Gene detail

Detailed information of HS04446 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04446	GS HOMEOBOX 2	chr5	26328647	26329756	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04446

AAGAAAAAGCCCGCAGTGTGTGATTGGAGGCCCGGGGGACGTCACGTGGTGCGGGTCGCTGACAGCGTCAACCCTCCGGAGCGGCGGGTGCGCACTTGGGTGACGCTGCAGGGCCGGCCCCTCTTCGGGGTCCCTTTTGTTGGACCATCAAACATAAGCACCTTTGGAGATCCCGAGGGGGTTCACATGAGAGTCGGCCATCATCTTGAGCTTGGAGAGACACCGATCAGCATGTCGAGGTCTTTCTACGTCGATTCTTTAATCATCAAggactcggtccgaccgggaccgggacccggacccagacccgCGGAGCACCCGGGCCAGGACTTCTTCATCCCCCTCAGCATGCCGGTGTGTCCGTCCCGGAAGACGGGCACCTTCTGCGTCTGCCCGCTGTGCGTCACGTCGCACCTGCACGCGTCCCGTGGCGGCATTCCGGTGCTGAAGAGCCAGTTTCCGGGCGTGGAGGCGCAGTACTGCCACCGGATAGCGCATCACCAGCCACCTGCGCTCGCGCACCCGGGCCACACGTCTGTCTGCGCGCCCACGTTCAGCGTCACGGACCCGAGGAGATACCACTGCCTCTCCATCGGTGAGCCACCTGTTTGATAAGCGGCGCTTTTTACGGGGCTGGAGACGGAGCGCTCGGCTTTTACGCACGAGATTTTACGCGCGGTGTTTGCGCCAATTCTGCATCTGATTTGAGTTGAGAGCTTTTTCTGTTGTAAACTTGCGACTTAACATGTTGTCTTGTTCCTCCCGACAGGCGCCACCGACAGCAGCCACATACAGAACGGCAAGAGGATGCGCACGGCGTTCACGAGCACGCAGCTCCTGGAACTTGAGCGCGAGTTCTCCACGAACATGTACCTCTCCAGACTCCGGAGGATCGAGATCGCCACGTACTTGAGCCTGTCGGAGAAGCAGGTGAAGATCTGGTTCCAGAACCGCCGCGTGAAGCACAAGAAGGAGGGCAAGGCCACCCAGAGGAGCGCGCACAGCAGCGGCTGCAAGTGCACGAGCGGCCTCACGGACTACTCGAGGTCGGAGGACGAGGAGTCTCTGTCTCCGGCCTCCGCGTCGGAGGAGAAGGAGGTGTCCCCCATCAAGAAAAAGCCCGCAGTGTGTGATTGGAGGCCCGGGGGACGTCACGTGGTGCGGGTCGCTGACAGCGTCAACCCTCCGGAGCGGCGGGTGCGCACTTGGGTGACGCTGCAGGGCCGGCCCCTCTTCGGGGTCCCTTTTGTTGGACCATCAAACATAAGCACCTTTGGAGATCCCGAGGGGGTTCACATGAGAGTCGGCCATCATCTTGAGCTTGGAGAGACACCGATCAGCATGTCGAGGTCTTTCTACGTCGATTCTTTAATCATCAAggactcggtccgaccgggaccgggacccggacccagacccgCGGAGCACCCGGGCCAGGACTTCTTCATCCCCCTCAGCATGCCGGTGTGTCCGTCCCGGAAGACGGGCACCTTCTGCGTCTGCCCGCTGTGCGTCACGTCGCACCTGCACGCGTCCCGTGGCGGCATTCCGGTGCTGAAGAGCCAGTTTCCGGGCGTGGAGGCGCAGTACTGCCACCGGATAGCGCATCACCAGCCACCTGCGCTCGCGCACCCGGGCCACACGTCTGTCTGCGCGCCCACGTTCAGCGTCACGGACCCGAGGAGATACCACTGCCTCTCCATCGGCGCCACCGACAGCAGCCACATACAGAACGGCAAGAGGATGCGCACGGCGTTCACGAGCACGCAGCTCCTGGAACTTGAGCGCGAGTTCTCCACGAACATGTACCTCTCCAGACTCCGGAGGATCGAGATCGCCACGTACTTGAGCCTGTCGGAGAAGCAGGTGAAGATCTGGTTCCAGAACCGCCGCGTGAAGCACAAGAAGGAGGGCAAGGCCACCCAGAGGAGCGCGCACAGCAGCGGCTGCAAGTGCACGAGCGGCCTCACGGACTACTCGAGGTCGGAGGACGAGGAGTCTCTGTCTCCGGCCTCCGCGTCGGAGGAGAAGGAGGTGTCCCCCATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR042191	Family	GS homeobox 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47421	GS HOMEOBOX 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-