Gene detail

Detailed information of HS03965 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03965	ALLANTOINASE	chr5	12189976	12193223	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03965

ATGGAGCTGGGATCAACGGTCGTGGCTGTGAGGAGTGAGCGGGTGCTGCTCGGTGACCAAGTcCGCCCTGCTGTCATCGTAATCAAGGATGGGAAGATACATCAAATCCTCTCAGATAGCGACTTCTCCGGAGGTGAGGTAAGCCTTGGACTTTTTTTCTTTAGGACACTCCCCTGTACGTTTGCAAGGTCTTATGCATGAAATTAACCCTCCGAAAAATGTAATGCACTCAAAACAATGGCGTTGTGGTGATGGCAGGTGTTGGACGTGGGCGACAGCGTGGTGATGCCCGGCATCGTGGACTGCCATGTGCACGTGAACGAACCAGGCCGAGTCTCCTGGGAGGGCTTCTGGACCGCCACGAGGGCTGCTGCAGCCGGAGGGGTGACCACCATTGTGGACATGCCGCTGTAAGTTCACTCCCCCaaaaatatataataaatatgaaatataaattaaaaaatcaatCTAAACATCGCTATCTAACCTCACAAGGCCACCGTTGGGTGGAGGGGGGTACCTCCTCTCCTCGGGCCAGGATGACATGTTTGAATTATTGGGCCTGAACAATTTGTACATTTGTGGGGTATTTGTGTAAAAATAAGAAGAAATGAAAAGGAAAACATTGTTTCTCCCTCTCCTGATCATTTCCATGTAACAGCAATTTGATGTGAGGTTGCCAGCTGTGAATTGTTCTGGTTTAAATTCCCACAGAAACAGCATTCCTCCAACTACCACTGTTGGAAATTTCCAAGAGAAGATGCTTGAGGCAACAGGGAAGTGTTTTGTAGACACGGCCTTCTGGGGAGGCGTAATTCCTGATAATCAGGTAGACACACAAACAAAAATTAAACACCTTCTCAGCCGGACTCGCTAACATTGTAGACCAAATGATGGAGCTTGCCTCTCCTTTTTCCAGCTGGAGCTTCGGCCCATGATCCAGGCCGGAGTAGCGGGCTTCAAGTGTTTCCTCATCCACAGCGGGGTGGAGGAGTTCCCGCACGTGACGGAGCGGGATCTACACACGGCCATGGCGCAGCTGCACGGCACGGGGAGTGTCCTGCTGGTAACCTACCTAGCTCCGCCCCCGCAGCATCTTCCCTAAACGAGCCCCAAATAAAGAGCCATCCTAATTGTCTCCCTTTAGTTTCACGCTGAGATGGACGTTCAGCAAACAGCAGCGGAGAACGGCGGTAACAAAAGATACTTTTTATCTCTTGCCGTAAAGTATGTGACGCATGAAGAGAGTCAACGACTTACGTGTCAAGATTGGGATTTTCTTTCTAACAACATCCGAAACTCCTCTCACTTTACTTTGAAATGGCATCATTTAAGCTCTATCTGCTAATCCACACATGGAGGTTCCCCGTACTAATATCATATCTAAACCCCTGCCTGCACCACCAGACCCTTGTCAGTACTCCACCTTTCTACAGTCCAGACCCGATGTCATGGAGATGGAGGCCATTCGCACCGTCACAAAGCTCTGCCTCCAGTACCAGTAAGATCAGCAGCGTGGCATATTAGCAAataaatatatatatattatatatGTGTGTAGCAGTGATGTCACACTGAGCCAACTCTcTCCACTTCAGGGTGCGGTGCCACATCGTCCATTTGTCCTCCGCCGAGCCACTGGAGTTGATCCAGGAGGCGCGGCGGGCCGGAGCCCCCCTGACGGTGGAGACCACCCACCACTACCTCAGCCTGTGTGCGGAGGACATACCGGCGAAGGCCACACAATTCAAGTGCTGCCCCCCCATCAGAGGATCTGCCAACCAGGTGAACGGAAGAGGAGGCTCAGCAAATGGGTGACCGGGCTTTGTTGTCCTTCGATCACTCGCAGATGATGGATTTGTTTTCACTCCCCACTCCAACcacacacacacacacacacacacacacacaggagcagttgtggtcCGCGCTGAAAGCCGGGCAGATCGACATGGTTGTGTCGGATCACTCACCTTGCACCCCAGACCTGAAGAAGCTGGATAGCGGAGACTTCACTGAGGCTTGGGGGGGCATTTCTTCTCTTCAGTTTGGTATGGACCAGTGACAATGATcacacacacactcacacacacgcacacacTATATTTGTCTTAGGTTCCCTAAACCCCTGGGAAGGGAAGTGTTTGATGTGACAACATCACGCTCCGTCTCAAAATTGTGTCAAAAGGTCATCGACTCATCGGTGTCCCACTCAAACCGAATCGGTAATCAGCTCGTCGGTTTACTGGGGAGCCACTCGAGAGACGTCACGTGACACACGCTTATTACCGCACGGATTCCGTCTGTGAATTGCCATTCCGAGGCGTTGAGCTGTGAATCAGATAGCTCTCCTCACATTATTCCCCCGTTCATGGAGTGGCGTTGCTGTCGAAGAGACACTGGCTCAATAATATTTATTTATATGCACGGTTTTCTTTCTGCGTGGATTAGTTGCTCCCCTCCCACAACCACACCGGGCGAAGTTCACAGGAAGGTAAACAGGTGCCGAGTGCCATCTTCAGAAGACGGAACAATCATTTACTGTTCAGACCTTGAGAGGGGAGGGGGGGGGTTCAAAGTCTGACGCCAGGACCAGTCCCATCCACAATGTTTACTTTTGAAATAATTCCACAAACGCAGGAGACAAAAAACAAAAAAACATATTTGGAGGGTGTCAACACGGTTCTCTACAGGCCTGTCAATCATCTCTCCTCCCATTCGCAGGTTTGCCTCTGTTCTGGAGTTCAGCCAGTAAGAGAGGCTTCCAGCTGTCCGATGTGGTGAGACTCCTCAGCCAGCAAACGGCCCAGCTTAGTGGCCTCGAGAGCAGAAAGGGAAGCCTAGCCCCCGGCTACGATGCCGATTTGGTCGTATGGgacccagagagggaatttgaggtcagtgtgaaatctgattccatatttaggacagagaggagctcCATACTTCACTGTATTCATTTTTTTTTTTTTCACAGATTAAAGAAGCAAGCATACAACATAAAAACAAGGTAAGCCACATTAATTGAACAAGCGATGTGAGGAGCATGCTTCTAAtgtgactgagtttatgattgtgtgtgtgtgtgtgtgtgtgtgCAGCTAACTCCTTACCTTGGCGTCACACTGCGAGGAGTGGTGTGTGCCACCATAGTCGGGGGGCAGCTGGTTTTTAGAGAGGGCTCCTTCTGCCCCGAGCCTCTGGGGAAGCTTCTCCTCATCCCTCCGAGGAGAAGTCAAGTCCAACTGATGGAGCTGGGATCAACGGTCGTGGCTGTGAGGAGTGAGCGGGTGCTGCTCGGTGACCAAGTcCGCCCTGCTGTCATCGTAATCAAGGATGGGAAGATACATCAAATCCTCTCAGATAGCGACTTCTCCGGAGGTGAGGTGTTGGACGTGGGCGACAGCGTGGTGATGCCCGGCATCGTGGACTGCCATGTGCACGTGAACGAACCAGGCCGAGTCTCCTGGGAGGGCTTCTGGACCGCCACGAGGGCTGCTGCAGCCGGAGGGGTGACCACCATTGTGGACATGCCGCTAAACAGCATTCCTCCAACTACCACTGTTGGAAATTTCCAAGAGAAGATGCTTGAGGCAACAGGGAAGTGTTTTGTAGACACGGCCTTCTGGGGAGGCGTAATTCCTGATAATCAGCTGGAGCTTCGGCCCATGATCCAGGCCGGAGTAGCGGGCTTCAAGTGTTTCCTCATCCACAGCGGGGTGGAGGAGTTCCCGCACGTGACGGAGCGGGATCTACACACGGCCATGGCGCAGCTGCACGGCACGGGGAGTGTCCTGCTGTTTCACGCTGAGATGGACGTTCAGCAAACAGCAGCGGAGAACGGCGCACCAGACCCTTGTCAGTACTCCACCTTTCTACAGTCCAGACCCGATGTCATGGAGATGGAGGCCATTCGCACCGTCACAAAGCTCTGCCTCCAGTACCAGGTGCGGTGCCACATCGTCCATTTGTCCTCCGCCGAGCCACTGGAGTTGATCCAGGAGGCGCGGCGGGCCGGAGCCCCCCTGACGGTGGAGACCACCCACCACTACCTCAGCCTGTGTGCGGAGGACATACCGGCGAAGGCCACACAATTCAAGTGCTGCCCCCCCATCAGAGGATCTGCCAACCAGgagcagttgtggtcCGCGCTGAAAGCCGGGCAGATCGACATGGTTGTGTCGGATCACTCACCTTGCACCCCAGACCTGAAGAAGCTGGATAGCGGAGACTTCACTGAGGCTTGGGGGGGCATTTCTTCTCTTCAGTTTGGTTTGCCTCTGTTCTGGAGTTCAGCCAGTAAGAGAGGCTTCCAGCTGTCCGATGTGGTGAGACTCCTCAGCCAGCAAACGGCCCAGCTTAGTGGCCTCGAGAGCAGAAAGGGAAGCCTAGCCCCCGGCTACGATGCCGATTTGGTCGTATGGgacccagagagggaatttgagATTAAAGAAGCAAGCATACAACATAAAAACAAGCTAACTCCTTACCTTGGCGTCACACTGCGAGGAGTGGTGTGTGCCACCATAGTCGGGGGGCAGCTGGTTTTTAGAGAGGGCTCCTTCTGCCCCGAGCCTCTGGGGAAGCTTCTCCTCATCCCTCCGAGGAGAAGTCAAGTCCAACTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006680	Domain	Amidohydrolase-related	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR017593	Family	Allantoinase	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050138	Family	Dihydroorotase/Allantoinase Hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43668	ALLANTOINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000256	Biological Process	allantoin catabolic process	Interproscan
GO:0004038	Molecular Function	allantoinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006145	Biological Process	purine nucleobase catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0050897	Molecular Function	cobalt ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-