Gene detail

Detailed information of HS04519 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04519	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	chr5	27794319	27796644	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04519

atgataaaaaggaggaagagaagaaatacgaggacaagaaggacgagaagaaggaggagaagaaggatgataaaaaaagataaagataaaaagaaggaggagCCCCCGTAAGTACACCATTAGAGGCAGTAGGTCTCCTGGGACTTTGCTGGGTGAACCATGAGCAGCAACTCAAAGTCACGCCGAGTTGTCTCCAGGAAAGAGATCTGGATTATGGATCCGGCCGCAGACCAGTACTACAAGTGGCTGACCGTCATCGCAGGCCCGGTGTTCTACAACCTCATGATGATCGTCACCAGGTACTTTCCTCTTTATTTTCATCCACCGAGCTTCAACTCTTTTCTCTTTATTCAACGTGTCCTGCTGGTCTTCCAGAGCCTGTTTCAACGAGCTCCAGGATAAGTACACCAACCTCTGGCTCTTCCTGGACTACACCACCGACTTCATCTACTTCACGGACACGTTCGTCAGGTCGAGAACAGGTGGGGTTCCAGACAGAGTTTAAATGTGTGCACCATAGAATTAGGAATGAACGGGACATGTGTCTGAGTCATTGGGACCGGTGACGCTTCACAGAAAAAGCTCAAATGCTTGAAGAAGTATAAGAGAAACACCGGATCAACCTCCAGTAATGCAACATAGGTACGGAAAGAAGAGCTAAAAAAGATGAAACTGACTTATTAAGATCGCCTGGGTCTGAAATTATTAAAAGTTAGAACAACCGACTTCATATCAGAAGTGGACGTCGTCACGTGGCTGTCCTCTAACCAGTGTACTGTCGCTTTAAAGCCTGCTGGGACAAACACGCTAGTGAGTCAGCTAGCGTGTTTGTCCCAGCAGGCTCTCATGCTCCACTGGGTCCAGAGGATCGCAGTGTGCCGTCCACGTGGACCAGCTCCTGTTCTGTGGATGGGGACACCAGGCTGGGCTCCTGACGCTGTGCTTGTCCCCAGGTTACCTGGAACAAGGTCTGCTGGTGAAAGATGCCAAGAAACTGAGAGATAAATACAGAACGACCTCTCAGTTCAAATACGACATGATCTCCATGATACCCACCGATCTGCTGTTTCTGAAGTTCGGATACAACAACCCGGAGTTCAGATTCAACCGTCTTTGCAAAATCTCGAGGCTTTTTGAGTTCTTTGAACGGACTGAAACCAGAACCAGCTTCCCGAACATGTTCCGCATCAGCAATCTCGTGCTTTACATCCTCGTTATTATCCACTGGAACGCTTGTATGTTCTTTGCCATTTCGAAAACCATCGGTTTTGGAACCGACACGTGGGTATACCCCAACATCAGCCACCCCGAGCACGGCCGCCTGGCCAGGAAGTACATCTACTCCCTGTACTGGTCCACTCTGACCCTCACCACCATCGGAGAGACGCCTGCGCCCGTCAGGGACATTGAATTCGTCTTCGTCATTGCCGACTTCCTCACGGGCGTGCTGATCTTTGCCAGTATTGTCGGTAACGTCGGTGCCATGATCTCCAACATGAACGCCTCCCGTGCCGAGTTCCAGGCGAAGATCGACTCCATAAAGCAGTACATGCAGTTCCGAAAGGTCACCAAAGACCTGGAGGCCAGGGTCATCAAGTGGTTTGACTACCTGTGGACAGAGAAGAAGACCTGCGACGAGAAGGAGGTTCTGAAGAACCTGCCGGACAAGCTCAAGGCCGAGATCGCCATCAACGTCCATTTGGACACGCTGAAGAAAGTTAGTATTTTCCAGGGTTGCGAAGCCGGCCTGCTGATCGAGCTGGTGCTGAAGCTGCAGCCGCAGGTGTTCAGTCCCGGCGACTACATCTGCAAGAAGGGCGACATCGGCCGGGAGATGTACATCATCAAGGAGGGGAAGCTGGCCGTGGTGGCCGACGACGGGGTCACGCAGTTCGTCGTGCTCAGCGACGGCGCGTACTTCGGGGAGATCAGCATCCTGGGCATCAAGGGCAGTAAAGCGGGGAACCGGAGAACCGCCAACATCCGGAGCGTGGGCTACTCGGACCTCTTCGCCCTGTCCAAAGACGACCTGGTGGAGGCGCTCACGGAGTACCCGGATGCCAAGAAGGCCCTGGAGGAGAAGGGCAAGGCCATCCTGATGAAGGACAACCTGATGGACGAGGCCGCGGCCGGCGCCGAGCCCAAAGACCTGGAGGAGATGATCGTCACGCTGCAGGGAAACCTGGACCTCATGCAGACCCGCTTCGCCCAGCTGGCGGCGGAGGTCAGCTCCGCCCAGAGCCGCATGAAGCAGAGGGTCACGCAGGTGGAGGCCCGGGTCAAGTCCATCCGCCCCGAGCACCTGGACCTGCACGGGAAGGTCCAGatgataaaaaggaggaagagaagaaatacgaggacaagaaggacgagaagaaggaggagaagaaggatgataaaaaaagataaagataaaaagaaggaggagCCCCCGAAAGAGATCTGGATTATGGATCCGGCCGCAGACCAGTACTACAAGTGGCTGACCGTCATCGCAGGCCCGGTGTTCTACAACCTCATGATGATCGTCACCAGAGCCTGTTTCAACGAGCTCCAGGATAAGTACACCAACCTCTGGCTCTTCCTGGACTACACCACCGACTTCATCTACTTCACGGACACGTTCGTCAGGTCGAGAACAGGTTACCTGGAACAAGGTCTGCTGGTGAAAGATGCCAAGAAACTGAGAGATAAATACAGAACGACCTCTCAGTTCAAATACGACATGATCTCCATGATACCCACCGATCTGCTGTTTCTGAAGTTCGGATACAACAACCCGGAGTTCAGATTCAACCGTCTTTGCAAAATCTCGAGGCTTTTTGAGTTCTTTGAACGGACTGAAACCAGAACCAGCTTCCCGAACATGTTCCGCATCAGCAATCTCGTGCTTTACATCCTCGTTATTATCCACTGGAACGCTTGTATGTTCTTTGCCATTTCGAAAACCATCGGTTTTGGAACCGACACGTGGGTATACCCCAACATCAGCCACCCCGAGCACGGCCGCCTGGCCAGGAAGTACATCTACTCCCTGTACTGGTCCACTCTGACCCTCACCACCATCGGAGAGACGCCTGCGCCCGTCAGGGACATTGAATTCGTCTTCGTCATTGCCGACTTCCTCACGGGCGTGCTGATCTTTGCCAGTATTGTCGGTAACGTCGGTGCCATGATCTCCAACATGAACGCCTCCCGTGCCGAGTTCCAGGCGAAGATCGACTCCATAAAGCAGTACATGCAGTTCCGAAAGGTCACCAAAGACCTGGAGGCCAGGGTCATCAAGTGGTTTGACTACCTGTGGACAGAGAAGAAGACCTGCGACGAGAAGGAGGTTCTGAAGAACCTGCCGGACAAGCTCAAGGCCGAGATCGCCATCAACGTCCATTTGGACACGCTGAAGAAAGTTAGTATTTTCCAGGGTTGCGAAGCCGGCCTGCTGATCGAGCTGGTGCTGAAGCTGCAGCCGCAGGTGTTCAGTCCCGGCGACTACATCTGCAAGAAGGGCGACATCGGCCGGGAGATGTACATCATCAAGGAGGGGAAGCTGGCCGTGGTGGCCGACGACGGGGTCACGCAGTTCGTCGTGCTCAGCGACGGCGCGTACTTCGGGGAGATCAGCATCCTGGGCATCAAGGGCAGTAAAGCGGGGAACCGGAGAACCGCCAACATCCGGAGCGTGGGCTACTCGGACCTCTTCGCCCTGTCCAAAGACGACCTGGTGGAGGCGCTCACGGAGTACCCGGATGCCAAGAAGGCCCTGGAGGAGAAGGGCAAGGCCATCCTGATGAAGGACAACCTGATGGACGAGGCCGCGGCCGGCGCCGAGCCCAAAGACCTGGAGGAGATGATCGTCACGCTGCAGGGAAACCTGGACCTCATGCAGACCCGCTTCGCCCAGCTGGCGGCGGAGGTCAGCTCCGCCCAGAGCCGCATGAAGCAGAGGGTCACGCAGGTGGAGGCCCGGGTCAAGTCCATCCGCCCCGAGCACCTGGACCTGCACGGGAAGGTCCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF16526	CLZ	C-terminal leucine zipper domain of cyclic nucleotide-gated channels	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018488	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR032406	Domain	Cyclic nucleotide-gated channel, C-terminal leucine zipper domain	Interproscan
IPR050866	Family	Cyclic Nucleotide-Gated Cation Channel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45638	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005222	Molecular Function	intracellularly cAMP-activated cation channel activity	Interproscan
GO:0005223	Molecular Function	intracellularly cGMP-activated cation channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017071	Cellular Component	intracellular cyclic nucleotide activated cation channel complex	Interproscan
GO:0030553	Molecular Function	cGMP binding	Interproscan
GO:0044877	Molecular Function	protein-containing complex binding	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0098655	Biological Process	monoatomic cation transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-