Gene detail

Detailed information of HS04207 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04207	40S RIBOSOMAL PROTEIN S27	chr5	21626129	21630747	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04207

AGAGCAAGACACCGCCTGCTCGGCCTCTTCCGGGTACCGACCTGTACACGTACGTCAGAACATAACAAGAGAGTACAGTTGAGGGCGCACTTAAAGTCGCACTTTATATCTCGTATTTGCATTGGAAGAGAAGCCTGCGTGATTTGTGCAAAAATGCAAGTAAGTGGAAATATTTGTGTTGCTCAATTTCCTTTTGTAGTTAAAAACGTCAGAACATGCAGAACAGTTTTGATGGACAGCCTTGTCATCAGTCAGTGGATACACACAggcacgtgcacagatagagccctagtggtgctcaagcaccagcccctttgccctggatgagtaaagtgccctttttgctggagaaacattttttttattcatccgtatttaagaataaatgttactctctctgtcatcaagtccccccaaatgtgttttatcatccgacggggcatttatttgagttcttgtgagaatttcgccctgacatgctccgcgacgctcacgggccccccctcctctccctcccccgccacgctcctcctcctcctcctccacttcctcctccgcgcagtgctcctcgcgccaccaaacgggtgcacctccttctcctctgacccgcagcatcagacacacagatcatgacggtgtttgtcccctgacgttgttttgtgatcaaccacaacattagcgctgctgaaaacatgacgtcacaactggtccgacgtttcctaaaaaaatatgtttttaaactccgtgatttcaaagcctcgtccagctgtttactgacgttCAgGGgcggttttcctacaggcggtataggcggccgcctgggcgccattcagaggggcgcaaaaaaaatgcgcctttttgctgggcagttttttttgcacccccatctatatCTCCAACCAATATTTTGACGGCAATGCCAGCCAGAAAACAAACAAAAAACATTaaagctgcaagcagcgtcgaacgggtcctcgctcatctggtcctcgctcatcggagacgccggccggagcggagacgccggccggagacgccggccggaggagacgccggccggagacgccggccggagacgccggccggagacgccggagaggagacgccggccggagacgccggccggagcggagactctggcgggagaggagacgccggccggagacgccggccggagcggagacgccggccggagacgccggccggagcggagactctggcgggagaggagacgccggccggagacgccggccggagcggagactctggcgggagaggagacgccggccggagacgccggccggagcggagactctggcgggagaggagacgccggccggagacgccggccggagcggagacgccggccgggaggagagacgccggactcggccagactctcttctctcttctcttctctcttctcttcttcttctcttctcttctcttctcttttcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcctctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctGGATGGGTATAtgctggaaatcactgctatatactctgtttcgctgctccgtgacgtcacgactacgagcgacgtcaccgcatcaaagcgcagactgtttccatggtgactcagtgacgTCACGGAGAATGTCTTGTCCGCGAGCGCGCGAttacagtttttctcgattgcttaaacacattttttgaaagcatgcctcgttttctcaaaactctaaacacaaatcccaaaaccactcacacaaaatgcaaaacccttgatatctcctgcaaaatgcaactttgctttcaaaacagtgttatgtcacctcaaaagggtattttgttttcaaatgacaaacacagcccattatatgagtagacattctaagcatcgattgaacactgatgtgctcaatggaaaacactatgaaatgggaaaacaccagtatgaaggccttatcaggagcattatgccttttcatgtccagtgttactgtatgctttctcctgttgtaaaatattgtgaatgtataatgttttaactcaaaatataaaacagcacacaaatatacaactaacatgtttctttcttttttctaattttttcacagaacaaacaatagaaaatagaccactacagtcaacaaaaaaagaaagaaaagtgtaaataaaaaaggacaaaaaaatactcctctgcctctctggtctcctctaccttcgatgttttcatcCattcttcttcaaatcaggaggtcacctgtggcccttattgctaaagccttgattccaaattgcacaacagccgtggaaatggaagttttgccaattgaatagcagtgtgttctgtctgaacacaaggaggttttggcattgatgaagtgtgcaaagtagagtgttttgaagaaagtgtggttaacaattgaaatctgtgtctaaagcagataattgtgcttatagtttagcagaattggtttagggagttggcacatgagttacaggttgtggttattgtgttctaagttccagtttttgtgtggaatcaatcgagaaaaactgtaaCATCCGCCAGCTAAATCTgccagtaggtggcgctttgagtctgtgaacatattcatgcatcatgtgtcccttcgtgaagtgtagaccatgtcatgtaaattcaatgtaaaaaaaaaaagtgatgaaaaaaggcggtcacattattttgggcacgacgagggagtgaatgtgcaccgttgatcaggggggcgtagccggagcgtagttcagcacagatgtgacattttctcagggattttgttctttatttaatgtttgttcattgttgcgatcgttgttctgtttatttgaaagaaattcagtcttgcagagcaaaatagcgtttgaaagttgaaattccgttttCGTGCAAAATCGtTTTTTtCTTCTTTTTTTTGGGGTGGGGCggggggggggggagtgaagctcgcctaggacgccaaatgtgctagggccgcccCTGCTGACGTTAGTTATGTTtagagagagagagaagagaaagagagagacaagagagagaaaagagagagaagagagagaagagagagagagaattcttattccgttctatttaacaggggctagtctaggatttgcgtggccagactgaaaaaaaaaatcatacagcctctcttgttcagagggccgggccaaatgtggaggcgggccgtatctggcccgcggaccggagtttgaggaccactgctcttggctgttgatgtctatcaatatcgctcattttgaaaatgacgtcagagggcaatacggatctgtatcagaccagcgaggagggcaatacgtggctggcatgacgacccatgagccaatcagaacgcttgtactgttgttgctatataataattcatctttattcataaagaaaatgtaagctagtggtctgatgctgccagaggaaacacaggtcgaggatgtattgcatcatcagtgtattgctgctaatgcttcaactctgtcagaatttttttttagcattgggtgcccttttttttggtttgagcacctgccccccaaaatgtctgtgcacgtgcctgGATACACATAATATCATATAACAGAATTATACATATGTATTAATCAGTTGATACATGGGGCGTGCAGTGGTAATATGCATCAGTGTATTTTGAAATCCCTATTATCTGTATTCAGTGTACAGGTGTCACGCCTTAGATATGATGCTTGGGCTTGTCTGGACATGTTTGTGTGGGATCAACGTATAAATTAATTTATCAGACTATAGAGGTCACTACTGCACAATCAAAACAAACCAAATACCAATCTCCTCGTCATTTAGTGGGTACGTGAAATAATAATAATTTAATTATCTGAAAGTACAAAGGTAAACATCCTCTTATCTCGGTTGCAGAATAAGGATCTGTTGTATCCCAGTCTTGCCAAGGAGAGGAGTAGGCACAAGAAGAAGAGGCTGGTGCAGAGTCCAAACTCCTACTTCATGGATGTCAAGTGCACAGGTAAGACTGCAATATTGGTCTTGTGTTTCTCATGGGATTAAGTAAGAAATGGTTTAAAGTTGTACATTCTAATTGATCTGATTCTCTGTTACTCCCCAGGTTGTTACAAGATCACCACCATCTTCAGCCATGCTCAGACAGTGGTACCTTGTGGAGGCTGCTCTTTAATCCTCTGTCAACCAGCAGGGGGGAAATGCAGACTAACTGAAGGTAAAATACATTTATATATATAGACGTTGCTTTGGATTTCTTCAAGATATGAATGGGAATGGACATATATGACTGTTTGTAAAGAACAGTATCAATTATATCCTTCTTACGGTTTTGACTGTGATGAGATATTGAATTAATTTGCTCTTTGTCTGTCTAGGCTGTGCCTTCAGAAAGAAATATTCCAGAGCAAGACACCGCCTGCTCGGCCTCTTCCGGGTACCGACCTGTACACGTACGTCAGAACATAACAAGAGAGTACAGTTGAGGGCGCACTTAAAGTCGCACTTTATATCTCGTATTTGCATTGGAAGAGAAGCCTGCGTGATTTGTGCAAAAATGCAAAATAAGGATCTGTTGTATCCCAGTCTTGCCAAGGAGAGGAGTAGGCACAAGAAGAAGAGGCTGGTGCAGAGTCCAAACTCCTACTTCATGGATGTCAAGTGCACAGGTTGTTACAAGATCACCACCATCTTCAGCCATGCTCAGACAGTGGTACCTTGTGGAGGCTGCTCTTTAATCCTCTGTCAACCAGCAGGGGGGAAATGCAGACTAACTGAAGGCTGTGCCTTCAGAAAGAAATATTCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01667	Ribosomal_S27e	Ribosomal protein S27	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000592	Family	Small ribosomal subunit protein eS27	Interproscan
IPR011332	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR023407	Homologous_superfamily	Small ribosomal subunit protein eS27, zinc-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11594	40S RIBOSOMAL PROTEIN S27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-