Gene detail

Detailed information of HS04609 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04609	SPHINGOSINE KINASE	chr6	1497299	1502517	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04609

ATGGAGAGgccgctgctgccgctgctgctgTCCGAGCTCCGCGTCGGGAACGCGGCGTGCGACGTGAGCCTGAGCCGGTCCCGGCTCGGCTGGAACAGGCGGCCCTCCGGCCCGGTGTACCGCCCGTTCAGACCCAGTAAGACCCGGAtgtgtgtgtctggtctgtgtgcgcgtgttgtgtctgtcgggccttttgaaaccacgtgacgtgctgtgaggtaaacaaaggacaggggggggtctgtatatatatatatatatatatatatatgtgtgtgtgtgtgtaactctctctatatatatgtatttatgtctctgtgtgtgtgtgtgtatatatatatatatatatatatatgcgtgtttatttgtgtgtgtgtgtaactctctatatatatgtatttatgtctgtgtgtgtgtaactctctctatatatatgtatttatgtctgtgtgtgtgtaactctctctatatttatgtctgtgtgtgtgtgtgtaactctctctatatatatgtatttatgtctgtgtgtgtgtaactctctctatatttatgtctgtgtgtgtgtgtaactctctctatatatatgtatttatgtctgtgtgtgtgtgtgcaggtgtgtctcacagcgtgttggtgtcagaggtcatctctgtccgagaggaggacagcgtcaggggaACAGACGACGGCAGCTGGACAACAAAGATCAGAGCGAGAGAAGCAAAGGACTGCAGGCCGGCCTTCACAGGTAAACACACCTGGAAACACGCTGACGCAACATCTGGAAACTCATTTAACAAAACACCTGGAAACACAGTCGCACAATATTCATAAACACCACTTTTAATGCACCTGGAAACGTACATGAAGACATATTTAACACATCTGGAAACACACCTGTACCTGCACTCACATTCAAAACACCTGGAAACACCTTGACGGTCACCTGGAAACAGGCATGAGAAAAACTAATCATAAAAAACACATGTTTGACCATCAAGTGACCATTTCTGTTGTGTGTCTGTTGTTGTGTGTCAGTGCTGTACGTGGAGAGGTGTCAGCAGCACCGCTGGCGGGGTGCCGAGGTCACCTTCACCTGTCCAGAGGCGGCGTTGTGTCGGCGTTGGGTCGGCGCCATCGGGGAGCAGCTCGCCGTCATCGGTACGACTTCACGCCGACTCCAACACACACGGGGTCGTGACATCTTCATCTTCATCAATGTTGTTGTTGTTGTCTTCAGCCAGCAGACCCAAGCGCCTGCTGGTCTACATCAACCCGTTCAGCGGGAAGCGGCGAGGACAGAGCGTCTACGAGCAGCAGGTGGCGCCGCTGTTCGCCCGGGCCGGCGTCTCCACGCACGTCATCGGTACCCCCCCCCGCCCCCCCTCACTTCCTGTTCCCGTGCCTCCCTCTTTAATCCGTCTGCGTTGCTTGTTGCCGTAGTGACGGAGCACGCCAATCATGCGAGGGACCACCTGAGGACGGAGGCGGAGCTTCAGAAGATTGACGGGTGAGAGTTTCAGTTGAACGGCCGGGTGGACCGCCAAAATAAAAGCACCAGAGACTTTTTTTACACCTTTGAGGCGACGAACGAGGCGAAGTAAAGCGCGCGTCTCCGCCCTCAGGGTGGTGTGCGTCGGGGGGGACGGCATGTTCAGCGAGCTGGTGCACGGGCTGGTCTGGAGGACGCAGGTGGACGGCGGCGTGGACCCCGGCGGGCCGGACGCGGCGCTGCTGCCGTGCTCGCTGCGCGTCGGGGTCATTCCTGCAGGTCAGGAAGCGACTCGACCTCTTTGACTCGTTCCTCCTCTAGAGGACACGGCGACTCCTCCGGGAGCATGAGGACTCTCATTGCACGttttcaatgcatttaaataattttagatgcctttaaataatgttttaatgcatttaaataattttagatgcctttaaatcattttacaatgcatttaaatcatttttttaatgtctttaaatcattttttaatgcatttaaatcattttcgatacatataaatcattttttaatgccttttaaatcatttttgtatacattttaaaAGATGTTATGCATTTAAATAGTTTTTTTATTTATCTAAATAATTTTCAATGCGCGTAAATAATTTTTCGACACGTTTAAATAATTTCCCGATGTGTTTCAGGGTCGACCGACTGCATCTGCTTCGCCACCGTGGGCGCCAACGACCCCGTGACCTCTGCGCTGCACATCATCGTGGGTCAGTACCACCACCGAATGTCATTCGCTGGAAACGGGAAACCTTGAGTGGCGGGGGGCGGGGTCCAACTGGGAGTTATTCACCCAAATAAAGACACTTTATTGTGAAAATCTTATAGCCAACATTGAACTGGATTTATATAATATTATAGCTATACGTTTCCCGTGATGTGGCTTTTTCCCATTTTATCAATAGAAAAATAACAAGTTTCATTCTGGAGGTTTAGTTTGAAACATGATTAAATATCTTTCTGATTTAAAGACCAACCAATGACTGAAGATGAATCTACAATGAAAATTATTGTCAGCTGTCTCGAATTTGCAGGATAAATTATATTTAGCCTCATTTAAATTAATAATTGTTTGTATCCTTTTCCAGTCGTTCCTCATGGTTCTGGCCTCTTGCTGCCCTCTAGTGGTGGTTCAAGGGAACTTCAGTGTCACCTTGTACAGGTCACTCGTTCTCTGTGaTGTAAAGTAGTCAAAACAAAACAACGGGGTTATAAAAATACACGCCAACATAAACATGTATGTAAAAACTGATCTTGTGGTCAAGGACACGAGGCACGAAAATAGAGTTCTAGTAAAATGGCATCCGCACGATGAGTAATTAAATACCATTCATTAAAACAAATATTTATTTTGTTTATAAAGAACCAGAAatacatatttacaaaactaattatatatatatatttttgtgtgtgaatatttaaaaaactgtgtgtgtatatatatatttctttttataaagcttaattttgtgtgtgtgtatatatatatatatatttgtatttttttataaacgtaatgtgtgtgtgtatatatatttgtatttttttataaacgtatgtgtgtatatatttatatatttcttttttataaaacttaattgtgtgtgtatatatttgtatttttttataaacgtaagtgtgtgtgtatatatttgtatttttttataaacgtaatgtgtgtgtgtatatatttatatatttcttttttataaaacttaattgtgtgtatatatatatatatatatatatTTGCATTTTTTTAATAAACGTAATGTGTGTGTGCCCTCAGGAGACTCTCAGCCGATGGACGTGTGCACCATCCACCACAACAACACCTTCCTGCGGTACTCCGTCTCGCTGCTGGGTTACGGTTTCTACGGCGACGTGCTGAGTGACAGCGAGAGGAAGCGGTGGATGGGCCCGTCCAGATACGACCTGTCAGGTACCACCAAGCTGATCCTTAaaggttactgcaaggagctttcaatgtgtgttgactttggcggcccctgtggacagaagcggtattgctccCCTGTGACCGTTGCTGTTGACTGCAGGTGTGAAGATGTTCCTGACTCATCACTACTATGAAGGAACGCTTTCCTACCTGCCGGCCACAGGCATCATGGGAACGCCGCGGGACGCCGCCAAGTGTCGATCTGGGTGAGACGGATGATGTATTTTTAAGTTTCAGTTTAGGACAAAACTGTAATtatttatatgtgtgcgtgtgttttatttcgaatatatatatatatatataaaaccaaactaactatttatatatatatttgtgtttatgtgaatatatattataatttctgttatatatatatatatatattagaaataaaaatgatatttttacaaaaattgtatttatctttatttgtgtgtgtgtatgtgtatatatatatatattcaacaaaaagaaacattggaaaaaataataataattcatatatacgtttgtgtatgtaagcgtgcgtatatatatatatgcacacatgtattattatttaaaaatgtgttatatatatataataaaaccaaagtaattatttatatatatatttgtgtttgtatgtgtacatatatttatatatacagtatacaaaaaaaagaaacatcgaaaaaaaatatatatataatctactatacgtttgtgtgtatatatgAAATATAAATTATTTATATAATCTACAAAACTGTAATTATTTATATATTTTGAGTATCTATCCATATATATATGTGTATATATATTTAAATTGCTACTATATAACACCGTCTGTATGTTTCCAGCTGTTTGGTCTGTCAGCAGAACGTGAAGCGACTTTCAGAGAAAGCCGAGCGGTACGAGGCGGACGAGGCGTCGGACATCGGTGAGTCGACCTGAAGCTCCTGGAACTCTGCAGCCAATCAACGTTGTCCTCTGGCAGCAGAAGAAGACTCCACTCTGTCGTTTTGTGGGGGTGTTTCTTTCAGAGAGTGAGGGCGAGTGGAGGACCATCAGAGGGAAGTTCTTGGCCATCAACGCTGCCAGCATGAGCTGCGCCTGCCCCCGCAGCCCCAAAGGCCTCAGCCCCGCCGCACACCTGGCCGACGGCACCACCGACCTCATCGCGGTGCGGAAATGCTCCCGCTTCGACTTCCTCCGGCACCTTTTGCGGCACACCAGCAAAGACGACCAGGTAACAGATACCACCCCCCAGAGAGAGACCTCCCCTTCCAGAACCTCCCTCACTGTCTCCGCTCTGCCTCTGGACCCCTAGTTCGACCTGACCTTCGTGGAGGTCCACCGGGTGCGGCGCTTCCGCTTCACGCCGCGTCACTGCCAGAGCGACTCGGACCTGGACCTGGACCTGGACATGCGGGAGAACGGCAAACGCCAGATCTTCCGCAAGATCTGCCGAGACCACCCGGCGTGCGGCTGCGCCCCCGCCTACAGCAGCTGGAACTGCGACGGCGAGATCCTGACCCCCGCGGCCATCGACGTCCGGTACGACGACCCCGAAGGAGTCCGTTTTACTTTCAGCAAATATTTTAACCCAGGTTTAAATGTCTTTAAGCTTCTTCTTCTTTGTTGGTTTTTTCCCAGGGTGCAATGCCAGTTGATCAAGCTGTTCGCGCGAGGGATCGAAGAACCAACGGTGTTTGAGGACCTCGCCAACCCCTCTGCAATAATGGAGAGgccgctgctgccgctgctgctgTCCGAGCTCCGCGTCGGGAACGCGGCGTGCGACGTGAGCCTGAGCCGGTCCCGGCTCGGCTGGAACAGGCGGCCCTCCGGCCCGGTGTACCGCCCGTTCAGACCCAgtgtgtctcacagcgtgttggtgtcagaggtcatctctgtccgagaggaggacagcgtcaggggaACAGACGACGGCAGCTGGACAACAAAGATCAGAGCGAGAGAAGCAAAGGACTGCAGGCCGGCCTTCACAGTGCTGTACGTGGAGAGGTGTCAGCAGCACCGCTGGCGGGGTGCCGAGGTCACCTTCACCTGTCCAGAGGCGGCGTTGTGTCGGCGTTGGGTCGGCGCCATCGGGGAGCAGCTCGCCGTCATCGCCAGCAGACCCAAGCGCCTGCTGGTCTACATCAACCCGTTCAGCGGGAAGCGGCGAGGACAGAGCGTCTACGAGCAGCAGGTGGCGCCGCTGTTCGCCCGGGCCGGCGTCTCCACGCACGTCATCGCCGTAGTGACGGAGCACGCCAATCATGCGAGGGACCACCTGAGGACGGAGGCGGAGCTTCAGAAGATTGACGGGGTGGTGTGCGTCGGGGGGGACGGCATGTTCAGCGAGCTGGTGCACGGGCTGGTCTGGAGGACGCAGGTGGACGGCGGCGTGGACCCCGGCGGGCCGGACGCGGCGCTGCTGCCGTGCTCGCTGCGCGTCGGGGTCATTCCTGCAGGGTCGACCGACTGCATCTGCTTCGCCACCGTGGGCGCCAACGACCCCGTGACCTCTGCGCTGCACATCATCGTGGGAGACTCTCAGCCGATGGACGTGTGCACCATCCACCACAACAACACCTTCCTGCGGTACTCCGTCTCGCTGCTGGGTTACGGTTTCTACGGCGACGTGCTGAGTGACAGCGAGAGGAAGCGGTGGATGGGCCCGTCCAGATACGACCTGTCAGGTGTGAAGATGTTCCTGACTCATCACTACTATGAAGGAACGCTTTCCTACCTGCCGGCCACAGGCATCATGGGAACGCCGCGGGACGCCGCCAAGTGTCGATCTGGCTGTTTGGTCTGTCAGCAGAACGTGAAGCGACTTTCAGAGAAAGCCGAGCGGTACGAGGCGGACGAGGCGTCGGACATCGAGAGTGAGGGCGAGTGGAGGACCATCAGAGGGAAGTTCTTGGCCATCAACGCTGCCAGCATGAGCTGCGCCTGCCCCCGCAGCCCCAAAGGCCTCAGCCCCGCCGCACACCTGGCCGACGGCACCACCGACCTCATCGCGGTGCGGAAATGCTCCCGCTTCGACTTCCTCCGGCACCTTTTGCGGCACACCAGCAAAGACGACCAGTTCGACCTGACCTTCGTGGAGGTCCACCGGGTGCGGCGCTTCCGCTTCACGCCGCGTCACTGCCAGAGCGACTCGGACCTGGACCTGGACCTGGACATGCGGGAGAACGGCAAACGCCAGATCTTCCGCAAGATCTGCCGAGACCACCCGGCGTGCGGCTGCGCCCCCGCCTACAGCAGCTGGAACTGCGACGGCGAGATCCTGACCCCCGCGGCCATCGACGTCCGGTACGACGACCCCGAAGGAGTCCGTTTTACTTTCAGCAAATATTTTAACCCAGGTTTAAATGTCTTTAAGCTTCTTCTTCTTTGTTGGTTTTTTCCCAGGGTGCAATGCCAGTTGATCAAGCTGTTCGCGCGAGGGATCGAAGAACCAACGGTGTTTGAGGACCTCGCCAACCCCTCTGCAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00781	DAGK_cat	Diacylglycerol kinase catalytic domain	Family	Interproscan
PF19280	CERK_C	Ceramide kinase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001206	Domain	Diacylglycerol kinase, catalytic domain	Interproscan
IPR016064	Homologous_superfamily	NAD kinase/diacylglycerol kinase-like domain superfamily	Interproscan
IPR017438	Homologous_superfamily	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Interproscan
IPR045363	Domain	Ceramide kinase, C-terminal domain	Interproscan
IPR050187	Family	Lipid Phosphate Formation and Regulation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12358	SPHINGOSINE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001727	Molecular Function	lipid kinase activity	Interproscan
GO:0001729	Molecular Function	ceramide kinase activity	Interproscan
GO:0006665	Biological Process	sphingolipid metabolic process	Interproscan
GO:0006672	Biological Process	ceramide metabolic process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016310	Biological Process	phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-