Gene detail

Detailed information of HS04754 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04754	PROTEASOME SUBUNIT ALPHA/BETA	chr6	4238977	4244820	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04754

tttgtgtctttttttttttttttACTGGCAGCCACAACTTTCCTCGATCGATCACTGATTTTCAATCGGGGCTCTGCTTCTTTCCCTGACGTCACATCCAGGAAAATAAATCAAGTTCTGATCCCGGTGCAGGCGGAGGAGACGCTTTCTGAAGCAAAGATGGTGAGTCTAACTaTTATTTTAATTGAATTCATCTATTTCACGTCATACAgATGACACATCGACGCAGTGAATAAGCCGCGCaGCGTGTTCGTGTTGCGTAATTTATCATAAAAACCTAGGAAACGCGGTTCGTTTACCCACCGATCGATCGTTAGCTCGCTAGCTCTGGCTGCTCTGTGAGTAAGCAAAACACCGCTAGCCGCTAACGTTAGCTGCACCGACTCCGGCTGAATGACGTGCCACAGAACCGCGTTAAGGCTTCACGTTTATATTGCATCATTTCACGaAAAACAACGTTTTAATGACCCaGTACGTTTACGGTGAGCGGCCCGaGACACAACgGAGGATTTAACCGGTAATTTCTCCGGTTAGCCGGCTAACGCCGAGCAGCTAGCAGCCGTTAGCCGAGAAATCAAGTCATCGCGTCTTTTTTTACTTTCGTTTGTTTTCCGTCACTTGTAACTCATTCTGTGGATGCAACACATTGAACTTTAGTTGTTGTTAATGTCACTAAAGcCCAACTGACGTCACAAAGCGTTTCTATCGGGACTCAGACTGGGAGGTGACGTCACACTGAGCATCGAGGACGAGTCCATCTAGTTTAATATCCTCAAAGTAGAACAAAAACACCGTAACATATATTATACATGAAGCTAAAAGCCCAACTGACGTCTGCACACGAGTCCCTGTCAAATGTGTTGAAAAGAGACTTCTTAAAACgtgtgtgtgtgtgtgtgtctctctgtctctctctctgtgtctctctctctctatgtctctctctctctgtctgtgtgtgtgtctctctctctctctgtgtctctctctctgtctgtctgtgtctctctctctctgtctctctctctgtctgtgtctctctctctctgtctgtgtctgtctgtctctctctctctgtctctctctctgtctatgtctctctctctctctctgtctgtgtctctctctctgtctgtctctctctctctgtctctctctctgtctctctctgtctgtgtgtctctctctctctgtctctctctctctgtctgtctctctatgtctctctctctctctctgtctgtgtctctctctctgtctgtgtctctctctctgtctgtgtgtgtgtctctctctctgtctctctctgtctgtgtgtgtgtctctctctctgtctctgtctgtctgtctctctctctctctctgtctgtgtgtctctctctctgtctctctctgtctgtctctctctctctctctgtctctctctctgtctctctctctctctgtctctctctctctctgtctctctctgtctgtctgtctctctctctctgtctgtgtgtctctctctctgtctctctgtctgtctgtctgtctgtctctctctctctgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgaatccttgtcaaatgtgtTCAAAAGAGACTTCTTAAAACACAACAGATTATTATAAAGTGTGTGTTTTAATTTATACAAAGAGTGTGACGCTGACATGCGGATCATTTCCcAATATTTAACCATTTTTAGTTTCTTAATCTTAaagtgtttcaagaagtctctttttaacacatttgacaaggattcgtatacgcacacacacacacacacacacacacacacacacacaagccggcggtgcagatgGCAGCCGCAGGAGGACTTTAACGTGACCCCCGTGTCGCTCCACGTATTAGTCACGCGTTGCTGCTCGCCTCCGATTGGCTGAGCTCAGCATTCGGCTTCTCCATTATTCAGTCGTGGTAGAAATTGAAAACCTTCGTCTGGGAAGCGGCCGAGGCTCGCGTCGTCGTTACCTCGGCAACCGTGGCGATGCAAGGCGACTACGTGAGCTCGGCTCGGTGTGTTTCTGTACCGGCTTTTATTCTGAATGTCAAATGATGGCGTGTATTTTTaaATCTGtTTCTTTAGTTCCGCAACCAGTACGACAACGACGTGACGGTGTGGAGCCCGCAGGTGAGTCGCCTCAACGACGTGGAGATGAATCATTAAACTATGACTGTCGGGTTTATTCTGCTTCAGTCCTGGTTGTGACGCTATTAATTGAATAATGGACTTGTATTTAAAATTATTTCTGAAGCAGCTAAATTATTTAATCCTTAAATAGGAAAACTATGGAAATTATCGAAAATATTTGGCGCTCGTGTCGTGCAGGGCCGCATCCACCAGATCGAGTACGCCATGGAGGCCGTGAAGCAGGGCTCGGCCACCGTCGGGCTCAAGTCCAAATCCCACGCCGTCCTGGTCGCTCTGAAGGTACGACGCGTGGCGGCGGCGGACGCCCTCCAGACGCCGACGGGTTTACCACATTTACGTCATGTTTTGAGCCTAAAGTCAGACTTCAGTCTTGTTGCCCTTTTTATTTATTTTTTGGAAAGCATAAAGGGTGAAAGCAGGggagacatttagatatttttttagggggcagttcttcccccactgactgaactccaggggcatttacaattaaattgggggaaaataacatgtgaaactagaacgggcactcggtagagcgcataccttctcatatcacaagattggggattgaattatgaacattttggcattagttgccaattggatagaaattgaccgcgctatggtaaaaagaagattttgaccttttcatgaccttgacctttgaccctatcgatcccaaaatctaatcaaatggtctaataaccaatcatcccaccaaatttcatgcgattcggtttaatactttttgagttatgcgagtaacacgcatacaaataaataaataaatacacggcgatcaaaacattaccttctgcattttcaatgcgaaggtaacaacatgtaacctttgttaaaaaaaatacttatttaggcttacaggatatgagcaattgttataaaaattggcaacaattaaacaAAATgttaacaaaaaacataaatcatacaatcatattcaattttattcttatttatttgtggttatttattgtttttacgtttttttaaacaactattaacaattaaaatgtatttctttatttcttttttattatattgatttttttatgtgtgtacctagtagaggcaacacagataggacaataaaacaaaacgttattaaatgatctacattatgcggcatgttctgcccctctagtgacatcaggggcagcgttatacttctgaggagcagctttaccctGCTGACTTTCccACGCCGGGTAAAAGTGTGATCCTCCACTTAATGGAGCATTTAAATGTATCGTATAGCGtGTtattatatatatatataaaatatatatatatgtataAGGACGAGCGTTAGTCGGTGCCTGATGGTCTCGTGCCTCCTCAGAGAGCCCAGTCTGAACTGGCCGCCCACCAGAAGAAGATCCTCCACGTGGACAACCACATCGGCGTCTCCATCGCCGGACTGACCGCCGACGCCCGGCTGCTCTGGTGAGTCGCGGCCGCCTCTCCGTCGTCTCAACGTCGCCATTTTATCCACCTTCCTCGTCGCGAACGACCGTGAATCTCGTCTTCCGCAGTAACTTCATGCGCCAGGAGTGCCTGGACTCGCGGTTCGTGTTCGACCGGCCCCTCCCCGCGTCCCGCCTCGTCTCCCTCATCGGCAGCAGTATCCTCGAGCAAAGTGACACAAATACTCGTCTTTGTCACAAGTTGTAATGAGTGAAATGATTTGTGATCCTGAACCGCCGCTCCAGAAACCCAGATCCCCACGCAGCGCTACGGGAGGCGGCCCTACGGCGTCGGGCTCCTCGTCGCCGGCTTCGACGTGAGTGTCGTGATGATCGGAGTGGCGTCCGCGTAGGTTTgaTtTATATCCGTGCGCTCTGACCGTGTTGCCCCGCCCCCTCCTCCAGGACATGGGACCTCACATCTTCCAGACCTGCCCGTCGGCCAACTACTTTGACTGCAAGGCGATGTCCATCGGGGCGCGCTCCCAGTCCGCCCGCACCTACCTGGAGAGGTCCATGGACAAGTTCGCCGACTGTAAGACCGCCGACTTCTCCTTTTGACGTCTTTTATTCCTCTTGTCCGTCAAGACCTGGACCCCCTCGCCGCGTCGCCCTCACCTGGAAGTTCTTGAATTCAAGAAAGCgttgttgttgttgttgttgttTTCAGCTAATATGAACGACCTGGTCCAGCACGGCCTGCGCGCCCTCAGAGAAACTCTCCCCGCGGAGCAGGACCTCACCACCAAGGTACCCCCCCCCCCCTGATGTTGTCATCTTCTCATATGTACACAGGCATCTATcagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatggtcatttccaggcctggaaaagtcatggaaaaaacttgaatcataaaagttttggaaaagtcctggaaatttgttataatcacgtgttcatttaggccgagtttgaaataattcatatattttttaaagaaagacgctcaatatataagccggcgtccgctctcaatacgcaaagtgttctacattttttatgtttataccgagatttcagtttggtcatggacatttgttttaaagtcctggaaatccatcgtcaaaatgggtaagaaccctgATCTTCTGTCTCTTTCTTCCTTTCAGAATGTCTCCATCGGCATTGTGGGTAAGGACATGGAGTTCGTCATCTACGACGACGACGACGTCGCCCCGTTCCTGGAGGGACTCGAAGAGAGGCCACAGAGAAAGGTACCAAGAGAGCCGTTAtcctcctcctcctcctcttcctcACGGTTAGAGATGTGTGTCTTCTGAACACACAGATGTGCTTGTGGGTCACATCTTGGTCGGTTCAGACTCGTACCGTTaTGACATGTTCTCACGTTGTGGGGGCAGATAGCTGTGCGCATGTGCAGGAAAAAAAAGAAAAGATTTCCATGCTTTGTTTTGCTCACGAGTTTAGAAGTGTAGTTTCAGAGATGCATCTCTTTTAACACTTTAGAAAAGAAacactccggttcaaaagtcgaggctcacttagcaaaagaaaagataaacttagaaaatgtcctcatttttcaatgaagatcacattaaatgaatcataaatcctctctacatagttaatgtgtagatgactattctctggtgtgtaatgaagtctctacagaggtgtgtagaggcccatctccagtgttcttgtggtacattgtgttatcgcctgagaagactagcggaggggtagaaacccttttaatgtgagcgcagctgaaaacagttatgctgctgagagaagctctaaaactggccttcctttgagccacaagaagaacattaatatctcaaataaaaaatcgttatttataaccttgtcaatgtcttgactagattttatattaatttgataaataaaagtgagttcatggaaaacactaaattgtctgggcgaccccaaacttttaaacagtagtgtGTGTGTATATATATATTTGTTGTTGTTGTTCCCTGATGTTTGCGCTCTAAACATCCCTCTTGTGTGCGTCAGGTCATCCCGCCTGCAGATGAACCCGCCGCCGCgGGTCCAGAGGTCCCCGACGAGCCAATGGAACACtttgtgtctttttttttttttttACTGGCAGCCACAACTTTCCTCGATCGATCACTGATTTTCAATCGGGGCTCTGCTTCTTTCCCTGACGTCACATCCAGGAAAATAAATCAAGTTCTGATCCCGGTGCAGGCGGAGGAGACGCTTTCTGAAGCAAAGATGTTCCGCAACCAGTACGACAACGACGTGACGGTGTGGAGCCCGCAGGGCCGCATCCACCAGATCGAGTACGCCATGGAGGCCGTGAAGCAGGGCTCGGCCACCGTCGGGCTCAAGTCCAAATCCCACGCCGTCCTGGTCGCTCTGAAGAGAGCCCAGTCTGAACTGGCCGCCCACCAGAAGAAGATCCTCCACGTGGACAACCACATCGGCGTCTCCATCGCCGGACTGACCGCCGACGCCCGGCTGCTCTGTAACTTCATGCGCCAGGAGTGCCTGGACTCGCGGTTCGTGTTCGACCGGCCCCTCCCCGCGTCCCGCCTCGTCTCCCTCATCGGCAGCAAAACCCAGATCCCCACGCAGCGCTACGGGAGGCGGCCCTACGGCGTCGGGCTCCTCGTCGCCGGCTTCGACGACATGGGACCTCACATCTTCCAGACCTGCCCGTCGGCCAACTACTTTGACTGCAAGGCGATGTCCATCGGGGCGCGCTCCCAGTCCGCCCGCACCTACCTGGAGAGGTCCATGGACAAGTTCGCCGACTCTAATATGAACGACCTGGTCCAGCACGGCCTGCGCGCCCTCAGAGAAACTCTCCCCGCGGAGCAGGACCTCACCACCAAGAATGTCTCCATCGGCATTGTGGGTAAGGACATGGAGTTCGTCATCTACGACGACGACGACGTCGCCCCGTTCCTGGAGGGACTCGAAGAGAGGCCACAGAGAAAGGTCATCCCGCCTGCAGATGAACCCGCCGCCGCgGGTCCAGAGGTCCCCGACGAGCCAATGGAACAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00227	Proteasome	Proteasome subunit	Domain	Interproscan
PF10584	Proteasome_A_N	Proteasome subunit A N-terminal signature	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000426	Domain	Proteasome alpha-subunit, N-terminal domain	Interproscan
IPR001353	Family	Proteasome, subunit alpha/beta	Interproscan
IPR023332	Family	Proteasome alpha-type subunit	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR035144	Family	Proteasome subunit alpha 1	Interproscan
IPR050115	Family	Proteasome subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11599	PROTEASOME SUBUNIT ALPHA/BETA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005839	Cellular Component	proteasome core complex	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010498	Biological Process	proteasomal protein catabolic process	Interproscan
GO:0019773	Cellular Component	proteasome core complex, alpha-subunit complex	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-