Gene detail

Detailed information of HS06921 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS06921	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	chr8	1560985	1567336	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS06921

CCCTCCAGTGTCAGCGCCATGCTTGCCCGGCTGGCCTCGTGTTCTCGCTCGCCATCCAGACTCCGTCAGTCCAGCGTCTGTCCGGTGTCCATCAGAGCGTACGCTCCGGCTAAATTCCCACGTCcTCATGGCAAGTCCCTCGCCCACCGCAGTGAGCTGAAGCAGGCCAAaCGCATCGTGGTGAAGCTGGGCAGCGCCGTGGTGACGCGGGACGAGTGCGGCCTGGCaCTGGGGCGGCTGGCCTCCATCGTAGAGCAGGTcACGCCGTTCATGTCGCCCAGGCtgaaatactccgtgttaaacttcaatagcatatcgcagggctctcaagttttgaagacagattggctgataagtggctcctcacagcagaactcaggttgtgggaatcgacagcagaatgtacagttcattgagttggtctccctgaaacacctcagccagcaaaccagtcattcaggcattaccactaactatatctccctccagtctcTACATTTCTGTCCCCTTCTGCAGATTCTGGTCACCAACCTCGATTTCCACGACGAGCAGAAGCGCCGCAACCTGAACAGCACGCTGCACGAGCTGCTGCGGATGAACATcGTGCCCATCATCAACACCAACGACGCCGTGGTGCCGCCCCCCgTTCCCAACAGCGACCTGCAGGGGGGGAATGTGATAAGCATCAAGGACAACGACAGCTTGGCTGCTCGGCTGGCCGTTGAGATGAAAGCAGACCTCCTCATCGCCCTGTCTGATGTCGAAGGCTTATACGACCGGCCCCCGGGGACAGACGATGCCAAACTCATCGATATATTCTATCCCGGAGACCAGCAGTCGATCACCTACGGCACCAaGTCCAGAGTCGGCATCGGCGGCATGGAAGCCAAGGTGAAAGCGGCGCTCTGGGCTCTCCAGGGCGGGACGTCGGTCGTCATCGCCAACGGCACACACCCGAAGGTCACCGGCCACGTCATCACGGACATCGTGGAGGGGAAGAAAGTCGGCACCTTCTTCTCTGAAGTGAAACCTGCAGGTCCGACCGTGGAGCAGCAGGCGGAGATGGCTCGCCATGCAGGCCGGGCTCTGGCCTCCCTGGACCCCGAACAGAGAGGGGAGATCATCTGCTCGCTTGCTGACCTGCTGACGGAGAAGAAAGATGAGATCCTCAGTGCCAACAAGAGAGACATGGAGTTAGCAaccacaTCAGATCAGCAGCGTTCTCCTCTCGTTGCTGACGGCACATCGATGTTCCATCCGAGGATCTCCAGAGCGTTGCGTTGTGTTTTCTTCCCGTTCGCAGGTCGTCTCTCTCAGCCTCTGATCGACCGTCTGAGTCTCTCGTCTGCGAAGCTGAACGGCCTCGCCATCGGCCTCCGTCAGCTCGCCGTGTCGTCCAGGCATAGCGTGGGTCGGGTTGTGAGGAGGACCAGGGTGGCCAACAACCTGGAGCTGGAGCAGATCACCGTCCCCATCGGGGTCCTGCTGGTCATCTTTGAGTCGCGTCCCGATTGCCTCCCGCAGGGCGGTAAAGCCGGCGTCCGGCTGTCGACGCGAGGCCTTCGCTCAGCGGGGGCTGGGGGACTCACCCGGGTCACTGAAGGTCACGTTGACGTGCTGGATGTTGCGTTTCAGGTGTCGGCTCTGGCTATTGCCAGTGGAAATGCTCTGCTGCTGAAGGGGGGTAAAGAAGCGTCCAACACCAATAGAATCCTACATCAACTCACACAGGAAGCGCTCTCCAGCCACGGAGTGGCGGACGCCGTTCAGCTGGTGAGCACCCGGGAGGAAGTGGAGGATCTGTGCCGACTGGACAAGCTGATCGACCTGATCATCCCGAGGGGCTCGTCCCAGCTGGTCCGGGACATCCAGAGGGCGGCGAAGGGCATTCCCGTCCTGGGCCACAGCGAGGGCGTCTGCCACGTCTACCTGGACAACGAAGCCAGCATCGACAAAGCCATCGACATCGGTGTGTGGGCGAGCGTTCACGATCCTGCACTCATT

Transcript

HS06921

