Gene detail

Detailed information of HS04236 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04236	LIM/HOMEOBOX PROTEIN LHX	chr5	22111583	22113344	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04236

ATGTGCGAAGATTGCAAAGGAGACGAAGAGCTGCTAGGCACATGCACTGAGGACAGGAGAGACATTATGGTATGCATTGCTCAAACTTATTCTGCACAAAGAGTGACCATTGTTTTGTTTTTTTATTTAAAATTGTTACAAATACAGTTTTAAAATATTTGTTCTCGTTGTGGCAAATATGGAGAATAGTGTTGCTCCATAAAAGGCCTGTGTACGACACATTATAGCCTCTGAGATCAGCGAACTTTCTTTCAGCTGATTATGAGTGAGATAAATTCACTTTGATTTCATTTGCTTTTTATAATTGTCATTTTGTTAAAGTGATAATTGCTGCTAATATTATTCTGTAAACTGCCTTTTTTCTCACTTTCTAAGAAAAGATATTGACACACAAAAACAAACAAAAAAAgAGTTGAGCTGGAAAAACTAGTtttttacaacatgaagtttaaacacgttgtgtgtgtgtttgtgtttgtgtgtgtgtttgtatgtgtgcatgtgtgtgtgtgcacaggctcctgcgctgtatgttcgggGCTTTATTTTCTAACCGCACGTCTGATCCCTTCAGGGCGCGCCGGTGGAAGTTTTGGATGAGGACGCGACCTCGCTGCAGGCGATGGCGTCTGCGCCTCTGCTAGGCAGAGCGGTGTGTGCGAGCTGCAACGAGGACATTGTGGATAAATATTTATTGAAGGTAAACACTTTTTACACTTTTCTTTTCTTCGAGGAACTTTTTTTTTTACATTTTGGATTATGACATCCTTTTTTTCTCGTTTTGTTTGGATTTCTGTGCGTCTTGACGGACCTACACACCGTGATTGACATCTGCCATTTTAAATGTCTCCCCTTTGTGCTTCAGGTGAACGACTTGTGCTGGCACGTGCGCTGCCTCTCCTGCAGCGTGTGCCAAACCTCGCTCGGCAGCCACACGAGCTGCTACATCAAAGAGAAAGCGGTCTTCTGTAAACTGGATTACTTTAGGTATGTGCATCGATCCTCATCCTTGCAGCGACAACAGAAGCTATAGCGGAACGAAATTATTCAACGAAGGCTGTGCATTATAACGCGCATTGAGGAATATTAATTATGCATAATAATAGTCACAAGACTTGACATTTCACTTTTGTTGTATCGAACATGTTGCTGAGCAAGGAATGTGACTTCTCTACAAGGTGGAGACAAGATGCTGCAGTCACTTGAATTAAAACTCCTCGACTCATTTCATTTAACGGGGACTACTTTTTCTCAAAACTTACCAAAGGCAGCCGCGGAGTCTTCCTCCAGTGGTCCAGGTTCAATTCTAGATTTATTCTGCTGGATACAACAACAACAAAAATTAAAAGATGCCGGAAAAGACCCTCTTCGCCTGCATCTTCTTCGGCCTGTGACGCGGATATAGTCTAATTTGCATCCACCCTTCACCCGCAGAAGATACGGCACCTGGTGCGCGTGCTGCGGCCGGACCATCCACTCCACAGACTGGGTGCGCCGGGCGAAGGGCAGCGTGTTCCACCTGGCCTGCTTCGCCTGCTTCTCGTGCAAGAGGCAGCTGTCCACCGGGGAGGAGTTCGCTCTGGTGGAGGAGAAGGTGCTGTGCAGGGTCCACTACGACTGCATGCTGGACAACCTCAAGCGGGCCGTGGAGAAGGGTGAGCCGGCCGGCCCGCTGCCCGCGGAGGGACTCGGTCCTCGCTCTTGTTTTGAACGTTCGGCCATTACTGATAACACGTTACCCCAGATTCGTTATATTTTGACAATGTGCGAAGATTGCAAAGGAGACGAAGAGCTGCTAGGCACATGCACTGAGGACAGGAGAGACATTATGGGCGCGCCGGTGGAAGTTTTGGATGAGGACGCGACCTCGCTGCAGGCGATGGCGTCTGCGCCTCTGCTAGGCAGAGCGGTGTGTGCGAGCTGCAACGAGGACATTGTGGATAAATATTTATTGAAGGTGAACGACTTGTGCTGGCACGTGCGCTGCCTCTCCTGCAGCGTGTGCCAAACCTCGCTCGGCAGCCACACGAGCTGCTACATCAAAGAGAAAGCGGTCTTCTGTAAACTGGATTACTTTAGAAGATACGGCACCTGGTGCGCGTGCTGCGGCCGGACCATCCACTCCACAGACTGGGTGCGCCGGGCGAAGGGCAGCGTGTTCCACCTGGCCTGCTTCGCCTGCTTCTCGTGCAAGAGGCAGCTGTCCACCGGGGAGGAGTTCGCTCTGGTGGAGGAGAAGGTGCTGTGCAGGGTCCACTACGACTGCATGCTGGACAACCTCAAGCGGGCCGTGGAGAAGGGTGAGCCGGCCGGCCCGCTGCCCGCGGAGGGACTCGGTCCTCGCTCTTGTTTTGAACGTTCGGCCATTACTGATAACACGTTACCCCAGATTCGTTATATTTTGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0021884	Biological Process	forebrain neuron development	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-