Gene detail

Detailed information of HS04504 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04504	XRP2 PROTEIN	chr5	27475927	27479136	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04504

ATGGGCTGCTTCTTCTCCAAGAAGTGCAAGTGGAAGTCCTCCGAGAGGGAGGAGCGCGCGCCCACCTCGACGACGGGGGAAACCGCGACGGCAACGGGCAACGCGGGTCCCCTTGGCAACAGCAGCGAGGAGGCGCCGAAGCAGTACAGCTGGGACACGAGGGAGAAGGTGACGTCATCATCACACTAATATACCACAACAATAACGGAGGCTCCGTAACAACACGGCTGGGACACGGGGGAGAACGGGATGGAAACAAATCtaatgtatataaataataataattatatatatcataattaatataatgttattagaggctccgaagcagtacgagacataatatataaaataattataatatatgataataataatacagccataagtaataattatatatatatttataacagttataactaataatTTCAGCCATCTAGCAGTTATCATTAATAATAATATTTAACGTTTTAATATAGTGGTTTAAATGGTACTTAACGCACCTGACAAGGTAAACAACAAACAAGAGAAGCATCATTTGTATTATTTTAACCTGATTTACTGAGAAGCTGCTGCGGTTTATGTTCTGAGATTATTAGAAAATATATTGACTCACAGTAAATATACTCAATATCGGGATTATAAATGTTAAATGTGAAATACATATTGTTCACATGTACACAATGTTATTTTAAGACATCACTCAATCACGGACACGTCTTAATGTCACGGCCGTGCACAAAGAGGAGGAGGAGCAGGAAGAGTCGAGCTATGATCTCCTTATGGGATTACAACTCTGTGCAGCtcttctctttctcctcctcctccttcttcttctcctcctacttcttttctttcttcttctttcttcttcttcttctcctacttcttttctttcttcttttttcttcttcttcttctcAAACCGGTCGGACCACATGAAACACGCTCAGCATCCATCTCCGTGTCAATAGTTTGATGAGGAGCCTGAAAGCATTTGAAGTGGTTTAAAGAGCCACAGTGAGGTGTTAGAGTACTGAGGCCACTGTGGCCCCTGTGTGGCCCTGCTGGAGCACCAGTACATACCTGTAGTGAAGTACAGCTGGATGAGTCCCTCGGGGTTCTCCTTTTTTTAGTCTCCATAAAGTCCAATAGAAAAGCCCAGAGTTGCCTGACTGCTCTCTGCTGGTGTCTAAGTGCAGTTCCCGCCCCGGCCTCCAGGTGGACCCTAAGGACTACATGCTGTCAGGGCTGCGCGGCGTGACGGCGGGCCGGCTGCCCGGCGCGCTGCGCGGCCAGCAGTTCGTGATCCAGGACTGCGAGGACTGCGACATCTACGTGTTCGACCACTCGGCCGCCGTCACCGTGGACGACTGCTCGCGCTGCCGCGTGTTCCTCGGCCCGGCCCGCGGCAGCGTGTTCTTCCGCAACTGCCGCGACGTCAAGTGCGCGGTGGCGTGCCAGCAGTTCCGCACGCGGGACTGCAAGAAGATGGAGGTGTTCCTGAGCTGCGCCACGCAGCCCGTCATCGAGTCCTCGGCCGGCGTGAAGTTCGGCTGCTTCCAGTACTTCTACCCCGAGCTGGCCTTCCACTTCAAGGACGCCGGCCTGAGCGTCTTCAACAACAACTGGAGCAACGTGCACGACTTCACGCCGGTGGCCGGCGAGAACAACTGGAGCCTCCTGCCGGAGGGCGCGGCCGTGCTGGACTCGGTGCCCACGCCGGACCCCGGCTCCGAGTTCAAGGGGGTGCGCGTCTCCGCCGACCCTGAACGCAGCATCGTGCCTCTGACCAAGGGCGGCCGGAGGAAGGCCAGCGAGGAGTCCTGCCTCTTCGTCTTCTTCGCCGGAGAATACGCCACCGCCAACGCCCGCAAACTGATCGACGAGGTGAGACTCACagctgcgttccctcacctgaccaccaggggcgtggctacaagtctatgcttcatgtgttgaagctgcattctctctcctgaccaccagggggctcctctggttgtatagaagtctatgcttcatgtgttaaagctgcattctctctcctgaccaccagggggctcctctggttgtatagaagtctatatagtgactctacttctcttgatgtattcctcagtaaacattgtaaacatgagttcatgtctcagtctctagtttcaagtcttcttctaaacagcatgatgtcgtcatttatactttatggtctgtagagtcagaccgtgaagcagggggcgctttagggcgtggctacaggtgactgacaggtgaaaccagagatgtgtacagtgtctctaGAAGTTGTATCACTTCCTTATTCCACATGCATGTCTCATCAGGAGGAAGTGGAGCCTCTGGGTGTCTAGAGTTTCATATTCATCACACGAGACGTCTCATTGGTCGGTGAAGCGTGACCAATGAGACGTCTCATTGGTCACGCTTCACCGACCAATGAGACGTCTCCAAGATCTACGAGCGTTCCTGAGCTGCTCTTTAGTTTCTATGACAACATTCCAGAGATGTTTGTGACACtgtaaacatgtgtgacctcatcacagagacacacagagacacacacacacagagacacacacacacacacagacacacacacagacacagagacacacacagacacacacacacagacacacacacagacacacacacacagacacagagacacacacagacacacacacacacacacagacacacacacagacacacacacagagaccccccctctgatgctctggtcctctcctccagacCTCGGCTCGGGGCTTTGTTCTGATCCAGACCAAGGAGGTCTCCATGAGGCCCGACGACGTGAGCCGGGTGTTCCAGACCAGTGCAGAGGACCTGGTGGACTGCGTCACTAAAGGtgtgtgttgttgttgttgttgttgctgctgctgCACACAGCTGTGTTGTAACCTCTCTCCTCCTGAAGGAGCCGTCATCGCTCTGGAGCTGAGTGGAGACGGCGTGGTGGAGGCCTGCAGGAGCATCGCCAGAGACGTGTTCAGTGGCACGAAGGTCACGACCTCCTCTTTGATcaacaacaacaacaacaacgacaacaaGCAGCCTCACACAGGATGTCTTCCTTTGTTCCAGGTCTTCGTCTCCGATAACAAGAACACTTCCTCCAGAGACATCGACAGCTTCTTCAACTTCGCCGACATGCAGATGGGCCTGATGGGCTGCTTCTTCTCCAAGAAGTGCAAGTGGAAGTCCTCCGAGAGGGAGGAGCGCGCGCCCACCTCGACGACGGGGGAAACCGCGACGGCAACGGGCAACGCGGGTCCCCTTGGCAACAGCAGCGAGGAGGCGCCGAAGCAGTACAGCTGGGACACGAGGGAGAAGGTGGACCCTAAGGACTACATGCTGTCAGGGCTGCGCGGCGTGACGGCGGGCCGGCTGCCCGGCGCGCTGCGCGGCCAGCAGTTCGTGATCCAGGACTGCGAGGACTGCGACATCTACGTGTTCGACCACTCGGCCGCCGTCACCGTGGACGACTGCTCGCGCTGCCGCGTGTTCCTCGGCCCGGCCCGCGGCAGCGTGTTCTTCCGCAACTGCCGCGACGTCAAGTGCGCGGTGGCGTGCCAGCAGTTCCGCACGCGGGACTGCAAGAAGATGGAGGTGTTCCTGAGCTGCGCCACGCAGCCCGTCATCGAGTCCTCGGCCGGCGTGAAGTTCGGCTGCTTCCAGTACTTCTACCCCGAGCTGGCCTTCCACTTCAAGGACGCCGGCCTGAGCGTCTTCAACAACAACTGGAGCAACGTGCACGACTTCACGCCGGTGGCCGGCGAGAACAACTGGAGCCTCCTGCCGGAGGGCGCGGCCGTGCTGGACTCGGTGCCCACGCCGGACCCCGGCTCCGAGTTCAAGGGGGTGCGCGTCTCCGCCGACCCTGAACGCAGCATCGTGCCTCTGACCAAGGGCGGCCGGAGGAAGGCCAGCGAGGAGTCCTGCCTCTTCGTCTTCTTCGCCGGAGAATACGCCACCGCCAACGCCCGCAAACTGATCGACGAGacCTCGGCTCGGGGCTTTGTTCTGATCCAGACCAAGGAGGTCTCCATGAGGCCCGACGACGTGAGCCGGGTGTTCCAGACCAGTGCAGAGGACCTGGTGGACTGCGTCACTAAAGGtgtgtgttgttgttgttgttgttgctgctgctgCACACAGCTGTGTTGTAACCTCTCTCCTCCTGAAGGAGCCGTCATCGCTCTGGAGCTGAGTGGAGACGGCGTGGTGGAGGCCTGCAGGAGCATCGCCAGAGACGTGTTCAGTGGCACGAAGGTCACGACCTCCTCTTTGATcaacaacaacaacaacaacgacaacaaGCAGCCTCACACAGGATGTCTTCCTTTGTTCCAGGTCTTCGTCTCCGATAACAAGAACACTTCCTCCAGAGACATCGACAGCTTCTTCAACTTCGCCGACATGCAGATGGGCCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986	TBCC	Tubulin binding cofactor C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006599	Domain	CARP motif	Interproscan
IPR012945	Domain	Tubulin binding cofactor C-like domain	Interproscan
IPR016098	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR017901	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR036223	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR036850	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR039093	Family	Protein XRP2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15440	XRP2 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0006892	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:1990075	Cellular Component	periciliary membrane compartment	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-