Detailed information of HS03617 in Pseudoliparis swirei Gene info
Gene IDAnnotationChromosomeStartEndStrand
HS03617THROMBOSPONDINchr5975291996969-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF11598COMPCartilage oligomeric matrix proteinFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR024665DomainThrombospondin/cartilage oligomeric matrix protein, coiled-coil domainInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR039081DomainThrombospondin-5, coiled coil domainInterproscan
IPR046970Homologous_superfamilyThrombospondin/cartilage oligomeric matrix protein, coiled-coil domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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