Gene detail

Detailed information of HS04580 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04580	DUAL SPECIFICITY PROTEIN PHOSPHATASE	chr6	969549	971936	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04580

ATGCTCGACAAGCTGCAGCTCGACCCGGTAATGGCGGTCAGCAAGACGGCGGGCTGGCTGCGCGAGCAGCTGGAGGCGCGGCGGCGGGACGACGGGCTGCTGCTGATGGACTGCCGGGCCCAGGAGCTGTACGAGGCGGCGCACGTCGACGCCGCCATCAACGTGGCCATCCCGAGCCTCATGCTGCGCCGGCTGAAGAAGGGCAACCTGCCGGTGCGCGCGCTGCTGTCGGACGGCGCGGACCGGGAGGAGTTCGTGCGCCGGTGCACGACGGCCACCATCGTGCTGTACGACGAGGCCAGCCGCGACTGGAACGAGAACGTGGACGGCGGCTCGGTGCTCGGGCTGCTGCTGCGGAGCATGAAGGACGAGGGCTACACGGCCTTCTACCTGGAGGGTGAGCACCGCGCGGGCGGGCGGCGCGAGGCGGCGGGGCGCAGTGTTGTCATTCGGGTTGTTGACAGTTTAAAAAAGTGTTTGTTGGAAACTTGAGGCTGTGAAACTTTCAGAAGAGAAGAAAACAAACATAAATATCATGCGCGAGTTTCATTTCTGTTTTTATTGCGCAGAGACGGAAACGCGCGCGCGTTGCTGTGAGTTGTTGACAGTTTCATGACATTAAAAACATGAAGGTGCAGAACAGAAAAGAAACAGATATAtgttgttgttgttgttgCATAACGCGCACGCCTCGCACTCATGCAGTATGTGTTTCCGCCACCAGGGGGCTTCAGTACGTTCCAGGCGGAGTACCCGGGTCTGTGCGACACCCTCCTGGACGGCGGCTCCCCCGCCGCGCAGGTGCTGGGCCTCGGCGGGCTGCGCATCGGCTCCGACTCCTCGGACATCGAGTCGGACTGGGAGCCGAGCAGCGCCACGGACTCGGACGGCAGCCCGCGGTCCGCCCCGCGGCCGCCGCtGCCCTCCTGCTTCCCGGTGGAGATCCTGCCCCACCTCTACCTGGGCTGCGCCAAGGACTCCACCAACCTGGACGTGCTGGAGGAGTACGGCATCAAGTACATCCTCAACGTCACGCCCAACCTGCCCAACCTCTTCGAGCACGCCGGGGACTTCAAGTACAAGCAGATCCCCATCTCGGACCACTGGAGCCAGAACCTGGCGCAGTTCTTCCCCGAGGCCATCGGCTTCATCGGTGAGTGAGCTCCGCTTCAGACCCCgggggtctcaggcctctgggggtctcaggcctctgggggtctcaggcctctgggggtctagggcctctgggggtctcaggcctctgggggtTAGGGTTAGTTTTTTTTaAAGTTGTTAAAATGCCAGAAAACCACAAATCATCTTCAAGTTGGTCGTTGTGTCTGAAGTCAAACAACCGATCCCCACATCTACAAGAGCTGTAAAGTGACTTCATTACCCCCCCaCCCcccccacacacacacacactcagcagacaTGGCGGTGTGACAGGAAGTGGAGCCGTGATGTTATTCACGGCCGTGGGCAGGAAGTTCCCTTTGTGCTCTTAGAGATTAGAGGAAGCGTCCCCGGCTGGATCTAATCTCATCGGGGGGGGGGGGGGgCTCTTAACGGCCTGTTGACTTCACAGGGAGACGTCCTCGTGTCCCCGGGCGATGGGGTAATTGCAGGCACAAAGGGCGGCGTTGAAACAGGAGAATGGGGGGGGGGgTCATTTGAGTGCAACAGGAAGGATGTGGCATTGAAAGTAATCTAGGACATGCCCCCCCCCCCCCcTCCACACTACAAAAGGAGCCATTTACAGGCCTGTAGACGTCCTGCTGGCCTCGTGACGCCCAACGGCCAGGAGAACAACAAACAACTAAATGACAAACAACAACTAAGGAATgtctcccccccatgtttgttgactgacaaggacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttaacggcctccaCTTCGTTGCCTGCCGGACGCCGCGTGCCTCTAACGTGTGCGCCCCTTTCCCCCGTCTTGCAGACGAGGCTCGGGGCCGGCGCCTCGGCGTGCTGGTGCACTGCCTGGCGGGCATCAGCCGCTCCGTCACCGTGACGGTGGCCTACCTGATGCAGAAGCTCCACCTGTCCATGAACGACGCCTACGACATCGTGAAGACCAAGAAGGCCAACATCTCGCCCAACTTCAACTTCATGGGCCAGCTGCTGGACTTCGAGCGCACGCTGGGCCTCGAGGGCCCGTGTGACAACCGCGTGGCGGCGCCGCCCGGCCCGCCGCTGTACTTCACCACGCCCACCAACTACAACGCCCTGGGCTCCACGATGCTCGACAAGCTGCAGCTCGACCCGGTAATGGCGGTCAGCAAGACGGCGGGCTGGCTGCGCGAGCAGCTGGAGGCGCGGCGGCGGGACGACGGGCTGCTGCTGATGGACTGCCGGGCCCAGGAGCTGTACGAGGCGGCGCACGTCGACGCCGCCATCAACGTGGCCATCCCGAGCCTCATGCTGCGCCGGCTGAAGAAGGGCAACCTGCCGGTGCGCGCGCTGCTGTCGGACGGCGCGGACCGGGAGGAGTTCGTGCGCCGGTGCACGACGGCCACCATCGTGCTGTACGACGAGGCCAGCCGCGACTGGAACGAGAACGTGGACGGCGGCTCGGTGCTCGGGCTGCTGCTGCGGAGCATGAAGGACGAGGGCTACACGGCCTTCTACCTGGAGGCAGGGGGCTTCAGTACGTTCCAGGCGGAGTACCCGGGTCTGTGCGACACCCTCCTGGACGGCGGCTCCCCCGCCGCGCAGGTGCTGGGCCTCGGCGGGCTGCGCATCGGCTCCGACTCCTCGGACATCGAGTCGGACTGGGAGCCGAGCAGCGCCACGGACTCGGACGGCAGCCCGCGGTCCGCCCCGCGGCCGCCGCtGCCCTCCTGCTTCCCGGTGGAGATCCTGCCCCACCTCTACCTGGGCTGCGCCAAGGACTCCACCAACCTGGACGTGCTGGAGGAGTACGGCATCAAGTACATCCTCAACGTCACGCCCAACCTGCCCAACCTCTTCGAGCACGCCGGGGACTTCAAGTACAAGCAGATCCCCATCTCGGACCACTGGAGCCAGAACCTGGCGCAGTTCTTCCCCGAGGCCATCGGCTTCATCGACGAGGCTCGGGGCCGGCGCCTCGGCGTGCTGGTGCACTGCCTGGCGGGCATCAGCCGCTCCGTCACCGTGACGGTGGCCTACCTGATGCAGAAGCTCCACCTGTCCATGAACGACGCCTACGACATCGTGAAGACCAAGAAGGCCAACATCTCGCCCAACTTCAACTTCATGGGCCAGCTGCTGGACTTCGAGCGCACGCTGGGCCTCGAGGGCCCGTGTGACAACCGCGTGGCGGCGCCGCCCGGCCCGCCGCTGTACTTCACCACGCCCACCAACTACAACGCCCTGGGCTCCACG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00581	Rhodanese	Rhodanese-like domain	Domain	Interproscan
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001763	Domain	Rhodanese-like domain	Interproscan
IPR008343	Family	Mitogen-activated protein (MAP) kinase phosphatase	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036873	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10159	DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0008330	Molecular Function	protein tyrosine/threonine phosphatase activity	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0017017	Molecular Function	MAP kinase tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0033550	Molecular Function	MAP kinase tyrosine phosphatase activity	Interproscan
GO:0043065	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0043409	Biological Process	negative regulation of MAPK cascade	Interproscan
GO:0060420	Biological Process	regulation of heart growth	Interproscan
GO:0070373	Biological Process	negative regulation of ERK1 and ERK2 cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-