Gene detail

Detailed information of HS05630 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS05630	ZINC FINGER PROTEIN	chr6	27409328	27418565	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS05630

atggcgactcctccggcgcccgagtttcactccatggaagattttccactcgagcagtctcgggacgatactctacgctcagcctttggccaagtgatacgaattgatggtcagttggtgcaccctgacgcagcgcagacatatccgcacttcacattgatcagggacagactgtacagagtgagccgtgacactcacacagggcaggaaagcacccagttgctggtgccgaagagccgccgggaaatggttttccaggcggctcactataacccgatggctgggcacatgggatatgataaaactctggaccggataatgacccgattttattggccgggcatccgggcggatgtgcgccgttggtgtgcgtcctgcccggagtgtcaattggtaaaccctccggccattccgagggcacctttgcgccctctgccattgatggaggttccatttgagcgcatcgcaatggacctcatcgggccatttcaccggagtgcacgcggatatcgatttgtgttagtcttcgtggattacgcaacacgatacccggaagcggtgcccttgcgcaacatttctgcaaagagtgtcgcgcaggtgctgtttcaggtcatctcccgagtcggaatcccgaaagagattctgacggaccagggcacccagttcatgtcaagaacactgagagaactttatgggttactgggtatcagtggcggttcgtccatagggggcgctagggcgccgcccctcttaaaatttggagatgaaagaagaagaagaaaaaaaaaatcatttaaatagtaaatataccgtgttgacgcgctaaatgtgtgtgggagaccgtaagcccctgtcaacaaccacttaagttaatgtgaaaaaatataatatatcgccattatcacggagagaagcccctcccctttttcggggcgctggtctaacgtgtgtgtacggcatcgatacaacatttcagtcgttttggcaaagaccggcttcacattggcggatgaaactgaatcttggggcacaaatgtgcgcacgcgattggattattcggcagatcagagaaccgtatgttccctcagcccatagagcagtgttgccaggtccgcggttttcctgcggaatcgggccacttttgaagtgttgcgggttgaatttttgtccttggttgggtagacctattttgcatgcaaattacatgaatatctttaaataaaaatccatattttaaatgaaataatttattcatacccaaatcctaccaaactgactccagatcagcacgtacacattttatttatgataatatactgtatctaattacacaaggccattttaggacatagggaaataactgtttaggaaaactgcttttaatgctggcaaactaaacatatgttgttactttgtagatattacaatatatttggcaatgatagcaatgctgttggactttaaaagcagtgtatatggtttggcacgggcatattttgagttctgatattgggctggttttgggctggttttgattggccattgggctggttttgtcacacagacctggcaaccctgctcacaatggttttatattgctgagggtgagttgagtgaaaaacgatgttgcactattttggctatattcttttataaaattaaccgtttatgttacatacagtaatggtcgcaaacgatcacggcgtccagctggcgtgtcatttagaccgtcaacatatacgtttggtggcggtctcattgagccactttggcacccgttgtttagctacatccggtcgcccgacgtatattttccttgtgtaaattgtgttttgcgtgtctaggaagtgatgcagaccccgggaaaaagggtaaacaggggcggggggcccgttttcccgaatggagtgaccgccctgcgccctcccccgggaaaggtgtcggaggagggaggagggtccagggtggaggaggtaaagcaagctctctgtgggaaccactccttcacacaccaaacctcctggcctcattactcgggcggaccatgcccgacaatggctcgccgttgggtccaagcaagtaggaggtttggctttaaaagcctttaagcttcaagggagggcataggccggggaaaagggatggcccccgtggccgacttcctctcccgcgctcataggggacccgcctgctaaaggctcaccggatgcccgaatcccggtggcgggttttgtttcagtatctggcccgctttggggcttacttcctctgtctcattttgcacttttcctctcttttcttcttcttttctttcacgtttgtcttagttcggtcggacactggaccttagctacttcttacgattcttctacagtggcatttgtagactttgtcgtgagtatgggtgagccgcagcataactatgactgggaccgctctcaccgcgtgctcagctgatcgctgtgcaggccgaagcttctgcctggagaaagacctgtgatcccgctggagctacggagaagggctcgcggtttgcagatcgggcgtcaagcgggcggctacaacgaggagatacaaatcctcggtaccgttgatcataacggggcacgtgagggctttggtgaataagacggatgagctcggcgctggtaatgtctgagaggatcttccgtggggcagtctcttttgcttcactgagacgtggctgcacgcgggctatccggaccacagcgcgtccatgcccggctccaggactgttcgggctgacagagacgctacacagagcggtaagatgagggggcggatcgctgtttatgtgaatgaacggtggtgccatccggaccatgtgtgcgtgaaggagcgcttctgtagcccgaacattgaactgttggccgtggggatgcgcccgtactatttgccgagagagttcacgtccgccattgtggttgtcggtacgtgccgccatcagctgacgctgaggaagctgtggacaccatccactccactgtgtctgctctgctgaatcatcagcctggagcattcatggctatcactggtgactttaaccacaccacattggataaagctctgccaaccttccatcaatacatagactgcccaacaaggaacaataaaactctggacttgctgtatgctaatactaaggacgcatacagcgccactgcccttcccctcggcaggtctgatcatgacctggtccgctgacacccaggtatgttcctctggtgaagaggctgcgtgaccaccaggactgtgaggaggtggtctctggaggctaaagacgctctacaggactgcttgagtcaacggactgggatgtgttgtggaccgcacggagacatcaaagtatgaccgatgcatcacggaataacaagttctgtgaacacaccacctcccatcacggattcgctgcttccccaacaacagctgatcaccagggacctgaaggcgctctaacatgagaaagctgcttcaggtctggagacaggatgagctgagaaagcccagcgcaacctgagtaagctcaggaggcaaggactcctcaggagaagctggaggccaaactccagctaacaacacaagggaggttggtctggcatgaagcaataactgcttcaaggtggatggagacgccaggggttcctggagagggccaagatgaactgtttttcaataggttcagttcaagccctccttcctccacatacacctcccaaacacctctcctctgtccccctgctgagctgcacatccacgagccctcaataaaatggcctccccctccatcttcttgacgactgaccaggtgagaagacagctgagaaactacaccagcgcagactgaaggtcctatgatcaccccagggtcctaaaacctgcgccacccagcttctgtgtcctgcacgcctcttcaacctcagcctgaggctggggatcccatgtgtggaagctcgtcctgtcccttcccaaaagtcagcaccatcgctcagactaccgaccggtcgcccactcccatgtgatgaaggtctggaaggctggtttggcccacctccgccgaggtgaaacatgttggaccctctcaatttctaccactcattgggagtgatgctatcatcacgtgcgcaacgccaaactggatgaaccgtgtctctgtgaagtactttcgactttccagtgcttaacaccacagccactgtgctgaggaaaactgagtggcctgtgcgactcacaatcctggatcatatactatggcagaccagtttgtcagagggcgtctgtctggacggtggtctgagttgagccccaggaactgttctgtctccttcctcttaccctgacacagtgacgtccagacaacacggagtcgccattgagaagtactctgtgattctgcagtggtcggtgattagggatggacgggaggagagtacagggcgtgtgatgactttgtaagtgggcgatgaaaccacctgcggctgacggccaatacagagagaggtgtggttacggcaagctcctacactctgagttcctggaggtttggcttgaggaatatggggcgcatgcagccgctgaagctggatacaaatcaactctcaaacaggaggtgtgtttataaagcttatccgtagaaatcaagaagagctggagtcatttcctgatggtcatatgcctgcactttgcaaactttcggttcagaaatacattgccggttaaacacttaagataatgttcttcatagtccaatgacatctaaagtgtgagactcgtgaatgacactggttcgactattggtcgccagacgtcctcaggatgctggaaaaaccccaaaaccccttggttctagcttaaggggtttgggggggggccccactgggagggcaacagtaactttttttggggagaaaaccccgcccctaaaaaaccctccaaaattctgctggggttggggttattcccactttttcatcaaaacttgagagccctgttactacatgtggctcgattaagtactcactcattgtttgttaaggctgcccatagcatttatctttttatttgcaggcctagaggcgaccttcaaacatttaaacagcactttgaacaagtaagatgtattataaagaatttaacataaagacaggatattggtgcaataatagaattagcaggcacaagtgctttggtaaatgagagtagagttattaaaaacattttaattctttaaggtaggcctgagtgcagggtacaacatgtgtacaacatgggtacaacgccacattaattcaaatttcctgatattatacccaccaacgtgtgtgggttgcgtgcgcggcaacattttggtcaccgttaccaaaattctcactccaaagtcctttgagaaaaagttggcgctctccagacgtgttgtaggagtggcttcagggaccctggcctctgacctacttcagaaatgcatacatttccatcgccaaacttctccgggttgtcacgcttctttttttgatgtaacgccacgttttaaagactaaagacggagacttgctggaaaaatgccatacctgttcgggagaggctagaaggagacgggaatacttgagcgaggacaaagtaggtgcttctgctgatgctcgttcaatatactactaacttcaatacaatagttgacaacacgcttgttgtcagtctgatattcatgttacacgccgctatctgacgcccaggtcgagtgagaccagtttactttcatacagtgtgtatgaaacatgcagcccgtggtttacacccagctcgcccaccgctgtgggaaactgtgatgactcatcaagttgtggtacaacactgtgctgtctcacatcttatgttttatattcaagacgacggatcagcatctatcatcgtgaatttctactctacctgtagcactcactggtccagattaaacatacctgttacctgttgtgttacgataaggacccacattgtcactactgccccacagtgagtgagtgtaccttagaaacatgacgtggagcggcttgctccagcctccatttaggatttagtctgcattaaggaaacgtttccatcttcatgatgaacatatcacttgttgatgtttatttaactctaaataggtcggaaatcacacaaaaaatctgaagttggaagacactatttcctctcggttcttaatgaggaaatcaaaaacaaaattattttaacgttttatgaaataatattatagttaaagttaaagtcaccttaaaagaaataatgttattcataattttccaatatttgatcattttttaaaaagctcattaaaactgtatataagaatgacactgcttttgtaatgatggcATGGGTCTGCCTGTGTGCATGGTACCTGTAGAGGGAAAACCTTTTTGTTTTATTTTCCTTTACGCATCGATGCCGTACCAGTATTTTTAGCAGTGGCCTGAAGAATGAGCTCGCGTTCAATTAGGATCGTGTGTTGTGCattattattattattattatatatatattattattTGTACGTGCCAGTGATTTTTGGAGGGGAGGAGACGCAAGtTTttttttttttggggacttcaaagtctttgggactttcgagatccagggattatattgtactttgagaggtctaattactatgttgtatgtgttcatttgggtctgtagtcagccgatgcgcattgaatttgatataaataataatatttggttttccgcaatttcgcgcaggttaagcagggacataacagccattagcagagctgccgattctcttagaatagcctattgtacctttccctttaggattaagttgtaagggagaatggtgacaCTTTGtttttattgattacctctgctatgcccatgattattttcagcatcatttaatgtgcagatattgagtgaatcaaagttaaagtcaccttaattttagaagaaaacgccttcgacatcatttgactcaatcaatattacacctccccccgctttaggattaatttgacctcattcaatgtttaatgtcgggtgttcttcggtagtcaacaaacaaaacataaagtgcctcacacttaaacttggaaacaaaattaattctaataattttctggaggttttaattgcttaaggcgtaaattgaaccccaaagggcaaatatgatagtaaatataaaggtaacaggagggtgaaatattgaatcggtcaacatgacccaaagcggggaggggtaaagatattgattcgggtcaaaatgacccgaaggcaacacaagggttaaAAGAAATAATAGTATTCATAATTTTTAAATATATATATATATTTTAACGTTCATATGAAAAAGATATATAATGTACAACGTCTTGTTCGAGAGCTCATGTTATCTCCATGGTCATTTTCCAAGATTATATTAAacttccaatagatttctgttgaagtggatccagtgttactcttcctgtcatttttgagtacattttagtgtgatagtgttattaaatgttcacactgtgatgaagagtgaggacttgatgcatacctagacagcatggctcaacgatcgtgatggccacaccacactgcaaaagggctgtgccagattgttcgttcaatttgtcatcgggttcttcctcttccatctcagtacactggcaacgttcgttcttgtcctgatgtttactaatgtcattgttattgttttgtatttgtattgtttgtacacaagagcaacaaatacccattgagtcagtaactcctgaacgcctccagtcatgaaagcatcagtcactggggcgaattgttcataatgtatctcctgcagatgtccagcagcaggtagggattggaagcagatgtcccctgaggaccaggacaaaggagaacacagagccctccacataaaggaggagccggagccctccacataaagagagccgagccctccttcctcctcaaaagacctgcgggatctcctggacctgcctagagggagctcattcagccagttgtgctggaggaggtcacatcgccaaattcccctcattctgctgttactttggagagtgaagatgacgaacgaacctcagacctcaaagcttcatcaaacctcggaggtaggaggagaagacagagaggcggagctctccagctagcagctcagctgcatcggagcacaaacagaaactgatggagagaggactgtagggatcagaccagacaggatcctaaccacatcgctgtcattcacatccaaatgctgttgatgaagaggcttgagactcttctgagactgaagctaaccagttctggtgagtggcaagaagctttgtcagatgatctggacctgaaagtgtagatgggacaatgtctggaaggagaccaggacagctgagtctgctgcagatgccttgaaatataaggaagccttgtagggtcatgtgggatgtaaacacagcgtcaatagatcaaatccaatgaattacaatcaaaagtgcgctcatgagaaaaagaaaccattcagttgtagacttagtgtggaaaagatttttacacgtcagggacatctgaagagccatgagagtccacaccaggagagaaaaaccattccagttgtgatgagtgtgggaaagagatttacagaacagggaagtctgaagagacacatgagagtccacaggagaaaccatcagttgtgcgacgagtgtgggaaaagatttacaggtcaggagatctgaagagccacatgagagtccacacaggagagaaaccattcagttgtgacgagtgtgggaaaagatttacacatcagggaggtctgaagagacacatgatagtccacacaggagagaaaccattcagttgtgacgagtgtgggaacagatttacaggtcagggagatctgaagagacacatgagggtacacacaggagagaaaccattcagttgtgacgagtgtggggaaagatttacacgtcagggacatctgaagagccacatgagagtccacacaggagagaaaccattcagttgtgatgagtgtgggaaaagatttacagaacagggaagtctgaagagacacatgagagtccacacaggagagaaaccaactgccaggacgagtgtggaaaagatttacaggtcagggagatctgaagagccacatgagagtccacagagagaaaccattcagttgtgaatggcgactcctccggcgcccgagtttcactccatggaagattttccactcgagcagtctcgggacgatactctacgctcagcctttggccaagtgatacgaattgatggtcagttggtgcaccctgacgcagcgcagacatatccgcacttcacattgatcagggacagactgtacagagtgagccgtgacactcacacagggcaggaaagcacccagttgctggtgccgaagagccgccgggaaatggttttccaggcggctcactataacccgatggctgggcacatgggatatgataaaactctggaccggataatgacccgattttattggccgggcatccgggcggatgtgcgccgttggtgtgcgtcctgcccggagtgtcaattggtaaaccctccggccattccgagggcacctttgcgccctctgccattgatggaggttccatttgagcgcatcgcaatggacctcatcgggccatttcaccggagtgcacgcggatatcgatttgtgttagtcttcgtggattacgcaacacgatacccggaagcggtgcccttgcgcaacatttctgcaaagagtgtcgcgcaggtgctgtttcaggtcatctcccgagtcggaatcccgaaagagattctgacggaccagggcacccagttcatgtcaagaacactgagagaactttatgggttactgggtatcagtggcggtctgatcatgacctggtccgctgacacccagagggagctcattcagccagttgtgctggaggaggtcacatcgccaaattcccctcattctgctgttactttggagagtgaagatgacgaacgaacctcagacctcaaagcttcatcaaacctcggaggagagaaaaaccattccagttgtgatgagtgtgggaaagagatttacagaacagggaagtctgaagagacacatgagagtccacaggagaaaccatcagttgtgcgacgagtgtgggaaaagatttacaggtcaggagatctgaagagccacatgagagtccacacaggagagaaaccattcagttgtgacgagtgtgggaaaagatttacacatcagggaggtctgaagagacacatgatagtccacacaggagagaaaccattcagttgtgacgagtgtgggaacagatttacaggtcagggagatctgaagagacacatgagggtacacacaggagagaaaccattcagttgtgacgagtgtggggaaagatttacacgtcagggacatctgaagagccacatgagagtccacacaggagagaaaccattcagttgtgatgagtgtgggaaaagatttacagaacagggaagtctgaagagacacatgagagtccacacaggagagaaaccaactgccaggacgagtgtggaaaagatttacaggtcagggagatctgaagagccacatgagagtccacagagagaaaccattcagttgtga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13465	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050527	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-