Gene detail

Detailed information of HS03990 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03990	SNRNP CORE PROTEIN FAMILY MEMBER	chr5	12622678	12624694	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03990

CTCGTCATCAACACTCGACACACAGGCGCCAGTAAACCTGCAATAATGGTAAGAACTCAATTGTGAACGTCTGAATTTGTTTTTAGTTTACATTAAATGTATTATTCGAAGAGTCGGGTGAGGCGTTCAAGTACTCACAGCTCACTAGTTCGCCTAAAGTGGTTGAATTTGCACGCAGTCTGCAAACCGGTATCGTGCTCGCCTTTTAGCCCGATGCTAACATCACGTTGTCATGTCGTTGTGTTTTCTTTCTCTTTTGTAGCTTTTCTACTCGTTTTTCAAGTCGCTGGTGGGCAAAGATGTGGTGGTGGAGCTCAAAAACGACTTGAGGTTAGTATTTGTCATGCAACTTCCCTTCGTTTGGTCtAGCCGCTCTAAATTTCCGTCAGCgAGTCACGAAGAACGGCGCTGCACCTTCACGTTGTGTGAGGAGAGGAAGAGGTCAAACTGCATTTAAGAGCTCTATCTGTGCACAATAATAGAAACACCGTGCAGTTAAATGCAGTGGGGTTGTTGTGCATCTTAAATATAACAGTACAATGTAATTCGTGTTATTTTGTCCTCCACCTGTATGTCGAGATCAGGGATAATTCATcCTTATGAATTCCTGCAGTCTTTATAAGAGCAACTTCTCTCTTTTCAGCATCTGCGGAACGCTTCATTCTGTTGACCAGGTTGGAAATTATGATTAATTCCCCCTTAAATTGACTCTACGCCAATCAGCTAATTTCTTCTACTATCAGACTATCAAGATCTGACTGAGCATATGTTCTTGTGTTTTTCAGTACCTGAACATCAAGCTCACAGACATCAGTGTCACCGATCCAGAGAAGTATCCACACATGGTAAGTCTGGGCTGTCTTTGCACCGATCGTTCCGTGTTCTTCTGCGAGGACCCGTCGggggcggctgtagctcagtggggtaagggggtcgtcctgcaaccccaaggttgtcggttcgatctcggctctccccattagttgttgcaagtcgaagtgtccttgagcaaggcactgaacccccagttgcttcccgggcgcatcactgcagcccactgctccttaataaataaggatgggttaaatgcagagaactaatttccccttggggattaataaaagtatatatctatctatctatCCCCCTCCAGTGCTCTGTTTGAAGGAGGATATCCCGGCCCGGTTTAACAGCTCGGAGAAATCCTCAAACTTAACATTGTTTATCGCTGTGGTACTTAATGACGTTTCAGGCGTCTGAAACAAATTAGTTTGTCAGCTGTAAAGATTCTGCGACAAACAATGGACAAATCCTAAATACATGTGCACACGCGTGTGTATGAGCGGGATGCCAGTCCCCAAAAAGCGACATGCGAGGATCTCGTTGGGAGTTTCCGGATTCTCGCACGCAAACACGGAACTCCTTCATGTGTTGAATATGTAATCCATGCAAAAGTAACGTGCATATATTACAATAAACCAACGAAACTTAGTTAATGCGTAGAATATGGTGTAACATGGCAAACGTGAAACACATAAATCATTTGTCAAATTAACAATACTTTATGGTAATTTAAACATGTTGTACGTCTTTTAATAAATGTGAAAACTGAGTTTGTGGCATCAACAAGGGTTCAATACTTAATTTAAATATGGTCAGAAAGAGAGATTGTTTTTTTTATTCGTATTATTATACCACAATAAATGTCAAAGTAAAGCCAATGTCAACAGAACTCCCATGAAACCTTGTGCAGTTGCGTGAAATGAGATAATTTGGTAAAAAAATAATGAACACTTCGTTAAACGCCATCTAATGGATTATAATCCGGACTGCTCTGTCGCGTTGATGTGATTcTCTTCAAACTCTGCATTATCTTGTCTCAATTTGCCCCTAGCTGTCCGTGAAAAACTGTTTCATCCGTGGATCGGTGGTCCGGTACGTCCAGCTGCCCGCAGATGAGGTGGACACTCAGCTCCTGCAGGACGCTGCACGAAAAGAAGCGATGCAGCAGAAGCAGCTCGTCATCAACACTCGACACACAGGCGCCAGTAAACCTGCAATAATGCTTTTCTACTCGTTTTTCAAGTCGCTGGTGGGCAAAGATGTGGTGGTGGAGCTCAAAAACGACTTGAGCATCTGCGGAACGCTTCATTCTGTTGACCAGTACCTGAACATCAAGCTCACAGACATCAGTGTCACCGATCCAGAGAAGTATCCACACATGCTGTCCGTGAAAAACTGTTTCATCCGTGGATCGGTGGTCCGGTACGTCCAGCTGCCCGCAGATGAGGTGGACACTCAGCTCCTGCAGGACGCTGCACGAAAAGAAGCGATGCAGCAGAAGCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR016654	Family	U6 snRNA-associated Sm-like protein LSm2	Interproscan
IPR047575	Domain	Sm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005688	Cellular Component	U6 snRNP	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-