Gene detail

Detailed information of HS05890 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS05890	UBIQUITIN-LIKE PROTEIN 4A	chr7	4953421	4957898	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS05890

ATGATCCTCACCGTGAAGCCGCTTCAAGGGAAAGAATGCAGCGTGCAGGTAAGTTAGGCAGcGCCGAGCTAACTGCTAGCTTCCGACCGCTAGCTTGAATCGCAAGTAACGTGAGTCGATGGCCTCGGCTCACGCTGCCTCGGGCGAAGCACAATGAGGACACTTCGCTTTCAACGTTAGGCTGTCaGACTCCTTTCAGAGTCACGATAGTTTTAATGTATCTCCTGTACATATTGTCCGGCTGTGACTCGGTGTAACTCTAGATGGCCTGTTGGCCACATTATTGAGAGACGCAGTGACGTTCACTGTCACGGACTTTCTCTGGTTGGTTGTCTCCTCGCTTCTCGTTTACACACACGGTAGTTacAGGAAAGCTCTGTACATCCTCACGTGGTGCTTTCTTGTaGGCAGGTCGGAAATGGAAGTCACGTGGTAAATACTGTAATAGGCACTaGCGTAaAGTTAACTTAAcagggttcgtacggtcatggaaaacctggaaaagtcatggatttttttttaatggtcatttccaggcctggaaaagtcatggaaaaaaaacttgaatcataaaagttttggaaaagtcatggaaatgttggtatattcgaatgttcatttacgctgagtttgaaataattaatatAAGCGGATGGATTTGCACATAAAGAATACACATTTATATAAGTGTATAAAGGAATAAACATGAATAGaaatgtttattattttaatcaaactattgtctcatttgtttcatttaaggtaaactgtatgctttggaattctcatttttttaatacaaaattctctaaattgttcatgtttataccgagatttcactttggtcttggaaatttgatttaaagtcatggaaatccattgttcaaaatgtaagaaccCTGACTTAAATGGTCTTCTCATGCGTCTGTGATGTAATGTTCTCAGAAGCAGGGCGGGGCCTTGGGTCCTAACCCCAATGTGTTCCCCTCAAGTTTAGATTTGATGACGTCTGAATGAGGCACTAAATTTGGAAACACCAAAATGCACTTTATCTGCAGAGGCTATATGTGACATGGGGACTACTGTGATCAGGATGTTACTGTGAGACTCTGAGGTATTTTGAGTAGAACAATGGAAATACCGCGTAATGTTACTGTAAAGCATTTGCTGATGTGTGTATCAAATGGGGAAGTATTTATCATACTGGTCTAACACTAAATGTTATCAGCTGTtTCTTTTAAACTTAATCAGTGATCAAGACTGATTTTTCTTTATCTGAAAGTTTAAAAATACCTGGCCTTTTATTGTTTGTGTCTGCAGCGCTAAAAGGAGAAATACCACTATTATAGATAACTTACTGTTTGTTTTCTCTGGAACACATGTGCTAAAGTGGTCATTTATCAAGGTaATGTGCATTTAGTACTTGTGAAGGAAGGTGTATTCCCCATTAATTGTTGCGTGTATATAAAGTTGGTGACATTTGAGTACTCTTCAGCCCAGGAGAGTGGAGAATAACAGGAGGAGAGGGGAGAATGCGTGCCAAATGTATCTTAGTGCCACTACATAATCGTGTTGTTGTTGTTCCAGGTGACTGAAGATGAAAAGGTCTCCAAAGTGAAGGACCTTGTGTCcGAACGTCTCAACATACCAGCAAACCAGCAGCGGTTGCTCTATAAAGGGAAAGCGCTTGCAGGTAGATTAATAAATCGTTAATAATCTTAATGCGGCGTTGTAATCGCTTGATtCACCAATCTCTTtTATACATAAAGTTAAACCAATCTGAATGACTGCATACCATCTTGTTTTCTTCAGATGAACACAGACTATGTGATTATTCCATCGGGCCAGAGGCGAAAtTGAATCTGGTCGTCCGTCCAGTGGGGGAGAGAACTGGAGCGTCAGGGCtGGCTTCcagctgcagcagcagcagcagcagcagcagcTCACAGGGAAGAGTGTGGCAGACTGTGTCCACTATCCTTGCGAGACACTTTAGTCCAGCAGATGCGGCAAAAGTGCACGAACAGCTTATTAAGGTATTTCATAATTGTACTACAATGCATCGTAGTctcagtaattgtagaaggtcgtcttttaaccacaaggctggcggtttgatccccggctCTTATGATATgatatgatataaatacctttatttgtgccacagtggtgaaatttcaaaaatcacagcagcggtgcacatcagagcatcaataaaaataattagaaaacacaaaactaaatactaaaaactaaatTATTGTCCCTTGTCAAAGTGTTCTCGAAGAAGCCACCTCCCTGGGTGCTTGACAATAGCCCGTTGCTCCCTAAATATATAGaATCGGTGATATGCAGAAATTATCATATCATCGATTAccgtattttccgcactaaaaggcgcacttaaaagcctttaattttctcaaaaaacaacagttcgccttataatccggagcgccttgtatatggattaattctgtttgtgcttactgacctcgaagcgattttgtgtggttcacggcgcgctgtcaacatgttttagtacgacttcggtaaactccaaagccgcaccgcttgcagcatcacggctaccgcagttaggagcgtcgcggagtaAtactgcaaaaaccagatcactgaaaagaagatccggtcagagcacgtcaccaacatggacacggttcccctcacctctgatacccccgtgaaccgcaccgtggaggaaacagggaccagaacgatgtcaCCCTTCACTGTCTCGCTTGCGGTTGTGAGtGTGTTGTATTTTATGTGTtataactagggctgtcaatcgatttaaaaaaattaactaattaatcgcacattttgaaattgcgattaattaatcgcgattaaaagttaaaagttcattatttttaaagacaaaacttcacacagagctgtgttttcaaagaggctcctacatatacagtgccagcgaggtatttaatatcgttgatgataaattgtttcttcagtgaaacatcagattagtaaaaaaaaaaaagtatattgagaccccattggtcctgtcatctttaacattgaacacagcagaaccagtggccttggtaactgactgacattcacatatgtcacgttaaccctctggaggctgggggcattttatacattttacaaaataaattaaattcaccgtttaaagtcttttgcatgtgacacacccccacgtgttatacatcaaacattccagaacaatctcagctctgaaatgagcctcattgtcctcgcgccgtgtcctctggttctctgactgacaggctgctaaatgagcctaacctgtgaggtgggaggtcctttgtgatttactgagtgttcattggttgtttttcccccaaaatgttgacagacaaacggattgaccaatcacggtgaaggtttcgtgtgtggcgttctttccgcgccgcgtcacccgacacgtcgccccttcgttcctctgtgtctcagagggggagacgggaggaaggaggagcaggaggaaacccgactgattcatccacgagttaaactgatttctgctccttattttcgcggagaaatgattgttttaaaaacggaaacagtgtcaaaccgcactgccgcggtttaaaaaaaaaaaattgcgttaaaatattttagtgcgttaacgcggccaaattaatcgcatagattaacgcgttaacgctgacagccctagttataACTTaacaatgttgagagttattgtgaacacgtttcataaaatttgactggctgacttttgtttcgcttaatgcgccttatagtccggtgcgctatatacatgaaaaaagatggaaaatagaccattcattgacagtgcgccttataatccagtgcgccctatagtgcggaaaatacggtaCTCaTCTATCTCAGTAATATAGTTCTAACACTTcAACGTAAAAGGCACTGCAAGGTCTCAATTATAAGCACAAATATGTATAGTtTTCATTTTTACATGTATATAATAAAAAAAAGCCTAATTACATTCCCTGTAATTGCATAAATACCTCATAAATAAAAGTCATTATATGGATATACTAAAACTTTAAAAGTTATCAACTAGATATTTTGAAGTTAAGTTGTTTCATAGCAGCTCTCTGGAGATaGACTTGGAAATCTTGGACCTACCAAATTATTTAGAGCCTGCTGTTAGTGCAGCATTAGGTTGGTTTGGCTTCAGGTCTGCTTTATTGCAAACTAAgCAATACTTCCCATCTCATGCTTTATTCGAAATGGAACAATATTGCCCTACACACTGGTTTAAAGAGATTCTTTAATATTTTAAACCTGCGCTGTCTCAATATGAtTTTTCTTTTTTCTTCAAGGACTATGAACGGTCACTTCGACAACTTAGTCTAGACGACGTCGAGCGTTTGGCGGGAAGACTGCTTCACCCCGACGGCGAAGACATGGACACCTCGTACATGGACATGATCCTCACCGTGAAGCCGCTTCAAGGGAAAGAATGCAGCGTGCAGGTGACTGAAGATGAAAAGGTCTCCAAAGTGAAGGACCTTGTGTCcGAACGTCTCAACATACCAGCAAACCAGCAGCGGTTGCTCTATAAAGGGAAAGCGCTTGCAGATGAACACAGACTATGTGATTATTCCATCGGGCCAGAGGCGAAAtTGAATCTGGTCGTCCGTCCAGTGGGGGAGAGAACTGGAGCGTCAGGGCtGGCTTCcagctgcagcagcagcagcagcagcagcagcTCACAGGGAAGAGTGTGGCAGACTGTGTCCACTATCCTTGCGAGACACTTTAGTCCAGCAGATGCGGCAAAAGTGCACGAACAGCTTATTAAGGACTATGAACGGTCACTTCGACAACTTAGTCTAGACGACGTCGAGCGTTTGGCGGGAAGACTGCTTCACCCCGACGGCGAAGACATGGACACCTCGTACATGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF17840	Tugs	Tethering Ubl4a to BAGS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR019954	Conserved_site	Ubiquitin conserved site	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041421	Domain	Ubl4, C-terminal TUGS domain	Interproscan
IPR044724	Domain	UBL4A-like, ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46555	UBIQUITIN-LIKE PROTEIN 4A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006620	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0071816	Biological Process	tail-anchored membrane protein insertion into ER membrane	Interproscan
GO:0071818	Cellular Component	BAT3 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-