Gene detail

Detailed information of HS06401 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS06401	INTERLEUKIN-1 FAMILY MEMBER	chr7	17079659	17082570	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS06401

ATGGAATCTGAGACGAGGTGcAAGGTGAGCGGCGCGTGGAGCCCCACTATGCCCGAGGGCTTGGCCTTCGAGGTGTCCCATCACCCACTGACCATGAAGCAGGTGGTCAACCTCATCGTGACCATGGAGAGGTTCAAGGGCCACGAGGCCCCTGTGAGCACCGAGTTCAGAGACGAGGACCTGCTCAACATGATGCTGGACAGCTTCATGGAAGGTAACGCAGACGCTTTATTCACCGGATTCACCAACGgCCAAAAAAATCCAGAAAAGAAAAAAAATcagacaactttgtgttttccatgaaaactcacttttatttatcaaataaattgcaatatatatatatatataaaatatagtcagaaatactgccaTATAAGTCCTCTACCAACAGTGGGGGAGGCGCTTATTGATATGATCTtattaataataatgcattcaatgtatatagcgctttttaaagtatactcaaagacactttacatcacataattaaaacaccctagaagctatacgataaaaagaactacaattacaataaaaacaatggataacataagataagaCAAAATAATCTTGTATTAGTCCCCCAGTGTGTAACTTGCAGGATTACAGCAGAAATAAAAtaAAAAAAGTTTTtAAAAACAGTCGGAAAAATACAATAGCATTATTAAATATACAAACGGAATAAAAGTATATACAAGGTAACAATTACGTTTATTTTCAGAAACAATAATAAgaattgaaatgcagaaatcttagaattcaaatggagaaaactttgaattaaaatggagaaaactttgGagagacatgttagaattgaaataaagaaatgttagaattaaaatggagaaaACTGAAGATGACAGGAGCTCAGATCTCCGTCAACACTCACTCGAGCAGCAAGAGAGGGAATCtgtggctgtttgttgttgttgttgttgATATTAATTTCCCGCTGTTTTCTTCTCCTCAGAGGAGATAGTGTGTGAGCTCGGCTCGGCTCCACAACCTCAGATCAGCTGGACGGGCGAGGAGCTGTGCAGCATGACCGACGGCGAGAAGCGGAGCGTCGTGCGCGTCGGGGACAGCGTGGCGCTGCACGCCGTGATGCTGCAGGGCGGCACCCACCTCAGGAAAGGTGATGACGTCACGTGACTATTGGGTCTCGACAGGAAGTGAACGGCGGATATTTTTAGGATCATTTAATGTAAActCTGAGTCACACAATTAACTCGTAACGTAGCCGTCGTATAAAGGTAGCGAGCTATTCATGATGATATTAATAATAAAAATAAGAACAAaTTTATATAgtgactttaggtctagcaggtccgtctctcaatcaaaggaccggcggttgcccttgagcaagacacttgaccctgaatggcaccgcgtaacttgtacaaagcagtatgtaaatTACATTTGTTATTATTATTTTTTAGGTTTAGACaAAGCAATAGAAGTTAGAACAATAGAAAGCTAGACAGCCAAAAGAAGTAACATTTAACAACCGTGATAAAAGAACAATAGATGAAACAATGAAACCAACACAAGAGCACACAGGAGAcTGTTTTCCTTTTTAATCGTATTGTAATGTAAGTATAAAGTAGCAGCTCCGCTGGTGTAACTAATGATAGGAATAAATGCACAtaaagcagcggttattaaactgtggggccctctagtggagcgtcaaggcattacatgcagatcttttttatttcaagaccgttgagaatttcacatattccaaagcacacggacataaaactaagtcattaataaataaagagcaacatgcctactctttagtgtaaatgatcacgtgacggcattaacaggttacgctgcgcatgcgcgacggccgagataattggcgatttgccacttactccgtgagatcggctttcctgttgttgcacttcaaaacaagagctcaatattgagctttaagtgagaccagtgataaagggattgaaaacttgaaaatctggtttaattgaaagtgaatgcaaagtaattctattatttgaaaaagcaacagatggaggagtcacaaaaagttgttatttcaataaaaattcagcgtgtgaccattttgttacaattttgttggggcgtgaacatctttcttGAGAACCACTGACTCAAAGTATCACCAGGTGGTCGATAGCCTGTCTGATTTCAATCTAAATGACCTGCGTCCTTCCGTCTCTCAGTGATCCTCAACATGTCGACGTACCTGCACCCGGCGCCCGGCGCCGAGGGCCGGACGGTGGCTCTGGCCATCAAGGACACaAACCTCTACCTGTCTTGCTGCAAGGATGGAGACACGCCGACTCTGCACCTGGAGGTAAGAGTCACGAATCAGGACCAGATTTTGTggccctggatatctatcgtttcctttgtttccattgttaccgatagttcagtgatttttttctctgtagttttgctgcattcagtctatgagaacaCACgagacaggatttcagggtcatgatgatgtgttatgctcattttgactctatcactgagataaagatgaactatcagtgttataataatatatagtaatgcaaagaatagagagatgtggagagttatttcttgtatGCTTGACCTTTAACCTTTCTTTCTTTTTTACCCCCTACCCTCAGGCCGTGGAGGACAAAAGCACGTTGAGCGGATGGGGCACGAGCATCGGCCTGGACAGCAACATGTTGCGGTTCCTCTTCTACAGACAGGACACCGGCGTGAACATCAGCACCCTGATGTCCGTGGCCTACCAGAACTGGTACGTCAGCACGCAGCCGGGCAACAACAAGCCGCTGACCATGTGCCTGCAGTCCACCAGCCACGCACAAATATTCAACATCCGAGAGGAGGTCGAATATATGGAATCTGAGACGAGGTGcAAGGTGAGCGGCGCGTGGAGCCCCACTATGCCCGAGGGCTTGGCCTTCGAGGTGTCCCATCACCCACTGACCATGAAGCAGGTGGTCAACCTCATCGTGACCATGGAGAGGTTCAAGGGCCACGAGGCCCCTGTGAGCACCGAGTTCAGAGACGAGGACCTGCTCAACATGATGCTGGACAGCTTCATGGAAGAGGAGATAGTGTGTGAGCTCGGCTCGGCTCCACAACCTCAGATCAGCTGGACGGGCGAGGAGCTGTGCAGCATGACCGACGGCGAGAAGCGGAGCGTCGTGCGCGTCGGGGACAGCGTGGCGCTGCACGCCGTGATGCTGCAGGGCGGCACCCACCTCAGGAAAGTGATCCTCAACATGTCGACGTACCTGCACCCGGCGCCCGGCGCCGAGGGCCGGACGGTGGCTCTGGCCATCAAGGACACaAACCTCTACCTGTCTTGCTGCAAGGATGGAGACACGCCGACTCTGCACCTGGAGGCCGTGGAGGACAAAAGCACGTTGAGCGGATGGGGCACGAGCATCGGCCTGGACAGCAACATGTTGCGGTTCCTCTTCTACAGACAGGACACCGGCGTGAACATCAGCACCCTGATGTCCGTGGCCTACCAGAACTGGTACGTCAGCACGCAGCCGGGCAACAACAAGCCGCTGACCATGTGCCTGCAGTCCACCAGCCACGCACAAATATTCAACATCCGAGAGGAGGTCGAATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00340	IL1	Interleukin-1 / 18	Domain	Interproscan
PF02394	IL1_propep	Interleukin-1 propeptide	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000975	Family	Interleukin-1 family	Interproscan
IPR003502	Domain	Interleukin-1 propeptide	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10078	INTERLEUKIN-1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005125	Molecular Function	cytokine activity	Interproscan
GO:0005149	Molecular Function	interleukin-1 receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0010628	Biological Process	positive regulation of gene expression	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0042119	Biological Process	neutrophil activation	Interproscan
GO:0048246	Biological Process	macrophage chemotaxis	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan
GO:1901222	Biological Process	regulation of non-canonical NF-kappaB signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-