Gene detail

Detailed information of HS04500 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04500	GTP-BINDING PROTEIN HFLX	chr5	27433843	27437940	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04500

ATGACGCTGAGGAGGCTCCTCTCCTCGGGGCGCCGCGCGCACACCTGTCTGACGTCACTGGCTACCTGCGGCGGGTTCCCCCGCGCGCCCCCTGCGCGTGCGCTCAGAGCCGCGTCTCCCTGCCTACCAAGGGCATTCACGCTGTCCGCGTGCACGTGGAGGGACACGGACGACCTCGGTGGGGGCGCCGGTCTGCacgaggaagatgaggatgacgatgacgtcatcgatgacAGCGAGGTGGAGGAGCTGTTTCGCGCGCACGCGCCCGCAGGTCAGCAGCAGCACCGAGTGTTCGTGGTTCACCCCGATGTGAAGTGGGGGAGCCGGAAGCAGCACCTGACCACAGGTAGGTCGCACACCGGCCTCCAGgtgcgtgcacgtgtgtgtgtgcgcgcgtgcgtgcgCATCGCTCTCACCGTGGCGTCCCGCAGCGGAGCTGATGATGGCGGAGGCCGTGGGGCTCGTGAACGCGCTGGACGGCTGGAGGGTGGTGGAGCAGCTCATCATGTCCACCAAGACACCAGAGAAGAAGAAGATCTTCGGCAAAGGAAACTTCCAGACGCTGACAGGTCAGCcgtgcacgagcacgtgcacgagcacgtgcacgagcacgtgcacgagcacgtgcaGATCGATTGTTTGATAGGTTATTGATTGTGTTTCTCTCTGCAGATAAGATCAGACAGACGGCCGGAGTCACGGCGGTGTTTGTGAATGTGGAGCGACTGAGTCCTCCATCGGAGGTGAAGACAcctccctctgctcctccctctgctcctccctctgcacctccctctgctcctccctctgcacctccctctgctcctccctctgcacctccctctgcacctccctctggctcctccctctgctcctccctTTTTATGTGttaggggtcaggtttaggggtcaggGGTCATCCCAGACCCACACGTGGTCCCGATGTCgtcgttttgaagcctctagttttgcttcttgttcgtcgccatcttgttttttgcaaccggtgaacaggaagtgaccTCATCCCAAGGTTAACCGTGACTCCGCCTCTTCCCTCCGCCTCAGAGGGAGTTCGAGGAGGCCTGGGGGGTGAAGGTCCTGGACCGGTACTCCGTGGTCCTCCACATCTTCCGCTGCAACGCCCGAACCCGCGAGGCCAAGCTGCAGGTCTCTCTGGCCGAGATCCCGTTGCTACGGTGACCGCCACACGCCTCACGTGtgtttgtttgtttgtttgtttgtttgtCTGACCGTCTCCGTCTGGCTGCAGGTCTCGTATCAGGAGTGAAATGGCCGACTTGGACCAGCAGGGCGGGGGGGCGAGGTACATCGGAGGCTCAGGTAACTCCACCGCACCCCCCACGAACGCACGCGTCCGATTGGCCGCCCGGCCCTGATCCCCGCTCGCTGATTGGTTCGTGCAGGCGAGACACAGACGGAGGTGCGGCAGCGGCTGCTGAGGGAGCGCGAGATGAAGATCCGCTCGGCGCTGGAGACgctgagcaggaagcggcggctgctgagcaggaagcggcGCCGCAAGGAGCTGCCCACGGCGTCCGTGCTGGGCTACACCAACTGTGGTCCGCTCGCGGTTATATATTATATATTATATTTAGACACTAAGACAAGCCATAATGTCACGGGAGACATGTTGAGATTTATTACACAACAGGAATaagtatcaatttaaaatgtttttaaagtattaatttgaaatgttttaaaagtattaatttaaaatgtttttaaagtattaatttaaaatgtttttaaagtattaatttaaaatgtttttaaagtattaatttaaaatgttcttaaagtattaatttaaaatgtttttaaagtattaatttaaaatgtttttaaagtattaatttaaaacttttaagaagtattaattCAATTAATTTCTCTAAACGCTGCAGTATCAGAGATTTCCTCTTTTTAAACTTAATTTAGTCAACAACAACAAGACAGAACAACAGTCATCACGACGAGTCCTAAATGTCACGCAGCGCCCTCTAGTGGACGATAAAGATATCTGTTAAAAAAGGGTTTTTCATTTAAAATTTGCAAAAATGTCTTATTTTGAGTTTCATTTTTCTAACAGGACTTTAGCTGATTAACTAAAatatttatatataggaaaatatatatatattctaaacatatatttgatataatatatatatacacaatataaatatatattatatatagaagtaaatattcatttatttatttatttattatCATCATCAACTGTCTTTGACTTCATTCTTCTGTCGTGGTGATTTTCATAAACATGATGAAATGAGAGTCTGTTCTCCCCGTTTCCGTCCAGGCAAGACGACGCTGATCAAGGCGCTGACGGGCGACGGCGCCCTGCAGCCGCGGGACCAGCTGTTCGCCACGCTGGACGTCACGGTGCACGCCGGCCGGCTGCCCAGTCACATGACCATCCTCTACGTGGACACCATCGGCTTCCTGTCGCAGCTGCCCCACCGCCTCATCGACTCCTTCTCCGCCACGCTGGAGGACATCAAACACTCGGTGAGCgaggaggaggaggaggaggaggaggaggTGTTGACGCGTCTGGTGGTCTCTGCAGGATCTGCTGATCCACGTCCGAGACATCAGCCACCCGGAGACGGAGAACCAGAAGGCCAACGTGCTGAAGGTCCTGGGCGCCATGCGGGTCCCCGAGCGGCTGCTGCTCTCCATGATAGAAGTCCACAACAAAACGGACCTGGTGCCTGAGTAAGACCTTTTTTCTTAAAGGGCCGGCGTCACTTCTGCACACGGCCAGGAGGCGGAGTCCGCCATGTTTCATGATACCTGTAGCAGGAAGAGGATCGGCCGTGTTTCCAGTGACTGATTCACTTTATGAACTGCTGCTGCTCTTCAACTATGTTTATTTATATCTCAATTCTGATTCTACATGTTTTTAAAGCAGTTCGTCATGTTGGTCAAAGTAGATCCTGAAGACACTTCGAGCCACAGGGCCacgcacttggaaagggggaggggcttagctgaggggtatttgtttagttgcaatctgcatcttcaccactagaGGTCCCTAAAgtacacgctgcccctttAAGGGAGGAGCAGCCTGGGACCTCCAGATGGAGGAAAACGTTCCAGCTGGTGGAGAGATTCAGTCTCAAATAACACGGGGTCTTCAtggtcctcatggtcctcgtagtcctcttggtcctcgtagtcctcttggtcctcggggtcttcgtggtcctcgtggtctttgtagtcctcgtggtcttcgtagtcctcgtggtcttcgtagtcctcgtggtcttcgtagtcttcgtggtcttcgtagtcctcgtggtcttcgtagtcttcgtggtcctcgtgatcttagtggtcctcgtggtcctcgtggtcttcgtagtcctcgtggtcctcgtgatcttagtggtcctcgtggtctttgtagtcttcgtggtcttcgtggtcctcttggtcctcgtggtcctcgtggtcttcgtggtcctcgtggtcctcgtggtcctcggggtcctcCCAGATTGATTGCGGTCCTGGTTCCCGTCCTGCAGCCTCCCCCCCCCGGGCGGCGCTCTGGCCGTCTCGGCGCTGCGGTGCCGCGGTCTGGAGGCGCTGACGGCGGCGGTGGAGGAACGGATCCTGGCGTCAACCGGGAAACGCTCACTGGACCTCAGCGTGGACCTCCGCTCGGCTGGCTTGAGGTGAGCCCGtcctcctcctgctcctgctcctcttcctcctcttcctcctcctgctcctcttcctcctcctcttcctcctgctcctcctcctcctcctgctcctcctcctcctcctcctGTGGTCTGTTGACGTGGAACAAGATGGCGTCTCCCAGCTGGCTCTACAGGGAGGCGGCCGTGCAGCGCGTGGAGGTGGACGCCGACGCCGGCTCGGCCGTGGTCACGGTCATCATCGGCGCCGCCGCGTACGGACGCTACAGGAAGCTGTTCCCGGGGAGCTGACGGAGGACGAGGGCGCCACacaacaacaacaacaacaacaacaacaacaacGCCTGATCCCTTCATGACGCTGAGGAGGCTCCTCTCCTCGGGGCGCCGCGCGCACACCTGTCTGACGTCACTGGCTACCTGCGGCGGGTTCCCCCGCGCGCCCCCTGCGCGTGCGCTCAGAGCCGCGTCTCCCTGCCTACCAAGGGCATTCACGCTGTCCGCGTGCACGTGGAGGGACACGGACGACCTCGGTGGGGGCGCCGGTCTGCacgaggaagatgaggatgacgatgacgtcatcgatgacAGCGAGGTGGAGGAGCTGTTTCGCGCGCACGCGCCCGCAGGTCAGCAGCAGCACCGAGTGTTCGTGGTTCACCCCGATGTGAAGTGGGGGAGCCGGAAGCAGCACCTGACCACAGCGGAGCTGATGATGGCGGAGGCCGTGGGGCTCGTGAACGCGCTGGACGGCTGGAGGGTGGTGGAGCAGCTCATCATGTCCACCAAGACACCAGAGAAGAAGAAGATCTTCGGCAAAGGAAACTTCCAGACGCTGACAGATAAGATCAGACAGACGGCCGGAGTCACGGCGGTGTTTGTGAATGTGGAGCGACTGAGTCCTCCATCGGAGAGGGAGTTCGAGGAGGCCTGGGGGGTGAAGGTCCTGGACCGGTACTCCGTGGTCCTCCACATCTTCCGCTGCAACGCCCGAACCCGCGAGGCCAAGCTGCAGGTCTCTCTGGCCGAGATCCCGTTGCTACGGTCTCGTATCAGGAGTGAAATGGCCGACTTGGACCAGCAGGGCGGGGGGGCGAGGTACATCGGAGGCTCAGGCGAGACACAGACGGAGGTGCGGCAGCGGCTGCTGAGGGAGCGCGAGATGAAGATCCGCTCGGCGCTGGAGACgctgagcaggaagcggcggctgctgagcaggaagcggcGCCGCAAGGAGCTGCCCACGGCGTCCGTGCTGGGCTACACCAACTGTGGCAAGACGACGCTGATCAAGGCGCTGACGGGCGACGGCGCCCTGCAGCCGCGGGACCAGCTGTTCGCCACGCTGGACGTCACGGTGCACGCCGGCCGGCTGCCCAGTCACATGACCATCCTCTACGTGGACACCATCGGCTTCCTGTCGCAGCTGCCCCACCGCCTCATCGACTCCTTCTCCGCCACGCTGGAGGACATCAAACACTCGGATCTGCTGATCCACGTCCGAGACATCAGCCACCCGGAGACGGAGAACCAGAAGGCCAACGTGCTGAAGGTCCTGGGCGCCATGCGGGTCCCCGAGCGGCTGCTGCTCTCCATGATAGAAGTCCACAACAAAACGGACCTGGTGCCTGACCTCCCCCCCCCGGGCGGCGCTCTGGCCGTCTCGGCGCTGCGGTGCCGCGGTCTGGAGGCGCTGACGGCGGCGGTGGAGGAACGGATCCTGGCGTCAACCGGGAAACGCTCACTGGACCTCAGCGTGGACCTCCGCTCGGCTGGCTTGAGACGTGGAACAAGATGGCGTCTCCCAGCTGGCTCTACAGGGAGGCGGCCGTGCAGCGCGTGGAGGTGGACGCCGACGCCGGCTCGGCCGTGGTCACGGTCATCATCGGCGCCGCCGCGTACGGACGCTACAGGAAGCTGTTCCCGGGGAGCTGACGGAGGACGAGGGCGCCACacaacaacaacaacaacaacaacaacaacaacGCCTGATCCCTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-