Gene detail

Detailed information of HS04473 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04473	NEURON-DERIVED NEUROTROPHIC FACTOR	chr5	27062888	27070450	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04473

gaaggagagaagagaggaagaggagaacaagtggagaagaggagagaaagaaggggaggagaagaggagaagaggagaagaggagaagagACACCCGCCGGTTCACCTCCTGAGAGGTAAGACGCGTTCAGGAGCTGCTGGTTTAGTGCACGTtaaatcatacgcgttgtttgtttgtttgtttgtttgtttgttGATGTGCGCGAGGCTCCGCGGCAGAGGAACCGGACGGttatttctttctttctttctttGCGGTCTGAAGTCTCTTAAAGGAGCTCGTGAGTTTTGAATCTTCATCTTTTTGTTGACATGTCGCATTAGAGCTCAACTGTTGATGCCGCGTGCACGAGCGCGCTGCAAAGAGCGTGAAAacacacacacacacacacacCTGTAACAGCTGCACGCGCACACTTCATCATGACGTTTTTATTGTGATATTTTGTCACATAATTTATTTTATTTTATAAAAACTTTAATACTTCAACTAAATACTCTCGTTGGGAGTTtcctcctcctcttcttcctcctcctcttcctcctcttcctcctcctccGGTGCCGGTCGGTGTGTAATGACAGACCGGGtCCCGGTGCTCCGCGGCGGGCTGAAGCCGCACTGCCTCCCTCCTCCTGTCCGGAGAATGAATgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaGCGTGCGCGTGCACACCGGAACTAAATCACATTTACATATGAAAAACTCAGTGAAAGAATTCCTCCAGACTCTCATTGCTCAGGCTGTGTGTGTGTGTGCtcctcatgccccccccccctccctgtgttgggttgatcctcatgcccccccccctccctgtgttgggttgatcctcatgccccctgcccGAGCGCGACATAACGGGACAGTGATTGACTCGTTTCCCCTGTGAGCCCCGGATGATGATGAGGAATagggagtgtgtgagggagggagagagagagagggagggagagagagagagggagggagagggagagagagggagggagagagagggaggTTTGCATGCTGCTCCTCCCAACATGTAAATCCTCCAGGTGGAGGACGAGTCTCTCCTCCTCCAATCAGGATATTGATCAGTTGGTTGAGTCTCTGGACGACGGCCTGAACGCCTCTCTGTCATTGGCTgtcacgaccccaaggtcagagcgaggtcacgaccccaaggtcagagcgaggtcacgaccccaaggtcagagcgaggtcacgGGGAGAGGACCCCAAACCATGAGCATCAACGCAGCTGCTCTGAGACACCGGATCGGTTCCAGCTGCAGCTGACTTTAAGTTGAGTGgttgttgttgttgttgttgttgttgttTtgacaccaccaccaccgagcccacatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgcgtgtgcacctctccgtagcgaGGCGCGGTCACGTGACCGTCACGTCACAGAAACCCTGTTGACGTGTTTAGAGAGTTAACAACAGTTGTTGATGTTTAGCTGCTTCACAAACAGGAAGCGATCATGTGACTTCATGTTCTCCAGGAAGTTGGACCTTTCTGTTTATaACATTTAATATGAGCTCCTCTTGTCTAAAGGTAATGAAGTCGTCATGAGATGTGAGTCTCCTGACGACGACACCTCctctccctctctctctctctctctccctccctctctctctccctccctctctctctctctctctctctctctctctccctccctctctctctctctcctctctctctctctctctctctctctctccctccctctctctccctctctccctatcgctctctctctcttcctctccctctctctctctctctctctctctctctctccctctctctctctctctccctctctctctctctctctctctctctctctgggttgtcggggTCGGGGGATCGATACCCGGCTCCAGAGACTTGACCTTCAGAGTCGTGACCTTGGGAGGCCGGGACACCGGAGACGAGGACTGGAGCTTAAAGTGCTTCTCTCTGAAGATCTACAACACAGAACCGACGCCATGTTTGTAGTCCAGAGTCCTCTCGACGGCCTCCGTTCGGGGAGGAAGTGAAACGAGGAGAGAGGAGACAAGATGAGGAGTTAAAGCGTGAAAGAGATTATCTGTTGATGAACAAGAGGAAGAGACAAGGGAGGGGGGCAGCTGAAGAAatggagatgtgggatgggggtgggggggggagggggggtgaaggTCGTTAAAAGGACACCGTCCCGCTCGCGGTAAGCGGCGGTAAAGCATCCGGCTAATCCGCCATCATTACGCTGATTAAACCACCGGAGAGGCGGAGTTCccatcagccaatcaatgtagtcacagccagaagactcactgcagaccactttatatatatacatatatatatatatgaatacatatatatatatatatgaatacatatatataactttatatatgtttccatatctatatgaagacatatatagatgtatacatatatatatatacatatatataactatatatatattgatatatatgtatatatataaagttatatataaagttatatatatatataaagttatatataaagttatatatatatataaagttatatataaagttatatatatataaagttatatataaagttatatttatatatatctatataaggttaaatatatataaagttatatatatatatataactatataactgtatatatatatatatatatatcaaactttatatatatttatataactacatatataaatatatataaagttactcaaaTCCACGTCGTAAAGCTTGATGAAGCCGTGTGGTTTCCTGAGTTTCCAGCAATGTCTTTTCCTTCACACGCCCCATTCCTCTCTGTGGTCAGccccccccctccctccccctccctccccctccccccATGTCACTAAAGATGGCGTTGTGCCATTTTAAAATGTTAATTAAGGTTGAAACTAAAAAAAGGCAAAAAAATGTAAGATATAATTTAGAAATCTATGTAGCGGCAACCAATTAAAGCAGAAAACCGAGAGACGCCGTGAAGTCGTCTGCCAGAAGGAGCTGAAGCCGAAGGAAAGAAAGACATTCACAAGTTCCCTCGTAGACGTCGTGAACACATGATATGAGCCACAAATATCGATTATTATGAGCAGGAAAGAGACAGTCGGGCGTTTTGAGAACTCTCGTCGGGTTATTTGAGAAGGCCGATAAGCGCTCCGGTGCCTGGATGCTAAATATGAGCTCATCTTAGCATAGCATAAAGAGATAACAGTTATGTCTGGTTTTACTGTGAAGGGGAAGTTTGACCTTCTGGGTTAAATCATTATTTTATGGTCTTGCAGATGTCACTCTGATATGAAGACGGGTgttgattagcttagcttagcataaagactggaagcagagggaaacagctagcctggctacgtccacagAAAGCAACATTTTATTTTTTAAaTTATGTGACATGTTTGActcatttgtgtctttgttttctggagtcagatgaaaagacagataccacgctcacatgaagccagtgacagatgtggattagcttagcttagcataaaggaagcagggggaaGATTAAAAAAACCAAACACTCAGCAGTCTTACTGTATGTTTGGTTTTACTGGATGTCTTGGAGTTGGATGAGGAGATTAAAACCACTCTAACATATGTATGTATGAATATTAGCTTATTAGCATAGCGTAAAGACTTGATCATCCTGATCCGGGGCGAGCTACAAACCTGAGACTAGAACGTTCTACAAGCAGGGAACATCAAACGAACAGGATGAAGACAGAATACTGGCATTTCATTGGTTGATACAATTTGCTGTTTGGTGCCCTGCCTGCTTGAGATTAAATCTCCCATTGGGAATTATTCCTGCAAGTTAAATAAATACATTAAAAcaaacagagacgtgctagctgtttccaggctaatgctaagctaagctagtcatcggctgccggtagtttcacgtcgacggcacatgatgggtatccatcttctcgtctcgctctcagcaggaaaactaaggagctcatttcccTTTAAAACATAACTGTGATGCAACAATGAAACTGAAGCGTCGTGTTTCCCGTGTCTTTCAGAATGAGGCAGTGTGAAGCGCGGCGCGCGGCgctgccgttgctgctgctgctgctgGGTCTGGGAGCCGCGGCCCAGAAGCTGCCCACGAGAGACGAAGGGCTCTTCCAGATGCAGATCCGAGACAAGTCGCTGTTCCACGACTCCTCCGTCATCCCGGACGGCGCCGAGATCAGCAGCTACCTGTTCAGGGACACGCCCAAAAGGTGAGCGCATGGATAAAGACTCTCGACGtGCCACACCCATCATCACCCGGGGCCGCATTGAaGCTGCAGACGGCCACTGACTGTAAATAGACATAGGAAACTTCAGACGTGGCTCGTGGTCATGATCTATAATGCAGATGCAAAAAAAGCTAAATAATAAATGAGAAAGTGGTGTTGGTGTAATCGAGTCGTGCTCGAGCCTCCACCCCCCCCCACATTATTCTGGATGGAACGTCCCGAGATGTTAACGGTCCCTTTCCAACCCCGTCATTTCCCCAGGTACTACTTTGTGGTGGAGGAAGACAACACCCCGCTGTCGGTGACCGTGACGCCCTGCGACGCTCCTCTGGAGTGGAAGCTCACCCTGCAGGAGCTGCCGGAGGAGGCCAGCGGAGAGGCCTCAGGTACGGGGACGCGAGGGGTTAATGACGCGGTGATGGTAGGCTCGGTGCCTCGGCGGGGTTTAATTAAGTCACAGTCGTGGTGTCTAGTCTGAACACTTACGATGTCTGACTCCCAAACCGGCGGCTATAATTTGAGAGAAGACGTCCTTTACTTAACGCGTCTCCTCCAGGTGAAGCCTGTCTTCCTCTTTTCTGTTTCTCTCTTCTCCCTCGCTTTAAAACACTTTCTCCATCTGGAGGGGCGTGGCCTTCAACGCAGCAGAGCTCTCCAGGCGACCAGGAGGGGGTTCGGGTGGATGTGTGACGTGAGCGTACATTTGAATGTTAAACACACCAGCACCTGCGTTTGTGGCCGCGGGTCAAATATTACGACATTATTTATTAGGTTGTTATTCTGTTAAAGACGTGGACAGAATTTGTCTTCAAGTAAAAGAATAAAAGCAAATGTGAaccaggtgatgaagtcattctggttgtatagaagtctgtgcttcatgtgttaaagctgcattctctctcctgaccaccaggggggactcctctggttgtatagaagtctctgcttcatgtgttaaagctgcattctctctcctgaccaccagggggagactcctctggttgtgtagaagtctatgcttcatgtgttaaagttgcattctctctcttgaccaccagggggctcctctggttgtatagaagtatatatagtgactctacttctcttgatgtattccctcagtaaacattgtaaacatgagtttatgtctcagtctctagtttctagtcttcttctatacagcatgatgtcatcatttatacattatggtcatttagagtcaaacagaccgtgaagcagggggcgctttaggggcggggctacaggagtttgacatgttgacaccaaggcgttgtccattcttgtccgtgtctttaacttttccacaaagtgttttcatgaatgtttattgtaaACCGCTCGGGTCAAAAACAAGATGGCGGCAAACCAAGAAGAGACTTCACGGTGATCGGGTCCAAGTCTCTGAATTGGACCCGATCCGCGCCCTCGGAGTGTTGGAGCAACGCGGCTCTGTTTGTGCAGGATGTCTCCGGTGGGAGTCGAACCCGAGCGTTAACGTAGCGCTCCGTGTTATGCTTGGCCGGAGCTACAAGGCGCCTCTTTGTGGCGCCGCGTCCCGGGAACGGCCGAGTGAATGCCGGTCTGTGATCTTTTTGgGGATGTTTGGAGTGAAAACATGGCCGCCCCCACGAGGCGCTAATCGCCCGCGCGAGAGCTTCAACATATCAAACCCGCTGAGCCCAAAAAAGTAAACAAAATATTGACTACAGTTTTTTTTTTTTAACGATTATTTTTGTTTTCCAGGAGAGCCGGAGCCTCTGGACCAGCAGAAGCAGCAGGTGACGGTGGACGAGGGCGCGGAGCTCTTCACCTACAAGGGCAACGACGTGGAGGCGTACCTGGCCAGCAGCACGCCGGCCGGCCTCTACCAGCTGGAGCTGCTGTCCACGGAGAAAGACAGCAACTTCAAGGTGTACGCCAGCACCACCCCGGAGTCCGACCAGCCCTACCCGGAGCTGCCCTACGACCCCCGCGTGGACGTGACCGCGCTGGGCCGCACCACCGTCACCCTGGCCTGGAAGCCGACaCCCACGGGCTTCCTGATGGGCCAGCCCATCCGCTACTGCGTGGTGATCAACAAGGAGCACAACTTCAAGAGCATGTGCGCCGCCGAAGCCAAGATGAGCGTGGACGACGCCTTCATGATGGCGCCGAAGCCCGGCAGAGACTTCAGCCCGTTTGACTTTGCCCACTTCGGCTTCGTGCCCTCCGACAACGTGTTCTCCAAAGACCGCGGCCTCACCAGCAACAAGATCTCCCGGGCATACGCGGCCAAGCCCCGAGCGGCGGACATCCAGCGGCTaTGCATCGGCAACAAGAACATCTTCACCGTGTCGGCCCTGAAGCCGGACACGCAGTACTACTTCGACGTGTTCGCGGTCAACGCGGCGACCAACACCAGCACGGCGTACGTGGGCACCTTCGCCCGCACCAAGGAGGAAGCCCGGCAGAAGACGGTGGAGCTGAAGGACGGCAAAGTGTCGGACGTCTTCATCAAGAGGAAGGGCAGCAAGTTCCTCCGCTTCGCCCCGGTGTCCTCCCACCAGAGGGTCACCCTGTTCCTGCACACCTGCCTGGACGCCGTGCAGGTGCAGGTGCGGCGCGACGGCAAGCTGCTGCTCTCCCAGAACGTGGAGGGCGTGCGGCAGCTGCAGCTGCGCGGGAAGCCCAAAGCCAAGTACCTGATCCGGCTGCGCGGCAGCAGGAAGGGCGCCTCCACCCTGAAGGTGCTGGCCACCACCCGGCCCGGCGGCAAGCAGCCGTTCCCCTCGCTGCCGGACGACACGCGCATCAAGGCCTTCGACAAGCTGCGCACCTGCTCCTCCGCCACCGTGGCCTGGCTGGGCACGCAGGACCGCAACAAGTACTGCATCTACCGCAAGGAGGTGGCCGAGAACTACGGCGAGGAGCAGCGGCGCCGGGAGCAGAACCAGTGCGCCGGGCCCGAGGCCCGCAGGAAGTCGGAgAAGGTCCTGTGCAAGTACTTCCACAGCCCCAACCTGCAGAAGGCGGTGACCACGGAGACCGTCTCGGGCCTGGAGGCGGGGAAGACCTACCTGCTGGACGTTTACGTGGTGGGCCACGGCGGCCACTCGGTGAAGTACCAGAGCAAACTGGTGAAGACAAGGAAGTACTGCgaaggagagaagagaggaagaggagaacaagtggagaagaggagagaaagaaggggaggagaagaggagaagaggagaagaggagaagagACACCCGCCGGTTCACCTCCTGAGAGAATGAGGCAGTGTGAAGCGCGGCGCGCGGCgctgccgttgctgctgctgctgctgGGTCTGGGAGCCGCGGCCCAGAAGCTGCCCACGAGAGACGAAGGGCTCTTCCAGATGCAGATCCGAGACAAGTCGCTGTTCCACGACTCCTCCGTCATCCCGGACGGCGCCGAGATCAGCAGCTACCTGTTCAGGGACACGCCCAAAAGGTACTACTTTGTGGTGGAGGAAGACAACACCCCGCTGTCGGTGACCGTGACGCCCTGCGACGCTCCTCTGGAGTGGAAGCTCACCCTGCAGGAGCTGCCGGAGGAGGCCAGCGGAGAGGCCTCAGGAGAGCCGGAGCCTCTGGACCAGCAGAAGCAGCAGGTGACGGTGGACGAGGGCGCGGAGCTCTTCACCTACAAGGGCAACGACGTGGAGGCGTACCTGGCCAGCAGCACGCCGGCCGGCCTCTACCAGCTGGAGCTGCTGTCCACGGAGAAAGACAGCAACTTCAAGGTGTACGCCAGCACCACCCCGGAGTCCGACCAGCCCTACCCGGAGCTGCCCTACGACCCCCGCGTGGACGTGACCGCGCTGGGCCGCACCACCGTCACCCTGGCCTGGAAGCCGACaCCCACGGGCTTCCTGATGGGCCAGCCCATCCGCTACTGCGTGGTGATCAACAAGGAGCACAACTTCAAGAGCATGTGCGCCGCCGAAGCCAAGATGAGCGTGGACGACGCCTTCATGATGGCGCCGAAGCCCGGCAGAGACTTCAGCCCGTTTGACTTTGCCCACTTCGGCTTCGTGCCCTCCGACAACGTGTTCTCCAAAGACCGCGGCCTCACCAGCAACAAGATCTCCCGGGCATACGCGGCCAAGCCCCGAGCGGCGGACATCCAGCGGCTaTGCATCGGCAACAAGAACATCTTCACCGTGTCGGCCCTGAAGCCGGACACGCAGTACTACTTCGACGTGTTCGCGGTCAACGCGGCGACCAACACCAGCACGGCGTACGTGGGCACCTTCGCCCGCACCAAGGAGGAAGCCCGGCAGAAGACGGTGGAGCTGAAGGACGGCAAAGTGTCGGACGTCTTCATCAAGAGGAAGGGCAGCAAGTTCCTCCGCTTCGCCCCGGTGTCCTCCCACCAGAGGGTCACCCTGTTCCTGCACACCTGCCTGGACGCCGTGCAGGTGCAGGTGCGGCGCGACGGCAAGCTGCTGCTCTCCCAGAACGTGGAGGGCGTGCGGCAGCTGCAGCTGCGCGGGAAGCCCAAAGCCAAGTACCTGATCCGGCTGCGCGGCAGCAGGAAGGGCGCCTCCACCCTGAAGGTGCTGGCCACCACCCGGCCCGGCGGCAAGCAGCCGTTCCCCTCGCTGCCGGACGACACGCGCATCAAGGCCTTCGACAAGCTGCGCACCTGCTCCTCCGCCACCGTGGCCTGGCTGGGCACGCAGGACCGCAACAAGTACTGCATCTACCGCAAGGAGGTGGCCGAGAACTACGGCGAGGAGCAGCGGCGCCGGGAGCAGAACCAGTGCGCCGGGCCCGAGGCCCGCAGGAAGTCGGAgAAGGTCCTGTGCAAGTACTTCCACAGCCCCAACCTGCAGAAGGCGGTGACCACGGAGACCGTCTCGGGCCTGGAGGCGGGGAAGACCTACCTGCTGGACGTTTACGTGGTGGGCCACGGCGGCCACTCGGTGAAGTACCAGAGCAAACTGGTGAAGACAAGGAAGTACTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10179	NDNF	Neuron-derived neurotrophic factor, first Fn(III) domain	Domain	Interproscan
PF19433	NDNF_C	Neuron-derived Neurotrophic Factor C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR019326	Family	Protein NDNF	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR045805	Domain	Protein NDNF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14619	NEURON-DERIVED NEUROTROPHIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0019800	Biological Process	obsolete peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-