	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-