Gene detail

Detailed information of HS03941 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03941	BETA-CAROTENE DIOXYGENASE	chr5	11405105	11411763	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03941

ATTTTCCCCTGCAGTGTGGAGCATCCTGCTGCAGGCTACAAGAAGATCTTTGAGACGGTGGAGGAGCTGAACGAACCTCTACCTGCTGAGATCAGTGGTAAGAAAGAGAGAGGGGGCTGCTCCATGTTGTTTCTTTCTTTTTCTTACAACAGAAAGTCTTTACAAAGCCGTTTTAATGGAAACCTTCTGCATCGTCTGATGGATTGCTCTGAAAGGACTTTTCTGGGAACCCACTCCTTCTCTTTCTGACCAACACTGGCATGTTTGTGTGCCAACTATAAAAGGCTCCAGGCATACTTTGTGACCTCAGGATGTTCAGCAAAACTGCTTCTGCCTATGTTGTCATCATACTTTATTGCATTTACTTTGGATTTAATGGACCGTCAAATTATGTGACTCGAGAGGATAAATTATCTGGAAAAAAAGGgttaatgctttttacctttgcattgaaaatgcggaaggttatgttttgatcgccgtgtatttctttatttctttatttatttgtatgcgtgttcctcgcataacaaaaaagttttaaaccgaatcgcatgcaatttggtgggatgattggttattatccggggaccatttgattagattttgtgatcgatcgggtcaaaggtcaaggtcatgaaaaggtcaacatcttctttttaccatagcgcggtcaatttatatccaattggcatccaactaatgccaaaatgttcataattaaatgcccaatcttgtgatatgcgaaggtatgcgctctaccgagtgcccgttctagttGCATTTACTTTGGATTTAATGGACCGTCAAATTATGTGACCCGAGAGGATAAATTATCTGGAAAAAAAGGGTTAATGCTTTTTTCTACTATTATAGAAATGAAAAGTTGTGATTGTCTCTAAAATTCTAAATTCTACGGGGCACCATTTTGTTTGCAGCACCTTTCATCATAAAATATGTGACAAAGTACGATGAAACATTTGCGTGATGGAGTTCCAACTAATTCCTCTTTGGGTCACATGTTCTGATGGCTCACAGAAGTTGGTGTAACACTTCGCTGGTTAAGCTTAGCTCAAAGGCGGAAGACGGGGAAAGATCACGAAGAAACATGTTACATCTTGTTTGTTTGCTGTATCTTGTTTGGGCCCACATATGGGATGGATTATTTCATAATTGAGCCATGTGCTTATAAACACtaagtctgaacaacagcatgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTCAGGTGTTATACCTTCATGGCTTGGCGGCAGTCTTCTCAGGATGGGTCCAGGTCTTTTCGAGGTGGGTGGTGAACCTTACTACCACCTGTTTGATGGACAAGCTCTCATGCACAAGTTTGACCTGAAGAACGGTCAGGTGACCTACTACAGGAAGTAAGAAGACACACCTGTTTGTTCTCCTATGTGTTCGTCCTCCCCTCCTGTGTCTCTTTCTGTGGTGTTTGGCATGGTTCTGGGTCCAAGGTAGTGGGTCCAGGAATGTTGCAGATATTTTATGACCTCTGTTTTCTTGTTCGTGTTGTGCAGCTGAGGCAAAGAGTTGCCAGTATATTCATCCAACTGGAATGTGGCGGAGACAAAAACAATACTCTGCTAGCTGCCGGCCACAAACATCCGTCATCCGTCTCCAATAGTTTTGTCGACTGAGCAGAATCAGCAATGTGTTTTTCCGGAATTCCAAAACCACGTTGACGGTTTTGAACCACAAATGTTGTGTGCCCTTCTTAAGATTAACTGACACGGGATGTGTGTAATCCGTCTGCTCAGGTTCATCAGGACGGATGCGTATgTCCGGGCCATGACGGAGAAGCGAGTGGTCCTCACTGAGTTTGGAACCGCGGCCTACCCAGACCCCTGCAAAAACATCTTCTCCAGGTGAACCACAGACACTATTAGTGTAGGTGCAGTGCTCATGGGCAGCAGGCAACAACATGTGGAAGAGACTCAGTCACTACTTTCATATGTGTCTGTTGAATAGGAAGCTGGAGACAGTTTTTTTCTCACTATTCAGTTTCAACACTAAAGCTGAGTAGCTTCAGTGATTTAACGACCTTATTTGTCCATCCCACGCACACGTTTTGAGAACATTGATTGTTGTTGGTAACATTGTTTAGTACCATTTGTCCTCCACAATTACACCCACGGTACCATAAATATAACAGTAAACTTCCTTAAAGTTGAAACAATAAGTCATATCATCAATTAGTTGTTCAACAGAAAATTGATTAGCAACTATTTGGAAAATTGTTGATTTGTTTGCTGGACCAGAtataagttattaaactgaatatattttggggtttgagacttttggtttgctcaaaaaagctgtgtgagaatgtgaacttagactttgggtaattgtgatgcacattttttttaatgaatcaaataaataaatacaaatctaggaattaatcaagaaaataattttgattgattaatcaatagtgaaagtgattgttgttacagcCCTAAACTATTCATTATACTACAGAACTACCATACAAGTTTGGGTCTGTTTTATGGATGTAATTAGGTTTTTGATAATATtacagatgtgttgttctatacatatatatatatatatatattatatatatatatatatataatgccccacagcgttaacatattgtaatattcttattaaaGCGTTACTCACACAAACACACCAACGTATAATCATCATCTTTCCTGGTTTTTAGATTCTTTACTTACTTCAGAGGAATCGAGGTGACTGATAACTGCCTTGTGAACATCTGTCCAATCGGTGAGGACTTCTACGCCGTCACAGAGACCAACTACATCACGAAGGTTGATCCTGATTCGCTGGAGACTTTAAAGAAGGCAAGTGCTGACCGGTCGACCTCATGTGCGTAAACATCGGTCTCGCAACCAAGACTCCACTGATGAAGAATGCAATAATTGTTTTCTTCTTTTTAATTACCAGGGTTACGTTACATCTTAACTTGAGTACATTCTCGCCATTTCAGTTTGAAGACAAGAAGTTTTATACATAAAATGTTGACTGACACATCCTTTATACATCTTTAGGATATATGATTGATCTGGTAAACCCTCATCAGTCTGGTTCTTTCTCTATTCATCATATTCAGTCTTTGTGTGTGTTACATCTGTATTTATGTCAGGTGGACCTGTGTAAGTACCTCTCTGTGAACGGGGTGACTGCCCACCCCCACACCGATGCAGATGGGACAGTCTATAACATCGGAAATTGCTTTGGCAAGAACATGAGTCTGGCTTACAACATCGTCAAGATCCCGCCTGCTCAGAAAGGTGAGAAAAGCAACTCAGCGGACTGACTATTTATTTATTTTCATTATGAAAACACTCACAAAGACCATGCTTATGTGACACACTATCTATTACTGTGGGTTTCCAGATAAGTCTGATCCCCTGGAGAAATCCCAGGTGCTCGTTCAGCTGCCCAGCAGTTCGAGGTTGAAACCCTCCTACGTCCACAGGTAGACTCGGTAGATGTCTCACGATGAACACACAACGCAGTGAAGTCCACCCACAATGCATTGTTTGTGTCTGTGACCCCCTgAAGACGTTGCCACTGCTGCTGACGGATCCctttctgtctctctgcttgtctgtccgtctgtAGTTTTGGTATGACAGAGAACCATTTTGTGTTTGTGGAGCAGCCGGTGAAGATCAACCTGTTCAAGTTCCTGTCGGCTTGGAGCGTCAGAGGAGCCACATACATGGACTGCTTTGAATCCAACGACAGCATGGGGGTAGGCCGGGGGCGGGGCCACGGGTTCATGGGTGGTTGACTTTTCAGTTTCATGGATGGACTAGGAGGCCTGAACTAGAACCTATGTATTAACTCATGAAGTGACACTTGTTGTTGGTCAATCAAACACAACCACaAAGAGAAACATAATTACCAAAAAAGATCCCCCCCTCCCACTGCgCCGAACACTCCACATTTAAAAGTGTCTAAACCGGCCCCTGAGAGTAGGAAGGCGAGTGTTTGATTGATCACATGACTGTATCTGTTCATATaGAGAgtgtgtgtgtgtgtgtgtgtgtTGCAGACATGGTTCCACCTGGCCACTAAGGACCCAGCATATTACCTGAGCAGCCACAAaTTCAGAACGTCAGCTTTCAATATCTTTCACCACATTAACGCCTACGAGGAGCAGGGCTTCATCGTGGTCGACCTCTGCACGTGGAAGGGGTGAGGGCGACCCTCAgGCCGTGTCTGAGCGAGTGTTGTACGGACAGTGCAGTTGTCCCACCCTGACATCTCCCcCTCTGTTTTTGCAGTTACGACTTTGTGTATAACTACCTGTAtCTGGCCAACATAAAGGAGGAGTGGGAGGAGGTGAAGAAAGCAGCGATGAGAGCTCCCCAGCCGGAGGTCAGGCGATacgttctgccactggatatacacagggtgagggagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagcacacacatgaccccgcctcctattaggacataggagttctgtgagctaGCTGGCTAGCTTTGCCATCTCCAGAGCCGTCAGTCCAGCTCTCATGGGCTCATTTTCTGCAGTAGGGTtatcatgaaagcatggtggaattagcacggtaactagctaactagccggccgctaaataagtcattgaacagcttaatCCTTAATTCACACACTCaCAGTGTAGGGATGCACATTGCTAGGATAAGTGACTGCTTTGGATAATCTGGATAAGTGACTGCTTCTCCTTTTCTGTACCCGGTGTTGCATGAAAGCATGGTGGAGTTAGCCATCTTTGTTCGCTGTCTGCTTGTTAGCCATCTAATTCCACCATAGCCTACTTTTATGCCACACTGGCTACAGAAAGCGTTATGGATTCTGGCCCCCAACAACAAGCAAGAGGGCATTCGTGTTTGCTCCAGTAATTCCTTTGTTTCTATTCGGTTATTGGTTAAAATTTTTTTTTTAATGAGTTAACATTTCTTTGGTAGGCCTACCTTCCTAACAAATTGAATCAATTATTTGTACCGTTTGTATGTAAATATTATCCAAAATACCTGCAGTATACCGTAATTTATTCTTAATATCATACAAATAGAATTGCAATtAAGTTGTATTAAAATAACTAATCTGAAGAGTAGTTTCAAATGGTTATGATGTCCTTTTGCACAAATCAAAATGTGGTGGTCATCCTCGATCAGTATTTCATTCAAGTCAGACTTTGCACATTTTCTTTCACTGTTTGTTTGTGTTTTCAGGAAGAGCAGGGGAAGAATCTGGTGTCcCTGTCCTACACTACAGCTACTGCGGTTCTTCGCAGTGACGGCACTGTCTGGCTCGAACCtgaagtcctcttttctggaccaagacagggtaatacacacacacacacacacacacacacacacacacactatctatatatatatatattactcacCCCGcTGTCTCTCTGTCAGCCTTTGAGTTCCCACAGATTAACTACTCTCTGTGTAGTGGGAAGAAGTATTCCTTCGCCTACGGTCTCGGGCTCAACCACTTCATTCCTGACAGGGTACGAGCGCTTTTCTCACGAGACAGAGTTGGTGCTTGTCTCACCACCTGAAAATCAATCTCAGTCTGCGACCGCTGGTTGTTTATTGTTGACATTGTCATGTAGATAGTCAAGCTGAACGTACAGACCAAAGAGACCCTGGTGTGGCAGGAAGACGAGTGTTACCCGTCAGAGCCGCTGTTTGTACCAACACCTGGAGCCACCGAGGAGGATGatggtagaacaaacaaatgatgctttcgcacacatgctcagacacacacacacacacacacacacacacacacacacacacaaacacacataagtgaaacatagagcacattgtgatcttacggattctttgatcctgtactggctttcatcatcgttacagcagtagatatgttgacatgttaaaggtacagtgtgtagcattttatggactccatcagcagaaatggaatataatattcataaccgtgtttttgtaagtgtataataacaggaaactaTAcTTTCTACAATGGCCCAGAAGGGACAACCCAAACATCTCTGTCCCTAGAGCCTGAAGGCCACTGTACTAATGTCCTAATGTGGTGAGATTGTGGTAATGATGACCTGGGGTGTTCCACTCTGCGGCTCATggggtattcagtcggttgcaatgtgcaaccacaccactagatatcaccaaatcctacacactgtccttttcctagatatcaccaaatcctacactgtccttttccaagatatcaccaaatcctacacactgtccttttcctagatatcaccaaatcctacacactgtccttttcAGATAATTAGAAAAAGACACAAGACAAACTATTTTACGCTATTTTACGCTTTTAAAATTCAATGTCTGTCTGTCTCGGTGTTGCAgGTGTGCTGCTGAGCATTGTGGTGAAGCCGGGTGCCGAGAGACCAGGCTTCCTGCTGGTGCTGGACGCCATGAAACTGACCGAGCTGGCCAGGGCCAAGGTCAACGCCATCATCCCGGTGACCTTCCACGGCATTTATAAACCAATTTTCCCCTGCAGTGTGGAGCATCCTGCTGCAGGCTACAAGAAGATCTTTGAGACGGTGGAGGAGCTGAACGAACCTCTACCTGCTGAGATCAGTGGTGTTATACCTTCATGGCTTGGCGGCAGTCTTCTCAGGATGGGTCCAGGTCTTTTCGAGGTGGGTGGTGAACCTTACTACCACCTGTTTGATGGACAAGCTCTCATGCACAAGTTTGACCTGAAGAACGGTCAGGTGACCTACTACAGGAAGTTCATCAGGACGGATGCGTATgTCCGGGCCATGACGGAGAAGCGAGTGGTCCTCACTGAGTTTGGAACCGCGGCCTACCCAGACCCCTGCAAAAACATCTTCTCCAGATTCTTTACTTACTTCAGAGGAATCGAGGTGACTGATAACTGCCTTGTGAACATCTGTCCAATCGGTGAGGACTTCTACGCCGTCACAGAGACCAACTACATCACGAAGGTTGATCCTGATTCGCTGGAGACTTTAAAGAAGGTGGACCTGTGTAAGTACCTCTCTGTGAACGGGGTGACTGCCCACCCCCACACCGATGCAGATGGGACAGTCTATAACATCGGAAATTGCTTTGGCAAGAACATGAGTCTGGCTTACAACATCGTCAAGATCCCGCCTGCTCAGAAAGATAAGTCTGATCCCCTGGAGAAATCCCAGGTGCTCGTTCAGCTGCCCAGCAGTTCGAGGTTGAAACCCTCCTACGTCCACAGTTTTGGTATGACAGAGAACCATTTTGTGTTTGTGGAGCAGCCGGTGAAGATCAACCTGTTCAAGTTCCTGTCGGCTTGGAGCGTCAGAGGAGCCACATACATGGACTGCTTTGAATCCAACGACAGCATGGGGACATGGTTCCACCTGGCCACTAAGGACCCAGCATATTACCTGAGCAGCCACAAaTTCAGAACGTCAGCTTTCAATATCTTTCACCACATTAACGCCTACGAGGAGCAGGGCTTCATCGTGGTCGACCTCTGCACGTGGAAGGGTTACGACTTTGTGTATAACTACCTGTAtCTGGCCAACATAAAGGAGGAGTGGGAGGAGGTGAAGAAAGCAGCGATGAGAGCTCCCCAGCCGGAGGTCAGGCGATacgttctgccactggatatacacaggGAAGAGCAGGGGAAGAATCTGGTGTCcCTGTCCTACACTACAGCTACTGCGGTTCTTCGCAGTGACGGCACTGTCTGGCTCGAACCtgaagtcctcttttctggaccaagacaggCCTTTGAGTTCCCACAGATTAACTACTCTCTGTGTAGTGGGAAGAAGTATTCCTTCGCCTACGGTCTCGGGCTCAACCACTTCATTCCTGACAGGATAGTCAAGCTGAACGTACAGACCAAAGAGACCCTGGTGTGGCAGGAAGACGAGTGTTACCCGTCAGAGCCGCTGTTTGTACCAACACCTGGAGCCACCGAGGAGGATGatgGTGTGCTGCTGAGCATTGTGGTGAAGCCGGGTGCCGAGAGACCAGGCTTCCTGCTGGTGCTGGACGCCATGAAACTGACCGAGCTGGCCAGGGCCAAGGTCAACGCCATCATCCCGGTGACCTTCCACGGCATTTATAAACCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004294	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0042574	Biological Process	retinal metabolic process	Interproscan
GO:0050251	Molecular Function	retinol isomerase activity	Interproscan
GO:0052885	Molecular Function	all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity	Interproscan
GO:1901827	Biological Process	zeaxanthin biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-