Gene detail

Detailed information of HS03967 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03967	THYMIDYLATE KINASE	chr5	12201339	12202757	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03967

GAAAACTCCCTCTCCGCGTTGAGATTTAGCCAAGAGGCTCGGCCGTCAGCCTCCAAGCCGTCAATAATGGCGTGCAAGAGAGGAGCGCTTATTGTGCTGGAGGGAGTGGACAAAGCCGGGAAGACTACCCAGTGTAAGCAGCTCATTCAGGCGCTGCAACAGAGCGGCAGACCCGCGGAGATGATGCGATTCCCCGGTGAGGCATGCCGTTGATGGTAAGACAGGGCCTGATGTGCGCAGTATTGACGTGTGTGACTGACCCGCCGTGCTGCGGTCTCTCGGGCTCAGACAGGACCACGACCATTGGACAGCTGATCAGCGCCTACCTGGAGAAGAAAaGCGACTTGGAGGACCACGCGGTTCACCTGCTGTTCTCCGCAAACCGCTGGGAACTGGTGTAAGTTACGTTTAAGTAAACTCAGTTTACTTCAATACATTTTTTTAATTGTCTAGATATTTCATGAAGACAACCCCAAAAACATCAAATTGATCATCCTACTACCAACAAGTACTGATCCATGGGTCCATTTAGTCCAAAACTCATCAAtgtgccacactgttgcactggatgacgtgtacctttattaccataacactgcagtttcatcctggtgccctaaatactcaccaaaacatgtggttgtattcctaggtctaaaaagtccccagcaaaagcaatatttacacaagcctttcgagtgacctttcctcaaatctgcagcacccagcagtatgagggaatagcttttcctgaaaaatGTTCACCTACGTGCCGCAGCAGTGCACTAAAACAATTTTGACCACAGGCCTCTAATGAGGAAGAAGCTGGAGCAAGGCATCACTCTGATCGTGGACCGGTACGCCTTCTCCGGAGTTGCTTTCACCAGCGCAAAGCCGGTGAGTCTTCTCTCCGCCGGTTCAAACCAGGAGCGCATCGGACGCCGTTgTTCTGCGCGTGTTGGAGAGGAGCGACCGATGGCGTGAGCATGTTCATCTCCTCTTTCAGGATTTCTGTCTGGACTGGTGCATGAAACCCGACGTGGGGCTGCCAAAGCCAGACCTGGTCATGTTCCTGCAGCTCAGTCCAGCCGAGGCCGCCCTCAGGGGTCAGTTTGGAGAGGAGAGATACGAGACCAAGGTATTCCAAGGAGTGGTTCAACAGAAGTTTGAACAGCTGAGGAAGGATCCCTCCATCAACTGGCAGGTATGAGGCCGGTCCGGGTTACTCATTTAAACTCAGATTTGGAaTTTTTTTtTTCTTCCCTAACCGATAGCAGTGAAACATCTTGTCATCGAAATTGTCTGCTGCAGGTGATCGACGCTTCTCAGAGTGTTGAGGATGTGCACAAGAACATCACGACCCACAGCCTCAACACCGTTGAGGCGGCTCAGAACCTGCCACTCGGAGAGCTGTGGAAGGAAAACTCCCTCTCCGCGTTGAGATTTAGCCAAGAGGCTCGGCCGTCAGCCTCCAAGCCGTCAATAATGGCGTGCAAGAGAGGAGCGCTTATTGTGCTGGAGGGAGTGGACAAAGCCGGGAAGACTACCCAGTGTAAGCAGCTCATTCAGGCGCTGCAACAGAGCGGCAGACCCGCGGAGATGATGCGATTCCCCGACAGGACCACGACCATTGGACAGCTGATCAGCGCCTACCTGGAGAAGAAAaGCGACTTGGAGGACCACGCGGTTCACCTGCTGTTCTCCGCAAACCGCTGGGAACTGGTGCCTCTAATGAGGAAGAAGCTGGAGCAAGGCATCACTCTGATCGTGGACCGGTACGCCTTCTCCGGAGTTGCTTTCACCAGCGCAAAGCCGGATTTCTGTCTGGACTGGTGCATGAAACCCGACGTGGGGCTGCCAAAGCCAGACCTGGTCATGTTCCTGCAGCTCAGTCCAGCCGAGGCCGCCCTCAGGGGTCAGTTTGGAGAGGAGAGATACGAGACCAAGGTATTCCAAGGAGTGGTTCAACAGAAGTTTGAACAGCTGAGGAAGGATCCCTCCATCAACTGGCAGGTGATCGACGCTTCTCAGAGTGTTGAGGATGTGCACAAGAACATCACGACCCACAGCCTCAACACCGTTGAGGCGGCTCAGAACCTGCCACTCGGAGAGCTGTGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02223	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018094	Family	Thymidylate kinase	Interproscan
IPR018095	Conserved_site	Thymidylate kinase, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039430	Domain	Thymidylate kinase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10344	THYMIDYLATE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0004798	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006227	Biological Process	dUDP biosynthetic process	Interproscan
GO:0006233	Biological Process	dTDP biosynthetic process	Interproscan
GO:0006235	Biological Process	dTTP biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-