Gene detail

Detailed information of HS04092 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS04092	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	chr5	17709637	17711350	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS04092

ATGGCTGGAGTTCTGTTTGAAGATATCTTTGACGTAAAGGACATTGATCCGGATGGCAAGAAGTTTGACAGAGGTGTGTGAAATGTCATTATAAATTGATCTATTTATATTTATTTACAATCATGTATTCCGTGTAGTTTTCAATTCATGTCCTTCACTTGAGAGCTGCTAATTACCTAATTCAAAATCTGCTACCACTTGTTTTTCTCAAGTATCTCGTCTGCATTGTGAAAGTGAATCTTTTAAGATGGACCTTATCTTGGATGTGAACATTCAAATCTATCCGGTTGATCTTGGTAAGGAGCAATATTTTTGTGTCTATTTATTTCAAGTTAAATGATGATTGGAAGTCTTTTTTTTGTCAATAACATAATCATATTCTAAAGTCCCTTATCGTTCCACATGGCATCAGTCAATTTACTCTTCCTAAATCAAAAGCAATCATTCTACGCTTTCATAAAGTAGTCACCTTGGGTGCACTCAAACTGCTAAATGTTACTTCCCCTATATGTCGGAGCTCCTTTAGATGTAAAGTACCATGCTTAAATAACCgTGTCTATGCCCACTAAATAAACAAACTTTATTACATGTCTCCATTTCATTAAGGTGACAAGTTCAGGCTGGTTATTGCTAGCACGTTATATGAAGATGGAACACCAGACGACGGAGAGTATAATCCTCAGGATGACCGGCCATCTCGGTGAGACAATTTGCTCTTTATTTTTTTATGCATTTAATATCAGTGTATATATTATTTCTGTAACTTCCCTGTGTGATATACAATGTTTTCTGCTGGTTTAGATATGTGCTCTCATTTAACTTTGCTTACATTCCCAGAGCGGACCAGTTTGATTATGTGATGTATGGGAAGGTTTACAAGATTGAGGGTGACGAGACTTCAACAGAAGCAGCAACGCGCCTGTGAGTGATGTTTCTTGCTTTGACTGaagctatgttaagctatgttaagctagttaagctTATATCTTTAATATAATAACATATATAAACCATTAGCATAATAACAAGTAGCATTGCAGTTGTTATTGATACATTATTTCTGCAAAcATTATTGAATTTAGCCtAGAAACATAGATGCAAATCATTCACCATTTGGCCTCCACACATCTTGGGCATGATGAAGAATAAAACAATAAAGAAAAGTGCTGAATAATTGCGTCAAAGATTATGGCTTTTATTGTGAAAGGTACAGcaaaacttgattggttgatcactttatttgcggtgcgaaagctcagaaaaatccactttgttccaataaaaaacaattgcacctttttgcagcataattttttcaatctttgtgaaagtattcataacaaaagcaaGTTAAAAGACAAAATATTAACCCGATAAATAATCTTCATAAAGATTGATAATATCTGGTTGTACAAATATACATTTAAATCGAATGACTTGAAAATGCAAATGATCAGCATCAGTTGTCTTTCATTGATCCAAAGTCATAACCTGCCCAACAAACATCTGTGAGACATGATACATTGTGTATCGGTTATTACCAGCGTTGGAATCATTTATAACTTTAATCATGTTTCATGAATGTGTCCCTTCTTTCAGCTCTGCCTATGTGTCTTTTGGTGGCCTCCTCATGAGGCTCCAAGGAGACGCCAACAACCTTCACGGCTTTGAGGTTGACGCCAGGGTCTATCTCCTCATGAAGAAACTAGCCTTCATGGCTGGAGTTCTGTTTGAAGATATCTTTGACGTAAAGGACATTGATCCGGATGGCAAGAAGTTTGACAGAGTATCTCGTCTGCATTGTGAAAGTGAATCTTTTAAGATGGACCTTATCTTGGATGTGAACATTCAAATCTATCCGGTTGATCTTGGTGACAAGTTCAGGCTGGTTATTGCTAGCACGTTATATGAAGATGGAACACCAGACGACGGAGAGTATAATCCTCAGGATGACCGGCCATCTCGTCCCAGAGCGGACCAGTTTGATTATGTGATGTATGGGAAGGTTTACAAGATTGAGGGTGACGAGACTTCAACAGAAGCAGCAACGCGCCTCTCTGCCTATGTGTCTTTTGGTGGCCTCCTCATGAGGCTCCAAGGAGACGCCAACAACCTTCACGGCTTTGAGGTTGACGCCAGGGTCTATCTCCTCATGAAGAAACTAGCCTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03870	RNA_pol_Rpb8	RNA polymerase Rpb8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005570	Family	DNA-directed RNA polymerases I, II, and III subunit RPABC3	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10917	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-