Gene detail

Detailed information of HS04653 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04653	MYOGENIC FACTOR	chr6	2492830	2495228	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04653

ATGGAGCTGTCgGATATCTCGTTCCCCATCCCGGCCGCGGATGACTTCTACGACGACCCGTGCTTCAACACCAGCGACATGCACTTCTTCGAGGACCTGGACCCGCGGCTGGTCCACGTGGGCCTCCTCAAGCCGGActcctcctcctccccttgctcctcgccctccccttcctccacctcctcctcctcctcgtcctccCTGGCGCGCCACAACCACCAGGACCAGGACGAGCAGCACGTGCGCGCGCCCAGCGGGCACCACCAGGCGGGCCGCTGCCTGCTGTGGGCCTGCAAGGCCTGCAAGAGGAAGACCACCAACGCGGACCGGCGCAAGGCGGCCACGCAGCGCGAGCGCCGGCGGCTCGGCAAGGTGAACGACGCGTTCGAGTCCCTGAAGCGGTGCACGTCGGCCAACCCCAACCAACGGCTGCCGAAGGTGGAGATTCTGCGCAACGCCATCAGCTACATCGAGTCCCTGCAggcgctgctgcgcggcggcggcggcggggggccggacgacggcggcTTCTACCCGGCGCTGGAGCACTACAGCGGGGACTCGGACGCCTCCAGCCCGCGGTCCAACTGCTCCGACGGCATGGTGAGTTCAGGGACCGACCGCGCGCCTTTACGCGCCGCGAGTTTCTCTTTGGTTTATTTTAATTATTCAATATGTATTCGTTTCTTTTTGTTTGTGCCTTTGTGTTGGATTCATTCCTTAAATTAATCTGATCACATTTTAATTTCCACTTGAAACACAAATAAATAAATATTGATTGTTTTGGATCATTTTCTCTTTTATTATGAGATTTGAACAAAGTTCATAAATCTCAGTAATTTAAGATCAGAAGAAAAAAAATTGTTTAAAAGTGTTAGTTTGTTTCCGATTTGTTGCAAAAAAAAAATGTTGTGGTGGTAATTCAAAGTTTATTTTTCGTTAGATTTAATTCATTCTGTTCCAAATAAATAATTTACATGTTCAGGTTTTTAAAGGAAAACATgTATTTATGTTTTTAAAATGTAAAACGATGGAACACATTTTTACTTTTTAACGAACCAACATTTCGTTTTGATTTTTAAAAACTAAAACATAAAAAATAAAGACAGACTAACTTAACGCGTCACTATTATTATTTATTCATTCATTTAAAATACAAATTTCATTTTTTCGACAATAAAAAAAAGTTTTTACTTTCTGACAGTTTTTTGTGTTTTCTTCTTTTTAATTTGAAGTTTTAAAGTAATTTTTTGCTTTTGGACTTTTAAGTTTCTGGTTTTCTCTTCAGTTGAATATTAATATCACGCTGTAAGTTATTAAATGTATTTTGAACTAAATGAACTTCTTGTTTTGGTTCTGCAGACGGATTTCAACTCGACCTGCCAATCAAACCGGAGAGGAAGTTATGACAGCTCGTACTTCTCCGAGACGCCACGCGGTAAGAGACCCAGAACACCTCTGACGTTataataatgacgaggatattattgtaataataataatactaataataatactactaataataataatagtaataatacaaataataataataaaagtaataataataacaattgtaataataatacaagtaataataattattgtaataataatagtaataataatagtaatTAACCTGCATGGGCATTAAAACAAAAGACAATAAGCAGGAAAAACAAGTACAAATAATTAAATTAAATTAAATCTGAGCATGTTAATGATCCTAATGTACTTATTTATTTTATTGGCAGACAATATTAATTTATATTATTTAATTCAAAAAATGTTGTAGAAATTTAAATATGAGAACAATTTAATTAGTTTAATGAGCTATTAATGTTGAATAATCTCTATTACATAATTTTTTCTTTGGGAATTTAACTTTTAACACATTTGAATGAAATATAAATAAAGATTAATCCAGAAATGAAGAAAAGAACAGTttgttgtttttattattataataattattattattattTACAGTAAAAAACTATTTTTTTaAATTGAATTGAAGTTTTAAAAAGTGAATAAAAACAAGATAATAATACTGATTAAAGTGATTAAACAGACGCCCAGGAAGTTGTTTTTAAATATGAAAACAAACCTTTAAACTTCACCAACGAGGCGATGATGAATATTCATATTCAAATTCATGTTGTTCAGGTGTGAAGAGCAGCCGCAGCTCGGTGGTCTCCAGCCTGGACTGCCTGTCCAGCATCGTGGAGCGGATCTCCACAGACCACCACGGCCTGCTGCCGcctcctcctcctcctcctcctcctcctcTTCTGCTCCCCTCCGCCGGCCCCGGGGTCTCGCCGCCGGCCCCCGTTGTCGAGGCCCCCCCACCGCCCGCCAGCCAGGACCCCAACCTGATCTaccaggttcttATGGAGCTGTCgGATATCTCGTTCCCCATCCCGGCCGCGGATGACTTCTACGACGACCCGTGCTTCAACACCAGCGACATGCACTTCTTCGAGGACCTGGACCCGCGGCTGGTCCACGTGGGCCTCCTCAAGCCGGActcctcctcctccccttgctcctcgccctccccttcctccacctcctcctcctcctcgtcctccCTGGCGCGCCACAACCACCAGGACCAGGACGAGCAGCACGTGCGCGCGCCCAGCGGGCACCACCAGGCGGGCCGCTGCCTGCTGTGGGCCTGCAAGGCCTGCAAGAGGAAGACCACCAACGCGGACCGGCGCAAGGCGGCCACGCAGCGCGAGCGCCGGCGGCTCGGCAAGGTGAACGACGCGTTCGAGTCCCTGAAGCGGTGCACGTCGGCCAACCCCAACCAACGGCTGCCGAAGGTGGAGATTCTGCGCAACGCCATCAGCTACATCGAGTCCCTGCAggcgctgctgcgcggcggcggcggcggggggccggacgacggcggcTTCTACCCGGCGCTGGAGCACTACAGCGGGGACTCGGACGCCTCCAGCCCGCGGTCCAACTGCTCCGACGGCATGACGGATTTCAACTCGACCTGCCAATCAAACCGGAGAGGAAGTTATGACAGCTCGTACTTCTCCGAGACGCCACGCGGTGTGAAGAGCAGCCGCAGCTCGGTGGTCTCCAGCCTGGACTGCCTGTCCAGCATCGTGGAGCGGATCTCCACAGACCACCACGGCCTGCTGCCGcctcctcctcctcctcctcctcctcctcTTCTGCTCCCCTCCGCCGGCCCCGGGGTCTCGCCGCCGGCCCCCGTTGTCGAGGCCCCCCCACCGCCCGCCAGCCAGGACCCCAACCTGATCTaccaggttctt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF01586	Basic	Myogenic Basic domain	Family	Interproscan
PF12232	Myf5	Myogenic determination factor 5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002546	Domain	Myogenic muscle-specific protein, N-terminal	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR022032	Domain	Myogenic determination factor 5	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR039704	Family	Myogenic factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11534	MYOGENIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007517	Biological Process	muscle organ development	Interproscan
GO:0035914	Biological Process	skeletal muscle cell differentiation	Interproscan
GO:0045663	Biological Process	positive regulation of myoblast differentiation	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0048743	Biological Process	positive regulation of skeletal muscle fiber development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-