CCCTCCAGTGTCAGCGCCATGCTTGCCCGGCTGGCCTCGTGTTCTCGCTCGCCATCCAGACTCCGTCAGTCCAGCGTCTGTCCGGTGTCCATCAGAGCGTACGCTCCGGCTAAATGTGAGTCCCGGCTGAGaGGGGCGCCTTGCTGCTCTGCCGATGTGTAATTAAAGGTGTCTTTGTTGTTGCCTGCAGTCCCACGTCcTCATGGCAAGTCCCTCGCCCACCGCAGTGAGCTGAAGCAGGCCAAaCGCATCGTGGTGAAGCTGGGCAGCGCCGTGGTGACGCGGGACGAGTGCGGCCTGGCaCTGGGGCGGCTGGCCTCCATCGTAGAGCAGGTcACGCCGTTCATGTCGCCCAGGCGTGAGAGACACTGCGGCTGCGTGAAGACGGCGCCAcgtacctgcacactcgtcacctttcggtgaaattcaccgttttgaaatcaaaataggtcgtccgcgtgaatcgtgtagatccgaagagattttgttttgggggggggggggggggcgttgagactgcagtgaggggcggagaaaatgcgaagtggtgctctttgcaataaaacatctttgatggggcgtgtgagtctcggccaatcagcgttcagatgtcctcagcgtttgggggttagcgtttgcttgaatgttagccgctacatctactgctgtcacgctgcacggcggatcgatgctaacaaggtacccgcacgttaaaaacgatgtgaCccCCCCCCCCCcTTCACCCCTCcagggctccagactaactttttttactaggagcacagtggcccccaacttaaaatgttaggggcgcaagcagaatatttaggggcgcacactataaatcgacttgcaaagtgttcttatttggcaatgaaatactccgtgttaaacttcaatagcatatcgcagggctctcaagttttgaagacaggcaagagtgacgtttccatcagcagcaccccccccccccacccccgcagaacgcaattttcggatattagtcagtcgcgcgcaattccaggatgctttattttcattggttgctggattgaatcttacccagattcgggttgttttctgattggctgttgtgtagcccatttcttttttttgattggctgataagtggctcctcacagcagaactcaggggagcgcttgattcctccacggtgagggcagcgcggctcatgttggcgcgctgcggcacattaaaacattaaatagccaagagtttttttcagcgtgagaaatacgatgtgtggcgggagtgcgtgacgtaagaccgaaatgcgtgagtctcacgctcaatgcgtgacacttgagagccctgaattcggcctcctcggcgcactggttagcctcttgtcttctcaatggactgggagtggagctgcactttcattgcacaggtcgcggcacattttatgtttcagactggcgttgtgtttgatcagcgtgttttaattgtgtagtgccagtcttatcagcacatttcgtgttccccgcatgttgtgggaatcgacagcagaatgtacagttcattgagttggtctccctgaaacacctcagccaggtgaactcgcagccactcatcgccaaagctgaacttcctgccttttttcgccacgaccgtttcctcacgatctgagtctgactcattctcgggatttgtcttctctatatcattaggtttaggaagaaagtccgaactgatagtccgcttcgccattgtccattgtttacaggagacaccgctatgtcaaatctttggaGAACCCCCAAGTCCCGCCTCTTTTCACACATTATCCTATAACCGTGGTCATCCCCCCCCCCcTTCCCGCTGTCAATCATCCCCccccccaccgctctcacacacaggccagccttcttcttcttctgttttcgtctcctttcttcttctggagttaatgtcggttagcaaaccagtcattcaggcattaccactaactatagtgggctgaagtgtagaacaagtttgtcagcaacaaaaatatttaataacaaaaaaataaaaaacctgctaatttactggtcgcgcatgcgcgagttgatgaaaaatttactcgcactgtgtctaattttagCCCTGCCCTCATGAGTTTGCAGGTATGGTGCCAGGTGGGTGTCGATGAAGACGGtaaaacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctccctctagtctccctctagtctccctctagtctccctctagtctccctccagtctccctctagtctccctctagtctccctctagtctccctccagtctcTACATTTCTGTCCCCTTCTGCAGATTCTGGTCACCAACCTCGATTTCCACGACGAGCAGAAGCGCCGCAACCTGAACAGCACGCTGCACGAGCTGCTGCGGATGAACATcGTGCCCATCATCAACACCAACGACGCCGTGGTGCCGCCCCCCgTTCCCAACAGCGACCTGCAGGGGGGGAATGTGGGTGACGGGCATGCTGCGTGAAAGaCGGATGCTTTTTCTTACATTTCCACCaTCACTGACTCTTAACTTCTCTGACACGTTGTTTTCGTGTTCCAGGCTGTTCAGCCTGTGGTGCtTTGATGTTTCTATTGTTCTCCTGCGTGCGTCCTCTCCTTTTGCAAAGAGGTGAACGCGTGCCGTTGCTtTGGCAACCGCATGGCACCGCGAAGCTTTTGTTGCAATGAAGCAGCAGAGAAGCGTTTCTCCTCCTCTTGAATGTGTGTTTGTGTTCCAGGTGATAAGCATCAAGGACAACGACAGCTTGGCTGCTCGGCTGGCCGTTGAGATGAAAGCAGACCTCCTCATCGCCCTGTCTGATGTCGAAGGTACAGTTTGAGTTTGAGTTTGAGtttagtttatttcgatcagcaaaatatacaacaatcagaattcaacaaaagaaaagaatggctgaccgaaagggtcgagtctgaagctacctagcttataagagccctaacctatgaattctcaaaaaaacgtatttcaaagaaccatatatatatatatatatatagaaacacacacatacacatatacataAAACAAAACAAACAAACCAGAATTTCTagaacttgtctccatcacccgttacttcttctgcttcatcgatgctgttacttctatacttctccagtcatgtctttacattttttcttgaatGACAGACGTCTGACTTTACATGTGTGCATCAACGTTGGCTTTCTTTACGTATTTCATCTTTTCAAAGGCCTGCAGAATGTTTTTTATCATGTCAAGATGTATCAAGAATACTCGTCATAGGTTACCACAAACCCACGTAGTTTATGTTGTCGAACAATTAACTGCGTGGGAATTATATAATCTACAAATTCCTGTTTTTTTATTGAGGTTTTAGGAAGCTGTGTTCTGTTGTTCTTTTCCTGaCCTAGAGACCTGACGGCAGGATGCCTCTACATCAGTCCCACCTTtAGTGCAATGATAAAACAGGTGTACTTCAGTAAATCAGAAATGTAAATCCTCATTAGTCAAGCAGcTTATTATTCCAGCAATAATCTGCTGTCCCTGCATCGTCTTTAGGATTGAACATCACATCAGTCACCTGTCCGTATGAACTCGTTGTCGGTGGCCTGTCAATGTGACTGCGTTGGGCTGCGTGTCGGATTACACATGCAATGCTCTTCTCCAGGCTTATACGACCGGCCCCCGGGGACAGACGATGCCAAACTCATCGATATATTCTATCCCGGAGACCAGCAGTCGATCACCTACGGCACCAaGTCCAGAGTCGGCATCGGCGGCATGGAAGCCAAGGTCGGCGCGGCGGTGGACGCGTTCTCTCGAAGTGTCAACGGCGCCGATGGAAACACGGCGGCGTTGACACTCCGTCCCGTTGTCCTCTGCTTCAGGTGAAAGCGGCGCTCTGGGCTCTCCAGGGCGGGACGTCGGTCGTCATCGCCAACGGCACACACCCGAAGGTCACCGGCCACGTCATCACGGACATCGTGGAGGGGAAGAAAGTCGGCACCTTCTTCTCTGAAGTGAAACCTGCAGGTATTTGGTTAAACCaCGTGCAAAGAGGATTTGATTCACTCTGTTTCGATGTTTGACGTCTGCACCGTGAACCCCACCAGGTCCGACCGTGGAGCAGCAGGCGGAGATGGCTCGCCATGCAGGCCGGGCTCTGGCCTCCCTGGACCCCGAACAGGTGAGACTCGCTCACTATGGTCGGCTCTTTAAATGCGAGAACGGCATATATTCATCACTGATATATAAAGATTGAATCCCACGAGAGAGCATCCCCCGCTGAGCACACACAGAAGAAACTCCCAGGAAGTGAATCCTTCATCACCTGATGCAGGTgtagcctgtggctcaatttcaatatctgtttaccaaagtctctgatgtcgtctccaggttcggctgtggagctcaattagtgtggaaaaaacacaaaatcaaatagttgagttttacgggtttttactgaacataaaaatatatcaagtacatgtatttataatgaaacagaacgttgtcttaatggacggtcctcgtgttcatccgactcgtgggcagctcttcatcttcatgtgatacacatttatatcagctcaaaaaacctgacctgtacaaaaggtcacataaaacagttaactcaaaacacaaacaaatgttaacagcagaaaccaaaagcgctgacacagtcagggaaatacaaaggaaaagaaaaaacatgtaacataacaaaatggggtctaacattgactcaacatatgctcagcacattgcacagtccacaacacaacattcacttcaagaaaaggaggaacactcgcgctgcactcagcgctgtctgcaccatccaaacaggaagtgacctccatgacccggatatttatgaggactctggtcctggattggccaatgaaaagatgttcctccctgagccaatcagtgggCGACACACACGgGCTCACCACACCCATCCCGCCGTCACGCTGCTGGTCGCTGTCGTCCCTCTCGAGGACGGTGATATGTTCTTCTCATCGGGGGGGGGGGGgCGCTGTGCTTGTTCTTCCAGAGAGGGGAGATCATCTGCTCGCTTGCTGACCTGCTGACGGAGAAGAAAGATGAGATCCTCAGTGCCAACAAGAGAGACATGGAGTTAGCAaccacaTCAGGTACAGAGGAGACCCGCGGACCCCTGGAGAAGCATGTGAAGGAGGGTCACGTCATCTGGGTCAGCGTGCTGTGTGTCTGAGCTCAGCCGTGGATCGGCCATGAGCGGGTTAGAGTTAGGAGTTTAGAAGTTAGCTTGCAGAGCAGGAGTCAGGATGACATCAGCAGCGTTCTCCTCTCGTTGCTGACGGCACATCGATGTTCCATCCGAGGATCTCCAGAGCGTTGCGTTGTGTTTTCTTCCCGTTCGCAGGTCGTCTCTCTCAGCCTCTGATCGACCGTCTGAGTCTCTCGTCTGCGAAGCTGAACGGCCTCGCCATCGGCCTCCGTCAGCTCGCCGTGTCGTCCAGGCATAGCGTGGGTCGGGTTGTGAGGAGGACCAGGGTGGCCAACAACCTGGAGCTGGAGCAGATCACCGTCCCCATCGGGGTCCTGCTGGTCATCTTTGAGTCGCGTCCCGATTGCCTCCCGCAGGGCGGTAAAGCCGGCGTCCGGCTGTCGACGCGAGGCCTTCGCTCAGCGGGGGCTGGGGGACTCACCCGGGTCACTGAAGGTCACGTTGACGTGCTGGATGTTGCGTTTCAGGTGTCGGCTCTGGCTATTGCCAGTGGAAATGCTCTGCTGCTGAAGGGGGGTAAAGAAGCGTCCAACACCAATAGAATCCTACATCAACTCACACAGGAAGCGCTCTCCAGCCACGGAGTGGCGGACGCCGTTCAGCTGGTAACACTGAAGCCGTGGCGTCAGTGAAACGCACGCGGACAATACCACCTCTAAGATATTCCGTGATATAAAACAATGTACTCGTGCAGGTGAGCACCCGGGAGGAAGTGGAGGATCTGTGCCGACTGGACAAGCTGATCGACCTGATCATCCCGAGGGGCTCGTCCCAGCTGGTCCGGGACATCCAGAGGGCGGCGAAGGGCATTCCCGTCCTGGGCCACAGCGAGGGCGTCTGCCACGTCTACCTGGACAACGAAGCCAGCATCGACAAAGCCATCGACATCGGTGTGTGGGCGAGCGTTCACGATCCTGCACTCATTCCCTCCAGTGTCAGCGCCATGCTTGCCCGGCTGGCCTCGTGTTCTCGCTCGCCATCCAGACTCCGTCAGTCCAGCGTCTGTCCGGTGTCCATCAGAGCGTACGCTCCGGCTAAATTCCCACGTCcTCATGGCAAGTCCCTCGCCCACCGCAGTGAGCTGAAGCAGGCCAAaCGCATCGTGGTGAAGCTGGGCAGCGCCGTGGTGACGCGGGACGAGTGCGGCCTGGCaCTGGGGCGGCTGGCCTCCATCGTAGAGCAGGTcACGCCGTTCATGTCGCCCAGGCtgaaatactccgtgttaaacttcaatagcatatcgcagggctctcaagttttgaagacagattggctgataagtggctcctcacagcagaactcaggttgtgggaatcgacagcagaatgtacagttcattgagttggtctccctgaaacacctcagccagcaaaccagtcattcaggcattaccactaactatatctccctccagtctcTACATTTCTGTCCCCTTCTGCAGATTCTGGTCACCAACCTCGATTTCCACGACGAGCAGAAGCGCCGCAACCTGAACAGCACGCTGCACGAGCTGCTGCGGATGAACATcGTGCCCATCATCAACACCAACGACGCCGTGGTGCCGCCCCCCgTTCCCAACAGCGACCTGCAGGGGGGGAATGTGATAAGCATCAAGGACAACGACAGCTTGGCTGCTCGGCTGGCCGTTGAGATGAAAGCAGACCTCCTCATCGCCCTGTCTGATGTCGAAGGCTTATACGACCGGCCCCCGGGGACAGACGATGCCAAACTCATCGATATATTCTATCCCGGAGACCAGCAGTCGATCACCTACGGCACCAaGTCCAGAGTCGGCATCGGCGGCATGGAAGCCAAGGTGAAAGCGGCGCTCTGGGCTCTCCAGGGCGGGACGTCGGTCGTCATCGCCAACGGCACACACCCGAAGGTCACCGGCCACGTCATCACGGACATCGTGGAGGGGAAGAAAGTCGGCACCTTCTTCTCTGAAGTGAAACCTGCAGGTCCGACCGTGGAGCAGCAGGCGGAGATGGCTCGCCATGCAGGCCGGGCTCTGGCCTCCCTGGACCCCGAACAGAGAGGGGAGATCATCTGCTCGCTTGCTGACCTGCTGACGGAGAAGAAAGATGAGATCCTCAGTGCCAACAAGAGAGACATGGAGTTAGCAaccacaTCAGATCAGCAGCGTTCTCCTCTCGTTGCTGACGGCACATCGATGTTCCATCCGAGGATCTCCAGAGCGTTGCGTTGTGTTTTCTTCCCGTTCGCAGGTCGTCTCTCTCAGCCTCTGATCGACCGTCTGAGTCTCTCGTCTGCGAAGCTGAACGGCCTCGCCATCGGCCTCCGTCAGCTCGCCGTGTCGTCCAGGCATAGCGTGGGTCGGGTTGTGAGGAGGACCAGGGTGGCCAACAACCTGGAGCTGGAGCAGATCACCGTCCCCATCGGGGTCCTGCTGGTCATCTTTGAGTCGCGTCCCGATTGCCTCCCGCAGGGCGGTAAAGCCGGCGTCCGGCTGTCGACGCGAGGCCTTCGCTCAGCGGGGGCTGGGGGACTCACCCGGGTCACTGAAGGTCACGTTGACGTGCTGGATGTTGCGTTTCAGGTGTCGGCTCTGGCTATTGCCAGTGGAAATGCTCTGCTGCTGAAGGGGGGTAAAGAAGCGTCCAACACCAATAGAATCCTACATCAACTCACACAGGAAGCGCTCTCCAGCCACGGAGTGGCGGACGCCGTTCAGCTGGTGAGCACCCGGGAGGAAGTGGAGGATCTGTGCCGACTGGACAAGCTGATCGACCTGATCATCCCGAGGGGCTCGTCCCAGCTGGTCCGGGACATCCAGAGGGCGGCGAAGGGCATTCCCGTCCTGGGCCACAGCGAGGGCGTCTGCCACGTCTACCTGGACAACGAAGCCAGCATCGACAAAGCCATCGACATCGGTGTGTGGGCGAGCGTTCACGATCCTGCACTCATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00696	AA_kinase	Amino acid kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001048	Domain	Aspartate/glutamate/uridylate kinase	Interproscan
IPR001057	Family	Glutamate/acetylglutamate kinase	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR019797	Conserved_site	Glutamate 5-kinase, conserved site	Interproscan
IPR036393	Homologous_superfamily	Acetylglutamate kinase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11063	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004349	Molecular Function	glutamate 5-kinase activity	Interproscan
GO:0004350	Molecular Function	glutamate-5-semialdehyde dehydrogenase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006561	Biological Process	proline biosynthetic process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-