Gene detail

Detailed information of HS04193 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04193	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	chr5	21119736	21121525	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04193

ATGGATCTGAGACAGGAGCTCCCCACGGTGTCCTCGGCCACTCATATCCACCTAAGTGCGACATCATCAGGCTCCATCCCGGTGTCCTTGGCCGGGAGCCTTCTGCGCGGCCCTCCGCTCATCCTGCGCACCACGGACAAGTACCCGCGCACCCCGAAGTGTGCCCGCTGCAGGAACCACGGCGTGGTGTCtGCGCTGAAGGGCCACAAGCGCTACTGCCGCTGGAAGGACTGTATGTGCGCCAAGTGCACACTGATCGCCGAGAGGCAGCGCGTGATGGCGGCGCAAGTGGCGCTGaGGCGGCAGCAGGCGCAGGAGGAGAACGAGGCGCGAGAGCTGCAGCTCCTCTACGGCACCGCGGAGGGTCTCGCCCTGGCCGCCGCCAACGGCATCATCCCACCGCGTCCGAACTACGAAGTGTTCACCTGCGTCAACAGCGAGACAGGTGAGTGGAGCAGCTTTAAGAATCATTCTTCTTCTTCTTGGAGCAGGAGAAGTGTAAACATCCGCCATGCAGGTATCAGTCCCGACAGGCACAAGCAAGAGGAAATGAGTGATCTCTATAAGTAGCATACAAGCATTTATATTGTTGATTATTCCATTTATATTAAACTGTTAAAGTCTATTTTGTTCAGCTTGCAATCTGGATGCTAAGAatatatatatatatatatatatatTCGTTAAGCATAACATGTATGCTTTATATCATGTATTTTACGTTGAGATTTGCCCAAGGATCTTATACTGAAGCTTCTTTAAAAGCCTTATTTCATTACTTTCCGTTGCTTAATGCACTGGTTTTGACTATCACGTTTACTCGGCCTGCTGTAAGATTCATATGACCCCCCCCCCTCCAAAAAAAACCCTCCCCCATCTCACCCACTGATGTTCTGAATATGTCAACAGATTCAAGTATCCTGAAGTACGAGCTGTTTCCAAAGAGCCAGATGTCCGCGTCCGTCGCTTCTCAGCTGATCGCGGGGAAACCGGCGTCCACCGAGAGTGACTCAGCCCCGGGCATCTCTTCCCCGGACGGTCGACACGGAGGCTCGGGTTCCGAGAACGGAGACAGCGAGTCTTTCATAAGCTCGCCGGTCTCCAAGCCCGTGAAAGACGGAGGGCAAACCCCTCGCTCCGTCAGCTCCCTCGGTTCTGATTCTGGCTCCGACACCGACAAGGACGAGCAGGAGCCGTCCCCGTCCTCCGCGGCCTCCCGGCACATGAACGCCATCGACATCCTGACCCGAGTGTTCCCGAGCCACAAGCGCAGCGTCCTGGAGCTCGTGCTGCAGGGtTGCGGTAAGGACGTGGTGCAGGCCATCGAGCAGATCCTCAACAACAGCGGCGCGCAGGGCTCCAACAAGGCCGGGGCAGAACAGACGTGGACGGCGGAGAGGGTGCTCCAAAACGCcCAGCAGTCTGCCGCGTCCTCCGCATCCACGACCGCCCCGACGAGGCCCATGTTGCCCGGAGCCATGACGCTCAGTAAtCGCTCaGCGTTCTCTCCTCTCCAGCCGAACTCCCCGCACTTCGCCGCGGACCCCAGCGTCTATCCTCTGAGCACCCACCTGGGGCTCAACCCGCTGCGGCTGGCCTATTCTGCGCACAGCCGGGGACTGGCCTTCATGACGCCTTACTCCACCACCGGGTTGATGCCCATGGCCTTCAGGCCCCCGATGGACTACGCCTTTAGCGACTTGATAAGGGACAGGACAATGTTACACAAGGAGCAGGGCTATGCCACCGGCCTGTACGGGCCTTTGGTCAACAACACGCCGGAAAAACAGATGGATCTGAGACAGGAGCTCCCCACGGTGTCCTCGGCCACTCATATCCACCTAAGTGCGACATCATCAGGCTCCATCCCGGTGTCCTTGGCCGGGAGCCTTCTGCGCGGCCCTCCGCTCATCCTGCGCACCACGGACAAGTACCCGCGCACCCCGAAGTGTGCCCGCTGCAGGAACCACGGCGTGGTGTCtGCGCTGAAGGGCCACAAGCGCTACTGCCGCTGGAAGGACTGTATGTGCGCCAAGTGCACACTGATCGCCGAGAGGCAGCGCGTGATGGCGGCGCAAGTGGCGCTGaGGCGGCAGCAGGCGCAGGAGGAGAACGAGGCGCGAGAGCTGCAGCTCCTCTACGGCACCGCGGAGGGTCTCGCCCTGGCCGCCGCCAACGGCATCATCCCACCGCGTCCGAACTACGAAGTGTTCACCTGCGTCAACAGCGAGACAGATTCAAGTATCCTGAAGTACGAGCTGTTTCCAAAGAGCCAGATGTCCGCGTCCGTCGCTTCTCAGCTGATCGCGGGGAAACCGGCGTCCACCGAGAGTGACTCAGCCCCGGGCATCTCTTCCCCGGACGGTCGACACGGAGGCTCGGGTTCCGAGAACGGAGACAGCGAGTCTTTCATAAGCTCGCCGGTCTCCAAGCCCGTGAAAGACGGAGGGCAAACCCCTCGCTCCGTCAGCTCCCTCGGTTCTGATTCTGGCTCCGACACCGACAAGGACGAGCAGGAGCCGTCCCCGTCCTCCGCGGCCTCCCGGCACATGAACGCCATCGACATCCTGACCCGAGTGTTCCCGAGCCACAAGCGCAGCGTCCTGGAGCTCGTGCTGCAGGGtTGCGGTAAGGACGTGGTGCAGGCCATCGAGCAGATCCTCAACAACAGCGGCGCGCAGGGCTCCAACAAGGCCGGGGCAGAACAGACGTGGACGGCGGAGAGGGTGCTCCAAAACGCcCAGCAGTCTGCCGCGTCCTCCGCATCCACGACCGCCCCGACGAGGCCCATGTTGCCCGGAGCCATGACGCTCAGTAAtCGCTCaGCGTTCTCTCCTCTCCAGCCGAACTCCCCGCACTTCGCCGCGGACCCCAGCGTCTATCCTCTGAGCACCCACCTGGGGCTCAACCCGCTGCGGCTGGCCTATTCTGCGCACAGCCGGGGACTGGCCTTCATGACGCCTTACTCCACCACCGGGTTGATGCCCATGGCCTTCAGGCCCCCGATGGACTACGCCTTTAGCGACTTGATAAGGGACAGGACAATGTTACACAAGGAGCAGGGCTATGCCACCGGCCTGTACGGGCCTTTGGTCAACAACACGCCGGAAAAACAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00751	DM	DM DNA binding domain	Family	Interproscan
PF03474	DMA	DMRTA motif	Domain	Interproscan
PF20624	DMRT5_DMB	DMRT5, DMB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001275	Domain	DM DNA-binding domain	Interproscan
IPR005173	Domain	DMRTA motif	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR026607	Family	DMRT family	Interproscan
IPR036407	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR046472	Domain	DMRT5/1, DMB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548	Biological Process	sex differentiation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-