Gene detail

Detailed information of HS04264 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04264	VESICLE-TRAFFICKING PROTEIN SEC22B	chr5	22643294	22646398	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04264

GAACCGTATATTTTTGCGGACACTTGGTTCCGCGTGACGAGGCGACGGACATATTTGGCAGTGACGCACAAAGCTCTCGCGTTTCCGGCCAGCTCAGCGCGTCGGTCCCTGCGGTGTTGTCAGTTTACAGCCCGTCAGACGCTACCTGTAACTTTCGTTGGGCCGCGGAGAAACACACCGAGGGAGATGGTGCTGCTGACGATGATCGCTCGGCTGGCTGACGGCCTGCCGTTAGCCGCCTCAATGCAGGAGGACGAGCAGGTTAAATGATCAgCTTTGTGTGTGGTTGTTGTTGCTAGCTGTGTGTTCGCTGTTGTCGGTGCAGGCTGTTCACGCCTCTAGGTTGACACGTTAGCTTAACGTGGCTGCCGGAGGCCCGTGTGTACCGACACAGCCTTTTAATGTACGTCGAGTGACTCACTCGGAGCAGGTCAGGTTTGAACTCTGACCTTTTTATTCCGATGCAGCTTCTAGGCATTTGAACGTCGCATAACTTCACCTGTAAGTTCTGTGAGGCTTAAAAcAGCTCAATTTAGGTCTTAAAAATGTGCTTTCCACAGTCAAACACgATATATGTGTTGTATCAAAAGCAAAAAGGTTTGCCAAAACATGCCTTTTATCAGTTTTGATTGAACAATTATCGTAACACCTGATTTataggcacaggtgagcATCTTTTCCAGTAGAATGTTTCATATTGCAGGTCAATGGGTATATTTAAGGTTTTAGCTGATCATATACATTTCTGCATGTATGTATGTTGGACCGATAAGAAACCAGAAATAGTTCAAATTATGTTTGAAATAAAGCAAAAACAGTGTTGCTTTTACAGGCTTTGTCCACCAGATGGCGCTGGCATGTTTCTTTTATATCTCAAATGATCTGCTCAGTAGATGCTTACCATTTAACACCAAATTTAAGGAAATTCTTATCAGAATTATAATTTTtTACTTTTTCAAGAATACCGGCTGCAATGCTGTTAAATGTTATAATGTCTCAGTTaCCAAGTGGTTCAGATGCAACGTCCAATGTTCGATTGCATCGTGAACCAACAGAAAATAATTCCCGCCTCATAACTCCAAATAGACACAAACATAAACGTAACACATGAGAAATGTTAAAAATGGAcCcaCATTGTGACATGTTAAGTTGTTGCATTATGTTTGCGCATGACCTACCAGGAGTCTAACGTATTTCCCTTCCACTCTCTTGTTTGCTCTCATAAAGGGAAGTGAAAAGGTTTGTTGTGTCTCTGCTCTGTGCGTCAACATCATACGTGTGTATCTGTGATGCGACAGTGTTGCTGTAAATAATCCGGTCATTTGCTAGAGTCAACCACACCCAGGAAATTGAATACCATCCACATACTGGCCATACATTACCTCAAACAGCTGGGTGTGGCTTTTCGTTCTTTAAAAAAACACACCAGACATTGCCTCTTCAGTCTCAGTTGAGGCGTCACTCGGCTGAGTCTGTCTGCAGTGTTTATTTTAAACACACTTTACAGGGCAAGAAATGCACTCCaATAGAAATAGTGTGAAATCTGGACTGTGGGCCGATTGCTATTTTAGTACAGTtAAAAATCACACTCATATTTATGTCTTTTCTGGTGCTACTGTAGTGACGTTTTCTTGTCAGCGCCGCCTGCAAACAACGCATACAaCAGTATATTTCTTGCCCCGAGTAAACGCCATATTTCTTGTGaGAGTTGTGAGTGAGTCGATTTGTTACTGATCATATCTTTTTTTcacccccccCCCCCCATCGGTTCAGTTGGGTCGGGACCTCCAGCAGTATCAGAGTCAAGCGAAGCAGCTCTTCAGGAAACTTAATGAtCAGAGTCCCACACGCTGCACTTTAGAGGCTGGCTCCATGTCATTTCAGTGAGTATGAAGAAGCGCGTGAATCCAGTGAAACGCATGATAACACAGTGGCATAGAAGACAAATGCATATAGAATATTTCTGTAATTTATTTCACATTTTGATGTTCTCCTTGCAGCTATTTCATCGAGAAGGGCGTGTGCTATCTCGTGCTGTGcGAAGCCAGCTTTGCCAAGAAGCTGGCCTTCGCTTACCTCGAAGACCTGCAgGCGGAGTTTCACGAGCAGCACGGAAAGAAGGTGCCCACCGTGTCCCGGCCCTACTCCTTCATTGAGTTTGGTAAGAGAGAGCCGGGAGCTTCCGAAGCGCCGCTTCTCCGGGCCGAAAAAGTCCAAATGCATTACCGGGCATTACTAAGTTGCAGTTGTGATGACACATTCCGTGAGGCGGGTGTAGACAAGAATCTGCCTTTTTTTTCTCCCCATATACCCTCCTCTCTTCAATCCCGTGCTCCCattacattacattacattacatgtcatttagcagacgcttttatccaaagcgacttccaataagtgcatttcaacctagagtataaaccaagaacaacaagaacacaggaagcaacacttccttaactcagtcgaaccacaaaagcaccacaataagtgccatcccagtgccactgaaatgcaaatctgtgttttaatccagatatagtcggaaaaggtgtgttttcagtcccGATTGCATACATTTAGCATTTCGTCACTTCTCATTGTGTCCCTCCTCAGACACCTACATCCAAAAGACCAAGAAGTCGTACATTGACAGCCGAGCGAGGAGGAATCTGGGCAGCATCAACACGGAGCTGCAGGACGTCCAGAGGATCATGGTGGCGAACATCGAGGAGGTGCTGCAGCGAGGAGAGGCCCTCTCTGGTGAGTCCACGCCGACGCAGCGTGTCCTCCTCCCGCCGAAGGATAAACGCCGAGGAGCGGCCCTCCTCATATTCACGCCGTGGAGCTCATCTGTGTGTGTCTCTCTCTCTCGCCTCCCTTTTTTACCCTCTCCTCGTGTGTTTGGAtcctcctcctcctcctcctcctccgcctccCTTCTCTGCAGCGCTGGACTCCAAGGCCAGCAACTTGTCCAGCCTGTCGAAGAAGTACCGGAGCGACGCCAAGTATCTGAACACCCGCTCCACCTATGCCAAGCTGGCGGCCGGTGGTGTGTTTTTCATCATGCTCATTGTCTATGTACGCTTCTGGTGGCTCGAACCGTATATTTTTGCGGACACTTGGTTCCGCGTGACGAGGCGACGGACATATTTGGCAGTGACGCACAAAGCTCTCGCGTTTCCGGCCAGCTCAGCGCGTCGGTCCCTGCGGTGTTGTCAGTTTACAGCCCGTCAGACGCTACCTGTAACTTTCGTTGGGCCGCGGAGAAACACACCGAGGGAGATGGTGCTGCTGACGATGATCGCTCGGCTGGCTGACGGCCTGCCGTTAGCCGCCTCAATGCAGGAGGACGAGCAGTTGGGTCGGGACCTCCAGCAGTATCAGAGTCAAGCGAAGCAGCTCTTCAGGAAACTTAATGAtCAGAGTCCCACACGCTGCACTTTAGAGGCTGGCTCCATGTCATTTCACTATTTCATCGAGAAGGGCGTGTGCTATCTCGTGCTGTGcGAAGCCAGCTTTGCCAAGAAGCTGGCCTTCGCTTACCTCGAAGACCTGCAgGCGGAGTTTCACGAGCAGCACGGAAAGAAGGTGCCCACCGTGTCCCGGCCCTACTCCTTCATTGAGTTTGACACCTACATCCAAAAGACCAAGAAGTCGTACATTGACAGCCGAGCGAGGAGGAATCTGGGCAGCATCAACACGGAGCTGCAGGACGTCCAGAGGATCATGGTGGCGAACATCGAGGAGGTGCTGCAGCGAGGAGAGGCCCTCTCTGCGCTGGACTCCAAGGCCAGCAACTTGTCCAGCCTGTCGAAGAAGTACCGGAGCGACGCCAAGTATCTGAACACCCGCTCCACCTATGCCAAGCTGGCGGCCGGTGGTGTGTTTTTCATCATGCTCATTGTCTATGTACGCTTCTGGTGGCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF13774	Longin	Regulated-SNARE-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010908	Domain	Longin domain	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR042855	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR044565	Family	Vesicle-trafficking protein Sec22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45837	VESICLE-TRAFFICKING PROTEIN SEC22B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005793	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0012507	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0048280	Biological Process	vesicle fusion with Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-