| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| HS04719 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN | chr6 | 3472860 | 3477054 | + |
| CDS | |||||
| HS04719 | |||||
| Transcript |
| HS04719 |
| Protein |
| HS04719 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00385 | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | Domain | Interproscan |
| PF03732 | Retrotrans_gag | Retrotransposon gag protein | Family | Interproscan |
| PF13975 | gag-asp_proteas | gag-polyprotein putative aspartyl protease | Domain | Interproscan |
| PF17917 | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000953 | Domain | Chromo/chromo shadow domain | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR001969 | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR005162 | Domain | Retrotransposon gag domain | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR016197 | Homologous_superfamily | Chromo-like domain superfamily | Interproscan |
| IPR021109 | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR023780 | Domain | Chromo domain | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR041373 | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR053134 | Family | RNA-directed DNA polymerase homolog | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24559 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004190 | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0006508 | Biological Process | proteolysis | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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