Gene detail

Detailed information of HS04373 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04373	TUMOR NECROSIS FACTOR FAMILY MEMBER	chr5	25176562	25178480	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04373

ATGAGCGGCGATCAGCAGAGCTACCCGCTCCCTCAGGTGTTCCTGGTGGACGCCGGCGGCCCGCAGCACCCGGACCAGCAGCCGAGCCTCGTGCCCTGCTGGTCCTTCCCGCCGGCCCGGGAGCCGGCGAGGGCCCGCGGGCGGAGCCGGGGCTGCATGGGCGTCGGCGCCGGCCCGGCCCTCGTCGCCCTGATGCTCTTCCTGCTGGTGTTCGCGTGCCTCGGGTTGGGAGCGTACCAGATCCACAACATGCAGGCCGAGCTGAGGGAGACGAGGGAGATGAGGAAGGTGAGGACGTGTGTGAGAGAGATGATGATTATAGATTAGAGTTGGAGAATTCGGTTTCTATTGATTTAATCTGCAACTTCTTTTGGGATCATGATTtgactccagcttcttaaatgtgaaaatgtttttgtttctttactttatttgCGGCCCAAACGAGATTTTACTTCTTGATTTTAATTGAGAAAAGTAATCAAAAGTCCCAAAAAGTTGCTCTACTTTTTCAAAATAAATGTGCAATTGAGTCATTGTGATaAAATAATGTCAATATTAATAAAATTACTCTTACTGGTGCCGTTTTAATGGGGGGAAATGTATCTCACCGAAAACCTGCAAAAAAACCTGCAGAAGTTTGCGAAAGACTTTCTTCTCGCTCTGACATTTAAAATCGCGACCCGGCGGCTCCATCGCGCCGCCTGTGGTCCGGCGACACCGGATTTCCTCCCTCTGCTCTGAGAGGAGGAAGCGAGCGTCTCTGTGATGTGGTGACGAGACTCTTCTCTCGTTTCTCTGAAGGTCGTGTCGACCCCCGACGACGAGAGCCGCGCGCCGCAGAGGCAGATCGGTAAACACAGAAACACTCCAAATGTTCCCgaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagatGGAGATGTGACTCCCGTCTGGTCTGTTTCAGCTCACCAACTCGAGATGAACGAAGGAGACGAAGAGGAACGACCTGCAGCGCACGTCATCGGTGCGACGACCGATACAAATATACAAATAAATGCAACTTACTCTCTGGAACATCcctcacactcctctctcctcttctctctctcctctttcctctctccactctactaccctaccctctcctctctccttcctctctcctctctccttctctcctctcatctctctcctttcctctctctcctctcccctactctgtcatcctctcttctcctctctcctctctcctccctcctctcctttctcctccctcctctccttttctctctcctctccccccgttctcctaccctaccctctcttctctctcctcttctctcctctcctacaacaccctctcctctctcctccctcctttcctctctcctctcctctctcctctctcctcatcgcctccctcctctcctctctcctctctcctcccttctctcctccctcatctcctctctctcAGGGCGCATCGAAACCGACAATGTCCCCCGGACGCTGCGCTGGGATCCGCGGTCGGGCCGGGCGTTCGAGTCGGGCGCCGTGTCGTACCGGGCGGAGGACGGCGGCCTGCAGCCGAACCGGAGCGGGCTCTACCACGTGTACTCGCGGGTGGAGCTGATCTTCAATGACTGCTCGCCGGCCTCCTCCTTCGTGCACTCGGTGTTCGTGAGGCGGGCGGCGGCGGGCGGGGGGCGCCCCCCCTCACCTCTGACCCTGATGGAGGCCCACAGGGCGGGGTTCTGCTCGGCGCAGCGCGGCCACGTCTGGACCGCCGACAGCTACCTGGCCGGCGCCGTGCGGCTGCAGAGGAACGACCGCGTGTTCGTGAACGTGTCGCAGCCCTCGTTCCTCAGCCACTCGCATTACGCCAACTTCTTCGGCCTCTACAAGATCATGAGCGGCGATCAGCAGAGCTACCCGCTCCCTCAGGTGTTCCTGGTGGACGCCGGCGGCCCGCAGCACCCGGACCAGCAGCCGAGCCTCGTGCCCTGCTGGTCCTTCCCGCCGGCCCGGGAGCCGGCGAGGGCCCGCGGGCGGAGCCGGGGCTGCATGGGCGTCGGCGCCGGCCCGGCCCTCGTCGCCCTGATGCTCTTCCTGCTGGTGTTCGCGTGCCTCGGGTTGGGAGCGTACCAGATCCACAACATGCAGGCCGAGCTGAGGGAGACGAGGGAGATGAGGAAGGTCGTGTCGACCCCCGACGACGAGAGCCGCGCGCCGCAGAGGCAGATCGCTCACCAACTCGAGATGAACGAAGGAGACGAAGAGGAACGACCTGCAGCGCACGTCATCGGGCGCATCGAAACCGACAATGTCCCCCGGACGCTGCGCTGGGATCCGCGGTCGGGCCGGGCGTTCGAGTCGGGCGCCGTGTCGTACCGGGCGGAGGACGGCGGCCTGCAGCCGAACCGGAGCGGGCTCTACCACGTGTACTCGCGGGTGGAGCTGATCTTCAATGACTGCTCGCCGGCCTCCTCCTTCGTGCACTCGGTGTTCGTGAGGCGGGCGGCGGCGGGCGGGGGGCGCCCCCCCTCACCTCTGACCCTGATGGAGGCCCACAGGGCGGGGTTCTGCTCGGCGCAGCGCGGCCACGTCTGGACCGCCGACAGCTACCTGGCCGGCGCCGTGCGGCTGCAGAGGAACGACCGCGTGTTCGTGAACGTGTCGCAGCCCTCGTTCCTCAGCCACTCGCATTACGCCAACTTCTTCGGCCTCTACAAGATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006052	Domain	Tumour necrosis factor domain	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11471	TUMOR NECROSIS FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0008625	Biological Process	extrinsic apoptotic signaling pathway via death domain receptors	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-