Gene detail

Detailed information of HS04467 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04467	UNCHARACTERIZED	chr5	26894439	26900968	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS04467

ATGGCTCCCTTTCCGGACGAGGTGGATGTGTTTACTGGCCCGCACTGGCGGATGAAGCAGCTGGTGGGCCTCTACTGCGAGAAGCTTTCCAAAACCAACTTCTCCAACCACAGCGACTTCCGCTCGTTCCTCCAGTCGCTTTGCGCCACCTTCAAGGAGTTCAAGATGCACGAGCGCATCGAGAACGAGTGCATCATCGGGCTGCTGCAGCAGCGCTGCTGCACGGTGTACAACGTGCACTCGGACAACAAGCTGTCGGAGATGCTGTCCCTCTTCGAAAAGGGGCTGCACAACGTCAAGAGCGAATACGAGCAGCTGAACTACGCCCGGCAGCTGAAGGAGCGCCTGGAAGCCTTCACCCAGGACTTCCTGCCCCACATGAAGGAGGAGGAGGAGGTGTTCCAGCCCATGCTGATGCAGTACTTCtCCTACGAGGAGCTGAAGGACATCAAGAAGCAGGTGGTGgcgcagcacagcagccagcagcaccgcgccgccgcgcagctgcTCAAAGGCCTCAGCCTGTGGAGCCAAGCGGAGGAGCTGCACAAGGCCCTCAAGTACGCCGACCACGAGAAGACGCACGACGACCCGGAGCAGCTCTCGGATTCCTCGGCTCACATCTCTGATCTGCCGACGGAGCTCCTGCTGCGGCTGCTCCGCTACCTGGGCCCGGAGGACCTGTGCCGCTGCAGCCAGGTGTGCAGCTCCTGGCTGGACCTGACCCGGACCGGCTCCCTGTGGAGGCACCTGTACCCCGTCCGCTGGGCCAGAGGCGACTACTACAGCGGGCCCCCAGgggaccgggaccaggagccgggcgaggagtgggtccggagccggcagaacgagggccgggcctaccaggagtgggacgaggacGCCGACGTGGACGAGTCGGACGAGTCGGGCGGCGCCCGCGGCTCGCCGGCCATCGACACCGCCCAGCGGGAGAAGAGGCTCCTGAACGGGCTGCTCCAGAACCTGCTGCCGGCCGTGGGCCCGGCCGTCAGGTCCATGGTTCTGGCCTACAGCTCCACGGTGTCCAGTAAAATGGTGCGCCAAATCCTCAGTTTCTGCCCCAACATCAGACACCTGGACCTGACCCAGACGGACGTGACGGATTGTGCATTCGACAGCTGGGCGGCGCTGGGCGGCTGCCTCTCCCTGGAGCATCTGGACCTGTCGGGCTGCGAGAAGCTGACGGACCACAGCGCCATGAAGCTGTCtGTCGGCCTCGGCGACCTCGCGTCCTCCGGCGGCGCCGACCGGCGCTCGGCCCAACGGGCCAAGCTGCTCCAGAGCTCCCCGGTCCCCATCGCGCTCACGGAGGCCCGGAAGAACCCGGCGGCGGGGCGACAGCGCCGGGCGCTCGTCTTCAAGCCTCCGGGGGCCCCGACGCGGGTCTGGGTCCTGGACCTCGCCGACATCGAGGACGCGGCGGACTGGAGCCGCGGCGGCGCCGAGAGCTTCGCGGAGACGCAGCCGGCGGGCGGCGCCTGCTGCTGCAGGAGGCCCGGCGGCGAGCAGCGGACCGGCGCCGGCTTCTTGCAGTACGCCGGCGTGGCGGCaGAGTCACTGTGCGGACACTCCGCCTGCTGCGCAGCCGACGTGGCCCTCAGGACTTTCGCCGGGCCGCCGGGCGACTCGGGCGCCACGGGGCTTCGGACTGAGCGCTCCTCTTTTGAGGGCCGGCGCTGCCCGGAGCGCGAGGACCGGGCGGCGCCGACGACCACGGCCACGCGCTCGCTGAGGTTCCTCAGTCTCTCCGGATGCTACCAAGTCACAGACCTGGGCCTGAGggctctgtctcagcgcggaggtCTTCCTCACCTGGAGCACCTCAACCTGTCCGGCTGCCTCTTCATCACCGCCGTGGGCCTGAGGGAGCTGGTGTCTGTCTGCCCTGCGCTCAATGACGAGCACTTCTACTACTGCGACAACATCAGCGGTAACCACGGAAACTGTAGCGCTGCCTGGTGGTTATATAGATGTagtctccccctggtggtcagtagagagaatgcagttttgaTTTTGTGTTGTTTTTGTAAAACGTCCCTACCTGCCGTCTCAGGTGCTCCTGAGGTGAAGGTAAGTCGGCGTTACAGAAGCTGGTACGATGCTGTCAGTATTTACTATCTTTCATTTGTGTATTTTAAATGTAATGATTTATTTATTACTAGCATTGTTCATGTGTCCCGTAGCTTG

Transcript

HS04467

ATGGCTCCCTTTCCGGACGAGGTGGATGTGTTTACTGGCCCGCACTGGCGGATGAAGCAGCTGGTGGGCCTCTACTGCGAGAAGGTGTGTACGGACGAGCGCTCGCGCGTGAGTGTGGAGTTAAAAACAAACAACAGACACGCGTTCGTCGAGTCTCGTGACTCTTGTATCGGCTCTGCGAAGCTAACGCTCGCTAGCTGTTGTCAGCTAGCTTgGCTGTGTCCAGGAGGTGTTATGCAACGTGCTTTACGTGTCACCGCGTTCACAATGTGACTCAAAACGAGGCTTTACCCGCTGCTTGTGAAATAATAAACATACAAATCCATTGTGAGCAGGACACCGAGTTAGTGACACGAGCTAGCGTCGTCAACGCGGACGATGCTCCCGTTACGTGTGGAGACTGGTCACCTGTTGTGTTATGGATCTGTTTTATATCTTATTGttattatggatctgttttatatcttattatggatctgttttatatcttattatggatctgttttatatcttattatggctctgttttatatcttattatggatctattttatatctgattaATGTTATTATGGATCTGTtttataataataataataatgcatttcatttttatcgcactcttccttcaaagaatctcagtgccacacatatagtaaaaacaaataaaaccgattaaaacatagttaaagcaacccataaaaagaaaaaaaatcagaatgtaatagctgacaataaattaactcaaggtaaaagaaatgccttcctgaataaaaaggtttttaggccagtcttaaaagagttcagtgtctgagttgccctcaggtggtcagggagaccgttccacaagcgtggcgctgccgagcaaaaggcccggtcgcccatggtgcggagctcggtgtcggggacccgaaggagcgagcggcctgtggatctgagggtgcgggtggaggttaggggagtgatacgttcttgtaggtaggggggtgcatgtccgttgatgcatttatatgtgagtactaggaccttgtagttatatctgattaatgttattatggatctgttttatatctgattaatgttattatggatctgttttatatctgattaatgttattatggatctgttttagatcttattaTGGCTCTGTTTTTATATTTTATGTTAGTTTTAAATGCATAAACTTTCatatctatcaatatacatcctacacactgtatacacacaatataactatatatatatatatataaacatctgaaatataaccatacagttccgtgtttatttctacattcctatagtttgcacttgacttgtattttatgtttttgttatatatattttattgtgggtcatatatatattttaaaggttatatatatataaatatattatatatattttttattaaataaatattacatatttatttatatattatatatatctatattttaattcatttgttttatatatatatatatatGTGTGTGTTCATATGTGTCCTCAATACTCCGTTCCCTTTGTTTGTTCAGCTTTCCTGTATTTCTAGTTCTGTGTACATTGAGATCAATATTAAAGAGTCAAATTCCTTGTGCATGTGTGTGTGTGTGtACGTCAATACCACGGATATCTGATTTCCTCTGTTAAATGTCCTCGGTATGAATACGAGTGACGTTATGAACGAGTCGTTCTTTGTTGTTTTTCCTCCAGCTTTCCAAAACCAACTTCTCCAACCACAGCGACTTCCGCTCGTTCCTCCAGTCGCTTTGCGCCACCTTCAAGGAGTTCAAGATGCACGAGCGCATCGAGAACGAGTGCATCATCGGGCTGCTGCAGCAGCGCTGCTGCACGGTGTACAACGTGCACTCGGACAACAAGCTGTCGGAGATGCTGTCCCTCTTCGAAAAGGGGCTGCACAACGTCAAGGTAAATGTTAGacatgtaaatacacactaccgttcagtttggggtcacttagaaatgtccttctttaaagcactgtttcatcaatgaagataacatttaattaataaacactttctctccatagttaatgtgtagatgactattctctggtgttaatgaagtctctacagaggtgtgtagaggcccatctccagtggtctagtggtacattgtgttatcgccttagaagactagcggaggggtagaaaacccttaaaacccctttttatgtgagcgcagctgaaaacagttatgctgctgagagaagctataaaactggccttcctttgagccacaagaagaacaacattaatatttactataaaaatcctcatttgtaacctcgtcgatgtcttgactagattttatttttattttggaatttatttgataaataaaagtgagttttcatggaaaacactaaatagtctgggtgacgccaaactttagaccagtcgtgtgtatttatagtttattgtatttatatttaattgtatttacagtttgttttatttatagtttgttgtatttataacctgttgtatttatatttaattgtatttacagtttgttgtatttatagtttattgtatttatagtttgttgtatttatagttgtatttatagtttgttgtatttatagttgtatttatagtttgtGCTGCGTCTAGACTTGAGGGGTCAACATGCTCGTGTTCTGCAGAGCTCAGCTGATGTGTGACTGTCATTAGAGTAAATATCATGTTGGACACACGGACTGCAGCAACAACAACAACACGTTGTTGTTCAGACCTACAAGTTTAACGTCATCTGTATCTTTAATTTATTTTAAAGCCGTTTAGCAAATATAAAAACAGTCAAAACAAAGTTTTTGTCGCTCTTGTAAACTTTATTTGAAAGCCGGCTGCATCGGAGGCTGACCGCTGTGACTCATCTTCCTCTTCATCGCTTCTGCAACAGAATAACTCAGTCGCTCCGTTCTGTGGCGATGCCCTCGTGTTGACTCAGAGGTTCTGGGTGTCCCTGACGGTGTGTTTCCCTCAGAGCGAATACGAGCAGCTGAACTACGCCCGGCAGCTGAAGGAGCGCCTGGAAGCCTTCACCCAGGACTTCCTGCCCCACATGAAGGAGGAGGAGGAGGTACGCGTGTCTTTCCGTCCCTCGCCCCTCGAGGAGGCGTGTCTAACCGGGCCCGTTGCAGGTGTTCCAGCCCATGCTGATGCAGTACTTCtCCTACGAGGAGCTGAAGGACATCAAGAAGCAGGTGGTGgcgcagcacagcagccagcagcaccgcgccgccgcgcagctgcTCAAAGGCCTCAGCCTGTGGAGCCAAGCGGAGGAGCTGCACAAGGCCCTCAAGTACGCCGACCACGAGAAGACGCACGACGGTGAGCAGGAGGAGGAGGAGTCATGGATACGGACCTCCTTCAAGGGGAGAGGCTGAAGATTTAGAACACAGAAAGTTCAATTATATCAAACATAAAAGCATCAAAAGATTCAATACCAGGATCAAACTTAAGGTGGCAGCGTGTGGAAGACGGGTTACTGCCGtctacgctcttcttcttctacgctcttcttctacgctcttctactacgctcttcttctacgctcttctacgctcttcttcttctacgctgttcttcttctacactcttcttcttctacgctgttcttctacactcttcttcttctacactcttcttcttctTCTACGCTCTTCTAGACTCTTCTTCTACGCTTTTTTTATTCTCTGTTCTTATTTTCATTGTCAGAGTATTTGGTTTATTTCGGGTTCCCTTGTATCCTGTAAGCAGTTGACTCACCATACAGAAtcctcttcctcctcctcctcctcctcttccctctcctcctcctcctcctcttccttctcctcctcctcctcttccctctcctcctcctcctcccttcAGACCCGGAGCAGCTCTCGGATTCCTCGGCTCACATCTCTGATCTGCCGACGGAGCTCCTGCTGCGGCTGCTCCGCTACCTGGGCCCGGAGGACCTGTGCCGCTGCAGCCAGGTGTGCAGCTCCTGGCTGGACCTGACCCGGACCGGCTCCCTGTGGAGGCACCTGTACCCCGTCCGCTGGGCCAGAGGTAGACCCCCCCATCAGAACCAGAACCACGTGCATCCACTCAAAGTGTCcGTAAACCTTGGCGTCCCTCTCGCTAGGCGACTACTACAGCGGGCCCCCAGgggaccgggaccaggagccgggcgaggagtgggtccggagccggcagaacgagggccgggcctaccaggagtgggacgaggacGCCGACGTGGACGAGTCGGGTgaggaggaggaggaggaggaggaggaggTCACGTGTGGCTCCTCGTgCAGTTTAACGTGCAGCCGGTCCGAAGGGTTCATTGGTCGGATGTTTAGAGTCCAGAAGAACCCGTTCcGGGTTTATGAAGACCTGCAGAACTTCTGTGGAACGCCTCGACGTGTTCTGGAGAAATAATAATTATAACTTAATTAATTTGCTTAAAACAAAAAGAATCCGATCCAGATGTCAGGAGTCTGGTGGCGTCATCGCCTCTGAGGAACGGAACCAGAACCGTTCTAGTCCCTTGAAGCTGGTTCTGATCGATATCCGTGTCCCTCCAGACGAGTCGGGCGGCGCCCGCGGCTCGCCGGCCATCGACACCGCCCAGCGGGAGAAGAGGCTCCTGAACGGGCTGCTCCAGAACCTGCTGCCGGCCGTGGGCCCGGCCGTCAGGTCCATGGTTCTGGCCTACAGCTCCACGGTGTCCAGTAAAATGGTGACGCGGCGCCGCCTCGCTTCTTTTGGACTGAGGAGGAGACCGGGCCTGACCTGTTGTTGTTGTTGTTTTCAGGTGCGCCAAATCCTCAGTTTCTGCCCCAACATCAGACACCTGGACCTGACCCAGACGGACGTGACGGATTGTGCATTCGACAGGTGAATATCAGCCCGGTCCGTTCCATCAGTACCACCTGCCCCCCCCTCACCACCTCCCCCCCCCAGCTGGGCGGCGCTGGGCGGCTGCCTCTCCCTGGAGCATCTGGACCTGTCGGGCTGCGAGAAGCTGACGGACCACAGCGCCATGAAGCTGTCtGTCGGCCTCGGCGACCTCGCGTCCTCCGGCGGCGCCGACCGGCGCTCGGCCCAACGGGCCAAGCTGCTCCAGAGCTCCCCGGTCCCCATCGCGCTCACGGAGGCCCGGAAGAACCCGGCGGCGGGGCGACAGCGCCGGGCGCTCGTCTTCAAGCCTCCGGGGGCCCCGACGCGGGTCTGGGTCCTGGACCTCGCCGACATCGAGGACGCGGCGGACTGGAGCCGCGGCGGCGCCGAGAGCTTCGCGGAGACGCAGCCGGCGGGCGGCGCCTGCTGCTGCAGGAGGCCCGGCGGCGAGCAGCGGACCGGCGCCGGCTTCTTGCAGTACGCCGGCGTGGCGGCaGAGTCACTGTGCGGACACTCCGCCTGCTGCGCAGCCGACGTGGCCCTCAGGACTTTCGCCGGGCCGCCGGGCGACTCGGGCGCCACGGGGCTTCGGACTGAGCGCTCCTCTTTTGAGGGCCGGCGCTGCCCGGAGCGCGAGGACCGGGCGGCGCCGACGACCACGGCCACGCGCTCGCTGAGGTTCCTCAGTCTCTCCGGATGCTACCAAGTCACAGACCTGGGCCTGAGGTACTGAGTCACCACGCCAGGACCCTCACCTCGTGGCCGGTtctgttgggtcctgaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgtgtgtgtgtgtgtggttgtgtctctgtggttgtgtgtgtgtgtctgtgtgtggttgtgtctctgtgtgttgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtggttgtgtctctgtgtgtgtgtgtgtgttcgtgttccagggctctgtctcagcgcggaggtCTTCCTCACCTGGAGCACCTCAACCTGTCCGGCTGCCTCTTCATCACCGCCGTGGGCCTGAGGGAGCTGGTGTCTGTCTGCCCTGCGCTCAATGACGAGCACTTCTACTACTGCGACAACATCAGCGGTAACCACGGAAACTGTAGCGCTGCCTGGTGGTTATATAGATGTagtctccccctggtggtcagtagagagaatgcagttttgaTTTTGTGTTGTTTTTGTAAAACGTCCCTACCTGCCGTCTCAGGTGCTCCTGAGGTGAAGGTAAGTCGGCGTTACAGAAGCTGGTACGATGCTGTCAGTATTTACTATCTTTCATTTGTGTATTTTAAATGTAATGATTTATTTATTACTAGCATTGTTCATGTGTCCCGTAGCTTGATGGCTCCCTTTCCGGACGAGGTGGATGTGTTTACTGGCCCGCACTGGCGGATGAAGCAGCTGGTGGGCCTCTACTGCGAGAAGCTTTCCAAAACCAACTTCTCCAACCACAGCGACTTCCGCTCGTTCCTCCAGTCGCTTTGCGCCACCTTCAAGGAGTTCAAGATGCACGAGCGCATCGAGAACGAGTGCATCATCGGGCTGCTGCAGCAGCGCTGCTGCACGGTGTACAACGTGCACTCGGACAACAAGCTGTCGGAGATGCTGTCCCTCTTCGAAAAGGGGCTGCACAACGTCAAGAGCGAATACGAGCAGCTGAACTACGCCCGGCAGCTGAAGGAGCGCCTGGAAGCCTTCACCCAGGACTTCCTGCCCCACATGAAGGAGGAGGAGGAGGTGTTCCAGCCCATGCTGATGCAGTACTTCtCCTACGAGGAGCTGAAGGACATCAAGAAGCAGGTGGTGgcgcagcacagcagccagcagcaccgcgccgccgcgcagctgcTCAAAGGCCTCAGCCTGTGGAGCCAAGCGGAGGAGCTGCACAAGGCCCTCAAGTACGCCGACCACGAGAAGACGCACGACGACCCGGAGCAGCTCTCGGATTCCTCGGCTCACATCTCTGATCTGCCGACGGAGCTCCTGCTGCGGCTGCTCCGCTACCTGGGCCCGGAGGACCTGTGCCGCTGCAGCCAGGTGTGCAGCTCCTGGCTGGACCTGACCCGGACCGGCTCCCTGTGGAGGCACCTGTACCCCGTCCGCTGGGCCAGAGGCGACTACTACAGCGGGCCCCCAGgggaccgggaccaggagccgggcgaggagtgggtccggagccggcagaacgagggccgggcctaccaggagtgggacgaggacGCCGACGTGGACGAGTCGGACGAGTCGGGCGGCGCCCGCGGCTCGCCGGCCATCGACACCGCCCAGCGGGAGAAGAGGCTCCTGAACGGGCTGCTCCAGAACCTGCTGCCGGCCGTGGGCCCGGCCGTCAGGTCCATGGTTCTGGCCTACAGCTCCACGGTGTCCAGTAAAATGGTGCGCCAAATCCTCAGTTTCTGCCCCAACATCAGACACCTGGACCTGACCCAGACGGACGTGACGGATTGTGCATTCGACAGCTGGGCGGCGCTGGGCGGCTGCCTCTCCCTGGAGCATCTGGACCTGTCGGGCTGCGAGAAGCTGACGGACCACAGCGCCATGAAGCTGTCtGTCGGCCTCGGCGACCTCGCGTCCTCCGGCGGCGCCGACCGGCGCTCGGCCCAACGGGCCAAGCTGCTCCAGAGCTCCCCGGTCCCCATCGCGCTCACGGAGGCCCGGAAGAACCCGGCGGCGGGGCGACAGCGCCGGGCGCTCGTCTTCAAGCCTCCGGGGGCCCCGACGCGGGTCTGGGTCCTGGACCTCGCCGACATCGAGGACGCGGCGGACTGGAGCCGCGGCGGCGCCGAGAGCTTCGCGGAGACGCAGCCGGCGGGCGGCGCCTGCTGCTGCAGGAGGCCCGGCGGCGAGCAGCGGACCGGCGCCGGCTTCTTGCAGTACGCCGGCGTGGCGGCaGAGTCACTGTGCGGACACTCCGCCTGCTGCGCAGCCGACGTGGCCCTCAGGACTTTCGCCGGGCCGCCGGGCGACTCGGGCGCCACGGGGCTTCGGACTGAGCGCTCCTCTTTTGAGGGCCGGCGCTGCCCGGAGCGCGAGGACCGGGCGGCGCCGACGACCACGGCCACGCGCTCGCTGAGGTTCCTCAGTCTCTCCGGATGCTACCAAGTCACAGACCTGGGCCTGAGggctctgtctcagcgcggaggtCTTCCTCACCTGGAGCACCTCAACCTGTCCGGCTGCCTCTTCATCACCGCCGTGGGCCTGAGGGAGCTGGTGTCTGTCTGCCCTGCGCTCAATGACGAGCACTTCTACTACTGCGACAACATCAGCGGTAACCACGGAAACTGTAGCGCTGCCTGGTGGTTATATAGATGTagtctccccctggtggtcagtagagagaatgcagttttgaTTTTGTGTTGTTTTTGTAAAACGTCCCTACCTGCCGTCTCAGGTGCTCCTGAGGTGAAGGTAAGTCGGCGTTACAGAAGCTGGTACGATGCTGTCAGTATTTACTATCTTTCATTTGTGTATTTTAAATGTAATGATTTATTTATTACTAGCATTGTTCATGTGTCCCGTAGCTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01814	Hemerythrin	Hemerythrin HHE cation binding domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012312	Domain	Hemerythrin-like	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR045808	Domain	FBXL5-like, hemerythrin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006879	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0055072	Biological Process	obsolete iron ion homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-