Detailed information of HS03951 in Pseudoliparis swirei Gene info
Gene IDAnnotationChromosomeStartEndStrand
HS03951FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEINchr51166237311672607+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013KH_1KH domainDomainInterproscan
PF05641AgenetAgenet domainDomainInterproscan
PF12235FXMRP1_C_coreFragile X-related 1 protein core C terminalFamilyInterproscan
PF16096FXR_C1Fragile X-related 1 protein C-terminal region 2 DisorderedInterproscan
PF16097FXR_C3Fragile X-related 1 protein C-terminal region 3 FamilyInterproscan
PF17904KH_9FMRP KH0 domainDomainInterproscan
PF18336Tudor_FRX1Fragile X messenger ribonucleoprotein 1, Tudor domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR004087DomainK Homology domainInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR008395DomainAgenet-like domainInterproscan
IPR022034DomainFragile X messenger ribonucleoprotein 1-like, C-terminal coreInterproscan
IPR032172DomainFragile X-related protein 1, C-terminal region 1Interproscan
IPR032177DomainFragile X-related 1 protein, C-terminal region 3Interproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR040148FamilyFragile X messenger ribonucleoprotein 1Interproscan
IPR040472DomainSynaptic functional regulator FMRP, KH0 domainInterproscan
IPR041560DomainFMR1, tudor domainInterproscan
IPR047427DomainRNA-binding protein FXR1, second Tudor-like Agenet domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10603FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0001934Biological Processpositive regulation of protein phosphorylationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003730Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0006417Biological Processregulation of translationInterproscan
GO:0014069Cellular Componentpostsynaptic densityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030424Cellular ComponentaxonInterproscan
GO:0030426Cellular Componentgrowth coneInterproscan
GO:0036464Cellular Componentcytoplasmic ribonucleoprotein granuleInterproscan
GO:0042803Molecular Functionprotein homodimerization activityInterproscan
GO:0043025Cellular Componentneuronal cell bodyInterproscan
GO:0043197Cellular Componentdendritic spineInterproscan
GO:0043488Biological Processregulation of mRNA stabilityInterproscan
GO:0044326Cellular Componentdendritic spine neckInterproscan
GO:0045182Molecular Functiontranslation regulator activityInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan
GO:0051489Biological Processregulation of filopodium assemblyInterproscan
GO:0098793Cellular ComponentpresynapseInterproscan
GO:1902737Cellular Componentdendritic filopodiumInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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