Gene detail

Detailed information of HS04337 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04337	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	chr5	24660784	24663151	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04337

ATGGATGACGAAGAGGAAACATACCGGCTGTGGAAGATTCGTAAAACCATCATGCAGGTACCTTATTTCTTAATGTTGGTTTTGTTTAGCCGGCTAAGCCTAGCATGTACGTTAGCTTAGCCAAAGCAATGTTGAGAATCAGGGGTTTTGTTGATTCTGCCGCCAGTATAAAGTAGTTTATGAGATGTGGATTAACAAaCTGTTTTATTCTCGCTGTTAATTGTGTCAGCAGTTTGTCGTcAGTGCCTCTTGCTTTGCAGCATAAGCGTTTCAAGAAGCACGATCGTTAACATGCtCGGAATAGACATGAACAGAATGCTGCCCTTTTTGCATTTTCACAAGCAGAATTATGGTTTCGCGAATCCTAAAGGGTCTCTGCCTTCTCCGGGATAAAGGAGTGTATCGTTAACAGCTCTAgTTCTACTGTATGTTTATGTGGACCTGGTCCAATGTGGTCTAGGTGTGTCACGAGCTGTGAAATATCACCCCATTTAAATATTTTCACAAAaGaAACAAAGACATTTGAAAGTGGGTTACAGGCAGGACATCATGGAAACCTCTGCATTGCCTTCCTTTTGCTATTCGAGGTGGTTTACATACCGGTCGTGAGGATCTTGGAGTCCGTTCCAGCTTGACGTTGAAACATGATATTGTATTCTGAACTCTCAACGGTCTCACCTTTACACCCTCAGCTGTGCCACGACAGAGGCTACCTGGTGACCCAGGACGAGTTGGACCAGACGCTGGATGAGTTCAAGAGTCAGTTTGGAGACAAGCCCAGCGAGGGTCGGCCCAGACGCACAGACCTCACTGTGCTGGTGGCTCACAACGACGACCCCACCGACCAGATGTTTGTTTTCTTCCCTGGTGGGTTCATACTTTATATTCTATCATTTTATTAAACCAAAAAATATATTTTTTTTCCTGGGAACACAAGTGAGGCCATTGCATAatctacaggactgtctcagaaaattagaatattgtgataaagttctttattttctgtaatgcaattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactctaaaatcctatctcataaaattttaatatttcctcagaccaagtaaaaaaaaagatttataacagctgagtgtttgtcaaggctcaggaaacccttgcaggtgtttcgagttaattagacaattcaagtgatttgtttaataccctactagtatactttttcatgatattctaatatttagagataggatatttgagttttctaaagctgtaagccataatcagcaataaatcagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgtttttttaattgcattacagaaaataaagaacttcatcacaatattctaattttctgagacagtcctgtatttgagccttacatgtatgtttatacctgtacaTGCGGTGGTGTGCTATTAATACATCTGATTTTTCGTCACTTTTCAGAGGAACCCAAGGTGGGAATCAAGACGATCAAGATGTACTGCCAGAGGATGCAGGAGGAGAACATCACACGAGCCATCATTGTTGTTCAGATGGGCATGACACCGTCAGCCAAACAGGTAaACGCCTCCATCtTATAaCGTGACATTTCGGAGCACCTCTTGTCGTCGTTTAGCTTTCTTTCTCTCGCGTCTCTCACGTAATGACGCGTCTCCTTTCAGTCTCTCGTTGACATGGCACCCAAATACATATTGGAACAGTTTCTACAACAGGAGCTGCTCATCAACATCACGGAGCACGAGGTAACCAACGCGCCGCACTCGGATCCCATTGACGGAGTGAGAATCACGTTTCAGTTTGCGACGCATTGCTTTGTCTTTCAGCTCGTTCCAGAGCACATCGTCATGACGAAAGAGGAAGTTGCTGAACTTCTGGCAAGATAGTATCCTTACAAGCAAGTGCGCTCATTCGAGCAACAATGTTTAGGAATGCAAGACATGCACTTGGTCATCTTTGGAGTACTAACCATTTGTAATAAAGTATAAAATAGCAGCTGATTTACCTGAAGACCACCATCGAGCTGTATTTAGTGTCTAAAAATATGCATCTGTTATCCTCCCGTAACCTTTTTACCTCAGTAAATTAAAGGAAAGTCAGTTGCCGAGGATCCAGGCTGGAGACCCCGTGGCTCGTTACTTTGGCTTGAAAAGAGGACAGGTAAGAAGAAAAAGAATGCAAATAAAATACATGCAACTTGTGTTCCCCGTCAAACTATTTTGTATCTACTTTTCCAGGTGGATGGATGACGAAGAGGAAACATACCGGCTGTGGAAGATTCGTAAAACCATCATGCAGCTGTGCCACGACAGAGGCTACCTGGTGACCCAGGACGAGTTGGACCAGACGCTGGATGAGTTCAAGAGTCAGTTTGGAGACAAGCCCAGCGAGGGTCGGCCCAGACGCACAGACCTCACTGTGCTGGTGGCTCACAACGACGACCCCACCGACCAGATGTTTGTTTTCTTCCCTGAGGAACCCAAGGTGGGAATCAAGACGATCAAGATGTACTGCCAGAGGATGCAGGAGGAGAACATCACACGAGCCATCATTGTTGTTCAGATGGGCATGACACCGTCAGCCAAACAGTCTCTCGTTGACATGGCACCCAAATACATATTGGAACAGTTTCTACAACAGGAGCTGCTCATCAACATCACGGAGCACGAGGTAACCAACGCGCCGCACTCGGATCCCATTGACGGAGTGAGAATCACGTTTCAGTTTGCGACGCATTGCTTTGTCTTTCAGCTCGTTCCAGAGCACATCGTCATGACGAAAGAGGAAGTTGCTGAACTTCTGGCAAGATATAAATTAAAGGAAAGTCAGTTGCCGAGGATCCAGGCTGGAGACCCCGTGGCTCGTTACTTTGGCTTGAAAAGAGGACAGGTAAGAAGAAAAAGAATGCAAATAAAATACATGCAACTTGTGTTCCCCGTCAAACTATTTTGTATCTACTTTTCCAGGTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01191	RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	Domain	Interproscan
PF03871	RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000783	Domain	RNA polymerase, subunit H/Rpb5 C-terminal	Interproscan
IPR005571	Domain	RNA polymerase, Rpb5, N-terminal	Interproscan
IPR014381	Family	DNA-directed RNA polymerase subunit Rpo5/Rpb5	Interproscan
IPR035913	Homologous_superfamily	RPB5-like RNA polymerase subunit superfamily	Interproscan
IPR036710	Homologous_superfamily	RNA polymerase Rpb5, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-