Gene detail

Detailed information of HS03806 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03806	ODD-SKIPPED - RELATED	chr5	7114472	7117374	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03806

CTGGGTTcagagcagcagcagccgccgccgcagcagcaTCCACCCGCGGGCTCTCCTCTCCACAGCTGGATTATATTTCTCGGCGCTTCGTCCGCTCCCGGCTCAGAGATGCCGCGCTCCTTCATGGTGAAGAGCAAGAAGGCGCACAGTTACCACCAGCCCCGCAGTTTGGAGGAGAACTACAGTCGGCTGGACACGCTACTAGCGCATATTTGCTCAGGTGTGTGCGAACTGATTCAGTTTTGTTGTTTTTTTATTATCTTTACTGCTTcAAATATGTCATCCGATGTTCCATTTCACTTCTTTTTTTAAATGCATGGCAACGATTGTAGAGGTCTTGCAGGAGAATTAAAAGATGACACACACAAAGGGTTGTTGCAACTATACTGATGGCAAGTCACTGTTTTTTTTACAGGTTAAAAGGACTGTTAAAAATGTCGAGTAGTTTATTGAAATAAaTATTAAATAGTTTTCTGAAAAAAATGCGTGAACAAAAATCAAAGTGTAAATTCTGATGTTTATCCAGCTGGTCGATTTTGAGACTCCACGCTAATATAAAACAGTGATAAAGCTCTATATTCACTCTTTAATcACTGTTTTAAGAAAAAAGTACAATATATTAGGTTATATTGTCTTAACCATTTGGTAATTTTGCACACCCAATAATCCTGTTCCAAATAAAATATTATCGTGCCATCCTTTTAATCCAAGTGACCTTTATTATGATTTATAATATTGTTAAACCTCCAATATTATAACCGAAGATCACAGATGTGCAGTAATGTTTAAAAGcccccgcccccccccccccccTCGTCACGATGCTGACTGCTTGTCCTCCCTCAGAAGCGGATCAGCTCCAAGACGACTCCGACGTGTCGGTGGACCAGTACGGCCTCTCTCCGGACTCCCACCTGGCCGACGCCGCAGATTTCTCCCCAAAGTCTCCGCTGAGCTGCGCCAACAGCaTGTGCGGCCGCTCCCCGCTCTACGAGGACTTCTGGAGGCCTCCGTCCCCCTCTGCGTCCCCGGGTATACGCACCGCCAGCACACGGGCACATCACATCCTCATTATTATTATTTTACATTTTAATACTTGTTTGTTGAATTCGGATGATCACAGATCAGTTCCCTTAGAAAAAGTACATGGGGCCTTTGGTCTGTCACATTGTATATGGTCCTTATGGAACTATAGGCTGCTTTTAGGGTTTGATTGTTTATTTATAGTTGTATTTAAGCCTAAATATCATTATTATACAGCATACATCTGATATTATATCTAAACGGGATCGCCATCTGTGAATTCTCTGGAAGAACATTGGACACCTCTGCTCCCGGAAACGCTTTTTCATCTCTCCTCTTGTTCCTCTCTCCAGTGGATTCTGAGAAATCTCTCTCCCCGCTGGTGGACGAGACGCAGCCCTTCGCCATTCCCTTCCGGCCGTATGCcTGGAGCAGCTACCCGGGGCCGGGGCCGGGGCCCCTGGTGCAGCCGAGCCCCCACCCGGGCATGGAGGTGGAAAGGGGTCCGGCGGCGTTGTCCTTATACGGGGACCGGAGCACCCACTCGGCCCTGTACGCAGACCGGGCCCTGGTCGAGGAGACGTACGGGGACTACAGGAGGCACGCTGCgGCGCTGCGGTTCCCCGAGGGGGGCCTGCTGCACGGAAAGGGCCACACCGCGAAGGCCCCGTCGGACCTGCTGTGCTCCAGTCTGATCCTCAATGGCGCGTTCAAGTGCACCAAGTGCAGTAAGGTGAGGGTGGAGGCGCaTGTTCTGCtTTGTGGGGATACATACATGGATGGGTAAcGCaGCTTATGAACCGCCAGTGCTGGTCCTCTAAAATAAAAATAATATTTATATTGGTTTACGtAAAAAAAAaTGGCGCTGCTTAAAAGAATGACATGATGCAAATGGTTGACTTTAAGACACACATGCTGACCTCTGACCTCAACGACAGGATTATTTAAAAGATATTTCATATCTGGAACTGGCCACAGGTTCAACTTAAACTCTCTTGTTATTTTGCAGGTGTTTTCTACTCCGCAcgggttggaggtgcacgtgcgcagatcgcacagcggcatcaggccgtttgcgtgcgaaatctgcggcaaaacttTCGGACACGGAGTCAGCCTGGAACAACACAAAGCCGTGCACTCTCAGGTGACCTCTCACACACAAATACACCCCCCAACCCCCCCCCCCCcTCACACACACTTTGAACCGCTTCCTGCAGCTCGCGCGCACCCCCTCCTCGTGTTGTTGTCAGTCTGCTTTTTCGGTCAGGATGGGCACGCTGACTCGAAATCATGACTAACCAACGCCCCCCCCCCtTCATGCGTCACCTTTCAGGAAAGGAGTTTCGACTGCAAGATATGCAGTAAAAGCTTCAAGAGGTCGTCCACTCTGTCGACGCACCTGCTCATCCACTCCGACACGAGGCCGTACCCCTGCCAGTACTGCGGGAAGAGGTTCCACCAGAAGTCCGACATGAAGAAACACACGTTCATCCACACAGGCAAGTGGAGAAGAACCCATAATGCAACACATGTAGTCACTATAGTGTTTATGTTTTCTTTACGCTTAAAAaATCTGTGCGTCATTTGCGCGTAAAGTCCCAGATTTTCCCGATGCACGACAAATGACGACATCATTTAGCTTCAATGAAATATACAAAAAAAGAGCCCCTTGTTTACATGTTTCCTAATTGTGTTGTGcaggtgagaagccacataaatgccaggtgtgcggcaagtcgttcagccagagctccaacctcatcacgcacagccggaagcacacgggatacaagcccttcggctgcgacctgtgcggcaaaggcttccagaggaaagtggacctgaggaggcacaaagagacgcagcacgggcTGAAGCTGGGTTcagagcagcagcagccgccgccgcagcagcaTCCACCCGCGGGCTCTCCTCTCCACAGCTGGATTATATTTCTCGGCGCTTCGTCCGCTCCCGGCTCAGAGATGCCGCGCTCCTTCATGGTGAAGAGCAAGAAGGCGCACAGTTACCACCAGCCCCGCAGTTTGGAGGAGAACTACAGTCGGCTGGACACGCTACTAGCGCATATTTGCTCAGAAGCGGATCAGCTCCAAGACGACTCCGACGTGTCGGTGGACCAGTACGGCCTCTCTCCGGACTCCCACCTGGCCGACGCCGCAGATTTCTCCCCAAAGTCTCCGCTGAGCTGCGCCAACAGCaTGTGCGGCCGCTCCCCGCTCTACGAGGACTTCTGGAGGCCTCCGTCCCCCTCTGCGTCCCCGGTGGATTCTGAGAAATCTCTCTCCCCGCTGGTGGACGAGACGCAGCCCTTCGCCATTCCCTTCCGGCCGTATGCcTGGAGCAGCTACCCGGGGCCGGGGCCGGGGCCCCTGGTGCAGCCGAGCCCCCACCCGGGCATGGAGGTGGAAAGGGGTCCGGCGGCGTTGTCCTTATACGGGGACCGGAGCACCCACTCGGCCCTGTACGCAGACCGGGCCCTGGTCGAGGAGACGTACGGGGACTACAGGAGGCACGCTGCgGCGCTGCGGTTCCCCGAGGGGGGCCTGCTGCACGGAAAGGGCCACACCGCGAAGGCCCCGTCGGACCTGCTGTGCTCCAGTCTGATCCTCAATGGCGCGTTCAAGTGCACCAAGTGCAGTAAGGTGTTTTCTACTCCGCAcgggttggaggtgcacgtgcgcagatcgcacagcggcatcaggccgtttgcgtgcgaaatctgcggcaaaacttTCGGACACGGAGTCAGCCTGGAACAACACAAAGCCGTGCACTCTCAGGAAAGGAGTTTCGACTGCAAGATATGCAGTAAAAGCTTCAAGAGGTCGTCCACTCTGTCGACGCACCTGCTCATCCACTCCGACACGAGGCCGTACCCCTGCCAGTACTGCGGGAAGAGGTTCCACCAGAAGTCCGACATGAAGAAACACACGTTCATCCACACAGgtgagaagccacataaatgccaggtgtgcggcaagtcgttcagccagagctccaacctcatcacgcacagccggaagcacacgggatacaagcccttcggctgcgacctgtgcggcaaaggcttccagaggaaagtggacctgaggaggcacaaagagacgcagcacgggcTGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050717	Family	C2H2-type Zinc-Finger Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14196	ODD-SKIPPED - RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001655	Biological Process	urogenital system development	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009790	Biological Process	embryo development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-