Gene detail

Detailed information of HS04326 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04326	SERUM RESPONSE FACTOR HOMOLOG	chr5	24303848	24311372	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04326

ATGGGAAGGAAGAAAATACAAATATCTCGGATTCTGGACCAGAGGAACCGACAGGTGAGCAAGATCTCACATGTATTTATTCTCTGCATGTTTACCTCAGCAATAATCTGGACGTATGATACAGGGGTTACAATACATCTAAATATGATGCAAGTTCATTCTTAGTCGACTAACTCGAGCAGTTTGATTTTAATCGACAACTCTGTAAATCTGAATTTCTACACACATGTTGTTTACCTGAAGTGTGCTCATATTTCCATGTAAATAAGTCATAAAAACTgccctctgaggggtacgtgagatttgtttgaaatatatatatatatagatataatagataaatataatatataaatattaaatatctaattatatatataatatataaatatatattatatatattatatattatatttaaaatcagcatccattaaaaaagcctttgaaaatagttattttataaatattcaataaaatgaattttatatatgcaaaatgctgcgtattacatttttttattcgtcctaaaatgctctgcactggtcaaaaatatatatataaatattttagtgaaaaaaggttaagaaccacGAATCGACTGAGAGGGGCACATGAAATTGTCACAATATGAAGAACGCGCCATGTATGTATAAATAGCACAACTTCTTATCGTGTAGTTTGTTTTTCTTAAAATTTAGTTTTACACTGAAACGTTATTGTCCTACGTTTATATCATATCGTGTGATTTCTGAATGCAAAACGTACTGAGAAGGATGAATATGTGATCATAAGTTTATATCTCCAGTGTCATGAATtTTTTCCTTGATTCATGCAATAAATCAGAACATATATACAGCACATATATAtttctgtatttaaataaaaaagattcaatgcattctggattcaatacaacaaatctttattaattttgcaagctgattatggcttttatattccaaaaaaatataaacagcataaaataaaatcttatatttcctttagaccaagtaaaaaaaatttaaaaaaagatttagtttaaagattttatccaggctgaaaccagaaaccggctcaggtgttttaattaatctgtcaagagttttaatacccaattatactacttttatactttttcatgatattctaatatttatagatagattttttttaattgtttaagcttttcataaataatcaagaataaaggaaaataatagcaatatatcagttgatttgtaatgaattgattatgatgacattttgtttttttaattgcattagaaaataaagaacttcatcacaatcactaatttttttctagtttcACATATATATTTTACAGTCGCATTAACAGCGATTCAGTCCGGGGTTCCAAGAGTTTCAAAGTCTTAAAATCTCAAATCAAACGTGCCGATCATAAAATCCAGTTCCCATACGGGATTAAAAACAAGAGATTGTTGTAAAATAGAAGATTTGTAAATTCACGTGCAGGAGATGCAACCCCATGTGCAGGTCACTGCACAGAGAGTGAAGTCATGGAGTAACACATGATGTGTACAGATGCATGTCCTGCAACATGCAGCAGGGACTTCACACGAGGGGTTAAAGGAAATATCACATTTTGATGTCTAGCTATAGCTGCACGTTACAGTAATTACAAAAGCTTCATTTTCTCACTGGCTTATCGAGGGCCAGGTGGGCGTCAGAGCCGCGACGGGGGGGGGGGGGACTCGAGCGTCGGGGACAGGAAGTCTGCTGTGGATTTAACAAAATGTGAAGGATCTAATGGTGAAAGGGAGATTTATTATTTATTTATGTTGTCAATTCCAAAAGGTCAGCGGTGGCACTCTTTCACCAGACGAACAGAATGCACCGAGCACTCTCACAGAGCGAGGATGTGTATAAAGTCTAAATAAAGAAGTGGTCGGTACACGGTAGAGGAAAGCTTCTTCTTCTTTATCAGTTTTGGTGGAAGATGAATCCGATAAAGCAGATTATATAGACAGAGAAGTTACATGCACAGATATTACTGGGACACAGAAATGTTCACATCACGCTCGTAATCTATGCTAATCGGTATTAAAAGAGAATAACAGATCAATCATACACACAAGAGATCAACGAGGACGAAGAAGAAAAAACGTGTTAAACTGAGCTGAAAAAATATGATTTGTTTCTCATATCTGATCTTCATGGCTGAATGTGTTTTGGTTGATAAGATTTTGGGTTGTTTTTTggGgGGGGGGGGGGGACTTGAGGACAGACCGCAAAGGCTTCTGGGAAAAACGTGTGATTTCAGGCTGTTCAATGTAGCGAGCAAACAGTTTGGATTTGTGTGTTTTTCTTTTCCATTAAAAAAAGAAGAatatatatatatatatattatatatatataGAGAGAGAgTTATTTATTGTGAAAGGTTTTTTTTCTTTAAAAAATAATATATTTAATATATATTATACCACATGAAAGGTTTTTTCAAAGGTTTTTTTTCTTTAAAAAataatatatttaaaatatatgtttttaatatatatatatatatatataaatgttgaaggtttttttccttttaaaaaatatatacaaaatataatatgaaacaaattatatatttatatatacatattaaataATCATTAATCTAGTAACATGGAAAAATAATAAAATGCTGATTATGTGGGAACCACAACACACTTAGGCGATATTTATACCCGCCAAAGCATGTTTCCACATATTTGACTTTTGGATGGCTTCAGGGTTGCCTCGTTCCttttaatgagacgagacacacacacatacacacacacacacacacacacacacacacacacgcacacacacacgcacacctctgcgtgtttcTCTCTTTAGGTGACGTTCACCAAGCGCAAGTTCGGCCTGATGAAGAAGGCGTACGAGCTGAGCGTGCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACAGCACCAACCGCCTGTTCCAGTACGCCAGCACCGACATGGACAAGGTGCTCCTGAAGTACACCGAGTACAGCGAGCCGCACGAGAGCCGCACCAACACGGACATCATGCAGGTGGCGCAGCGCggggggggggggcgggggggTGCGTTCGTTATGTCGCTCTACTAACTCTGGGTTCTCCACGCGCACTTCCGGTTGCTGCGTCAAGACGCTGCGCAGGAAAGGTTTCGAATGCTTGGAGCTCGACAGCGAGGAGAGCATGCAGGCGATGGCCGCGGAGAAGTACCCCGGAGGAGGGGAGGGCATGGACCTGTCGCTGGCCCGCCAGCGCTTCTACGTcagtgacaacacacacgtgcacacgcacacacacacacacacacacacatgcacgtacacgttaacacacaacacacacacataaacacacgcacacatgcacatacacgttaacacacacacataaaaacacacacacacatgcacatacacgttaacacacaacacacacacataaacacacacatgcacatacacgttaacacacaacacacacacataaaaacacacacacattcacgttaacacacaacacacacacataaacacacacacaggcatgcacatacacacagataaacacacacatagacacacacgcgcacacataaacacgtggataaacacgcacacacaaacacatacacacacataaacacatgcatgcacctacacattaacacacacataattacacacacttaaacacgcacacacataaacagacacacacaaacacattaacaaacacattaacacatacacacacataaacacatgcatgcacctacacattaacacacacataattacacacacttaaacacgcacacacataaacagacacacacaaacacattaacaaacacattaacacacacataaacacatgcatgcacaaacacgcacaaacacacacacataagcacacacattaaaacactcgcacacgtacacacacatatacacacacacacagggattctgatccttcccgtgatGGTTAATGAATTGAAACCCGTGAACGTGATGAGGCGGTTCCTCCTTTAATCCTCGTGGGTTCTGCTCTTCAGGCCCCGGCCCTCCTCTCACCGGAGGCCCAGTTCCTGGTGTCTTCTGGCTGTGAGAACGGCTTCCCCAACTCCTCCGGGCCGGGCCCaGCGGgCCCCCGGCCCGCGGGCTTCAAGTCTCTGAGCTCCAGAGCCGCCAGCGGCCCCGCGGCGCCGCTCGCCCACACGGCCTTCATGTCTCCACACTCAGGTGAGCGCAACGGTGTGACACACACGTCCTCCCTGTGGTTAATGTCctccatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtttataacagaagtgaatagcgatggcagggaagaagtcgactcagatgaagatttttccagcatttatttatttactcctgcagaagacaataagacacacattgtcttctggtctctctctctctctctctctctctccacccgcttccctcagcaatatattactattgtgtggaagacaggacgttaaaggacattaaatcgaaattatatcaattcttatcaaaaccatgactcgtgacatacaaaagggggaaacagcgaccccaagtggacgaaataagtaactgcgtgagtgagttacagtgactcagcagacgcggcgaaaattataacattaaaacacacatattgtcttctggtctctctctcgctgtacatccgcttcctaaacacgctaaacagactttatacggggaaaatatacaacagagcggccggaagtagctagcttaatataaatggcgcgaaagaggctgaattaaacagcctcaaaatgtatattttaaccgacactgtgatcgtattatcgaccacattcacatttataaagaatataacaaaatagtgcaacataatttcccccccacaacttacttatcctcaacaatagagaactattttgaggaaagacagggctacagaagctcaggagggtcagaagaggcgaaactcaatttccgcaggaaacagaattttctaaaaacacacaaaaaaatctcattaaaataaaatgcacacacactcaacaggatcgttgaataataaaccaaaaatttaagacaatacattgTGTATTTTGAACTCAGTCCACACATCTGGTCGGTCTGTTTTaTGAAACTGGCCCTCCACCAGTGTGAAGAGCGGCTGTAACCAGTTCTGTGGTTTTTGCCTCACACCCGCCCGTCGAGCCTCTCCTCCCGGCTCTCTCTGTTCTGAGACGCCGCTCCTCTCCCTCGGGATTTTCTAACAGCTGACTCCGATTTTTGGGATCAGTTCAAAATGGATATTCCGTCAGGTCACCAATAATATATCACAAACATCGACATGAACTTGCAAAAGCGTCGTCCATCGTCCTCTCAGGATCAGATACCAAATCAAGGGGCACGACCTAAAAGCAGAATTTTTTTTTgAATTCATCACACTTGTGCACAGAAACAGAGCGAGGTGGGAAAGGAAGAAATATCACAGAGAATAAATTATCCCCCCGTGACTGAAACCAGCTCACATCTCTTTTCACTTCCCGCTCCTCTCTTCTTCTTCTTTtgtgtgtgtgtgtgtgtCGCTGCATTAGGCATCGGCTACTACAACCTAAACCGAGCTCTGGAGATGAAGAGCcctcctccttctcctcttcctcTGAACATGGGCACCGAGAACCTGCGGGGGGACGCCGCTAATCAGGCCATGGCGGCCCCGCGCGCCAACCAGAGCTCCGCGGTGAGTTCACGGTCACTGTTCACTATTCTCcTACACGCTTATTACACGCATGTTGTcGGCGCGTTGCGATGACGTTCGAGTGTTTGACGGTTGCTCTTTCCCTCTTCCCCAGAGGGGGGTCTTGTACCAGGGCCTGCACAGCCTGGGGGGCTACGGCCTCCCGTCTCCCGGGGCCTCTGGTGCGTCCGCCCCAGTGGTGGCTGGGTTAGAGGAGTCTGTGTGTATTCAAGAAATAGTCCTTCACAGAACTCCTGAGTGTATAGATTCAACAAATAAGACTCCACTTGTTAATTGATTATTAGTTTTAGAGCTAGaTTAGCTGTTTCCAGTcCGCTAACCAGCTGTTTATCTTCTTACTCAAACGTGTCCAGCTGTATCGTTTCATAGTGGAGACTATCCATCCCCTCTTTCACTGATTATTTGTTaAACTCGTTTGTGTATTCTTCTTTTTAATATCTTTCTCTCTCTCTCCAGAGTACAGCCAGTCTGGTTTATATCATTCTGTTAGTCTACAACGAGGAGCAGTGAACCCCTGGCAGCAAGCACAGCCTCAGGACTCCAACGGGCTGCACATGAGCCCAGGGTGAGGAGATGGTGGATGATATGTGGGATAAGGACCTCTGCGAGGAGGAATTATGGCAGGAAGTTGAACCTGCACTCTTATTCACCTGTATTCACTCTTGCGGCGCAACGTCTaCATCAGGCGCCAAACAAAAATAACATTTTGTATGCATAAAATTGTATAAAAAACtattttcagcATCAGAATGCAAAACAATAAGTtAAGAGTAtGACAGATCAATGGGATACAAAAAGAAGcAGAAAAATAGCGtatatatatatgtatatttatatatatatacgctatattttctttcttatatatatatatttttttttttatctttataATCAAAAGAAAAAGATTAAATAAATAACAGAATGTATTCAAGAAAAAATATGAATCAAACATTTTAAATATGTCTatTTTtaatgataataataaaataataatttaaatatgaaataaatcaagttaataaataataTCAAGgAGAAACAAAGAAAATGAGAGACAGGATATAATAAAGAAAAAGTATGTAAATCCATAATACATGAAAAAAGCGAAAAGATATATGTAAACAAAAAAAATAACTTAATGATTGAGTGCAAATATGTTCTTAATTAAATATGAAGCCACACATTCATGGTTCCTCAACTGTTTTTTATTTTTCTCTTATCTTGTTTAAATAGAAGATTTGTGTAACTCATCCAATCAAACCAGCCTATTAAAAAAAAAAaGTCTAACTACATAAAACTGTTATCAAGCTGCACCAACTTAATAAATACTGACGTCGTTCAAGCGTCTCTCTTGTCGTGCTGTTCCCAGGATGTCCACTGGGGGGTGCTCCTTCTCCTCCCAGTCTTGCTCCTCGACCTCTCCGCAGATGCCCTCCCTCAACCTCAGCATCAAATTGGAGCGCAGCTCTCCGGAGCACACGtcctcctcgcccgtctcccctcctctccaccacctccGGCAGCACTCCCCGATGAGCAACCCCGACTCGGCTCGCCGAACGCCGCCCGCCGCCCTCGGGGCCAATGAGACGAAGGACTTTCCCAAAGCCCGCTACCCGCAGGACGAAGAGGACGGAGGGCAGCCGCTCAGGCAGCTGGAGATAAGTGACGGGTGGCAGAGAATGGGAAGGAAGAAAATACAAATATCTCGGATTCTGGACCAGAGGAACCGACAGGTGACGTTCACCAAGCGCAAGTTCGGCCTGATGAAGAAGGCGTACGAGCTGAGCGTGCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACAGCACCAACCGCCTGTTCCAGTACGCCAGCACCGACATGGACAAGGTGCTCCTGAAGTACACCGAGTACAGCGAGCCGCACGAGAGCCGCACCAACACGGACATCATGCAGACGCTGCGCAGGAAAGGTTTCGAATGCTTGGAGCTCGACAGCGAGGAGAGCATGCAGGCGATGGCCGCGGAGAAGTACCCCGGAGGAGGGGAGGGCATGGACCTGTCGCTGGCCCGCCAGCGCTTCTACGCCCCGGCCCTCCTCTCACCGGAGGCCCAGTTCCTGGTGTCTTCTGGCTGTGAGAACGGCTTCCCCAACTCCTCCGGGCCGGGCCCaGCGGgCCCCCGGCCCGCGGGCTTCAAGTCTCTGAGCTCCAGAGCCGCCAGCGGCCCCGCGGCGCCGCTCGCCCACACGGCCTTCATGTCTCCACACTCAGGCATCGGCTACTACAACCTAAACCGAGCTCTGGAGATGAAGAGCcctcctccttctcctcttcctcTGAACATGGGCACCGAGAACCTGCGGGGGGACGCCGCTAATCAGGCCATGGCGGCCCCGCGCGCCAACCAGAGCTCCGCGAGGGGGGTCTTGTACCAGGGCCTGCACAGCCTGGGGGGCTACGGCCTCCCGTCTCCCGGGGCCTCTGAGTACAGCCAGTCTGGTTTATATCATTCTGTTAGTCTACAACGAGGAGCAGTGAACCCCTGGCAGCAAGCACAGCCTCAGGACTCCAACGGGCTGCACATGAGCCCAGGGATGTCCACTGGGGGGTGCTCCTTCTCCTCCCAGTCTTGCTCCTCGACCTCTCCGCAGATGCCCTCCCTCAACCTCAGCATCAAATTGGAGCGCAGCTCTCCGGAGCACACGtcctcctcgcccgtctcccctcctctccaccacctccGGCAGCACTCCCCGATGAGCAACCCCGACTCGGCTCGCCGAACGCCGCCCGCCGCCCTCGGGGCCAATGAGACGAAGGACTTTCCCAAAGCCCGCTACCCGCAGGACGAAGAGGACGGAGGGCAGCCGCTCAGGCAGCTGGAGATAAGTGACGGGTGGCAGAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002100	Domain	Transcription factor, MADS-box	Interproscan
IPR033896	Domain	MADS MEF2-like	Interproscan
IPR036879	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR050142	Family	MADS-box/MEF2 Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-