Gene detail

Detailed information of HS03569 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03569	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	chr4	34495786	34503311	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03569

ATGGCATGCAGCGCGTGGAGGTCAATGGTGGGTAAAGATGATCGATACCGCGCTGATCAGCTCCCACTAACCGGCCGGAGCAGCTTCACCGGGCAGGGCGGAGGCAGCCTGCGGGGGACGGGGCGTGTCCGCCGGCGTCAGGCGTTAGCATGGCAGCTAGCTGCGTGTGCTTCAGCCGGAGCTAGCATGCTAACTGCGTTCACTGATCGATCCTCCGCGTGCATGCTGGGTAATATGAGTGAAAAACACCTCGAAAAGACCAGCCTCGTGACGTCACCGTAAAGTATCGATCTGCTGTAACGTTATTGATCTGAAGGAGATGAGTCATAAACCAGGAAGACGATCAGAGTTCCATCAGCACGTGACCCGAtGATGACGTAGTCATTAAGTACCGTCATAAGAGGTGTTGTTGAGGTATTGATCTGTGTATTGATCTGATGAAGGTGAAGATGTTCATGTTGTTGACCTTCATGTCCTCAGGTGGTGAAGGCCAGGAGGCCCAGCCTGGGCTCCTTCTCCAGAGGGGTGAGGTCATAGGTcacacacacagtgtcacacacagtgtcacacacagtgtcacacactgtcacacacacacagtgtcactcacacacacacacacacagtgtcacacacacacacacacacacacacacagtgtcactcacacacacacacacagtgtcactcacacacacacacacacagtgtcacacacacacacacacacagtgtcacacacacacacacacacagtgtcacacacacacacacacagtgtcttcacacacacacacacacacagtgtcacacacacacacacacagtgtcttcacacacacacacacagtgtcacacacacacacacacacacacacagtgtcactcacacacacacacagtgtcactcacacacacacacacagtgtcacacacacacacacacagtgtcacacacagtgtcacacacacacacacacacacacacagtgtcactcacacacacacacacacacacacagtgtcactcacacacacacacacagtgtcactcacacacacacacacacagtgtcactcacacacacacacagtgtcacacacacacacacactgtcacacacacagtgtcactcacacacacacagtgtctgtcacacacacactgtcacacacagtcacacacacacacagtgtcactcacacacacacacacagtgtcacacacacacacacagtgtcacacacacacacagtgtcactcacacacacacagtgtcacacacacagtgtgtcacacacagtcacacacacacagtgtcactcacacacacacacacagtgtcacacacacacacacacagtgtcacacacagtgtcacacacacagtgtgtcacacacacagtgtcacacacagtgtcacacacacagtgtcacacacagtgtcagtgtcacacactgtcacacacagtgtcagtgtcacagtgtcacacagtgtcacacacacacagtgtcacacacacacagtgtcacacacacagtgtcacacacacacacacacacagtgtcactcacacacacacagtgtctgtcacacacacacactgtcacacacacagtgtcacacacagtcacacacacacagtgtctgtcacacacacacagtgtcacacacacacagtgtcacacacacacacagtgtgtcacacacacacacacagtgtcacacacacacagtgtctgtcacacacacacactgtcacacacacagtgtcactcacacacatacacacacagtgtctgtcacacacacacactgtcacacacacagtgtctgtcacacacacactgtcacacacacacagtgtcacacacacacacaggaagtgatcataaacagttgtcacacacacccagtatggtcaaatgactagctttatttttctcttttgctctacaaaaaagcctctcaggaccctaagctccgcctacttaaattttcggccattttgaattctgtgaaacacatcagaggcgtttgctccgacatgcggggtccaattcataccaaacctattggagataatgattatggcagctatatcatctaagatctatcatcttttttcaaatatatcattgtggtaaggatctatggcccaacgaacattttaggggcgtgtcctgtttggtaatgctcataacttcaacactattgggaaaaaaaaataacagactttcaggatatgtgcagaatggagcctgaaacattcacagcaaatttcgtgcaatttgaaccgtagggggcgctacaataattcaccaaagttggccgtttttggcgttttttgcttgatttggccatttccaacttttacactgagaaggatttctaccacaaaacgccaacagaatcggctcaaaataagttttatagaatctcgacttgaacactgtgaaaaaaacggacttttcgtcggtaggaaattgacgtttttttactgccaataattgtgtactttctgtgatttctttatgttaaaaactattgcttaaaccaggggtgtccaaagtccggcccgcgggccaatggcggcccgcggtcagatttcatacggcccgcgacatcggtcatataatgtgttatttgtggcccgccagatctgtcagaataaataaatcataaacacttgaaagacgtaattcctccattctaatgtatctggctctgcgtggcgtgaacccttctccaaacctatttgccatggcgacggcaaaaaaaaggagaaaagttgagtgagggccgccgctttcaggagcggtgggaattacgagtgtttcccctcccatgagaacagggtgggggtccgccccactgaaatgttctctatagcgccagattacaacataagtaatgtcaggttgttttattcaactaaacggtcgtatattattgatcgtatcgacacagcggcatgtcatttctgtctctacgtggtggcgttcacacttctcctggctctcggtatcgcggcggagctccgcccccatgcgcacagacaggtgcgcacagacaggtgagcgcgctccaaccagccggcagagagcgtccaatatgtcgcgggaacagcaaaccgacacctctgcgttcccacggtggtgaagacacgtcgtctcagagtcgctctctgctccgggttcaagagcagagaccaggtggggcgcgagggggaatgcagactcttttatttcaagaccttgtttgagaacttcacatattacaaactacacggacataaaactaagtcattaataaataaagagcgaaatgcctgtcgcctactttcgtgtaaatgtgtacgttacagcgctaaccggttacgctgcgcatgcgcgacagactagattattggcgacttgccaggtgttacctctcagcgttccagctgttgcccttcaaaacaagagctcaacattgagctttatggagagtggccgtatcaagcctgcaaccccgttttaaaaagaggtgaagtggaaagcccattttatcacacatagaaaaaaacgtaatgactcagacatatctgcacttgttttgtttttcaaaggttgcgcgttattgttattttgaaaagatatgcagtgtcactaacactcagtaaactctttatgcccaaatatttgatcttattttgtttcatttttcacaggttgcactttattgatattatcttgaaaaggtattcagtgcaaaacaggttaattgcaacgttatgtaactcatagaaatgtaaggtattctacatacagctttttcattgttatctgactgaatgaaaggcagacttggttatattatatgtggttacattgtcatttaaaaaataaaagtaatcgtgacagtaaaaataaattgttttataacagtgtattttcatgtaacttttgtggtttaaaaaatgtctaaaggaactattggccccgggcatctttactttatcacaattggccctagttgcaaaaagtttggacacccctggcttaaactcatccaatacttccccaaaaaatcatgtgtgatgccagtcaaggcctgaacacattcacacgaagaaacaagcacatttcttccaggaacacctattgaacacctattgaaaagtaaaataaccataatttattcactttcacgataatgttaccccctacagctgatgcaattacatctaatcagtggtgcagagcaataggtgcttgccgagtgacacagagacctgtttttgattccagactaaggcaaagataatgttatcggggttttttctacacttcacttagacatatgatgcatggatatgttcacAGAcatgatcgattccaagacaagatagctttttttcatcacttttttttttttacattgaatttacatgacgtggtctacacttcacgtagggacacacgatgcatgaatatgttcacgtagttaaagcgccacctagtggctcaactggactttgtcgaatctgccccaaactctcgtttcaagtcgcggcccgagtcgagtccgaccggcgcgcccgcgtcctcggccgagcgggccggcgtcccgccggctcccccgaccggcgcagatgagcgaggacccgttcaacgctgcttgcagctttaattgtctttttttattattCTATCATTTTTACAAATATTATTTCATTCTAATAATCGTATTACTTGTAATATTATTTAGaTTGTGGTCtCACCTGTGccccccccccccccccccccccccAGATGCAGACCGTCACACTGATTCCTGGTGACGGCATCGGACCCGAGATATCCTCTGCTGTCGTGAAGATCTTTGATGCCGCCAAGGTCggtgccccccccccccaggtgccccccccccccaccccGAGACTAACCCGGTCCCCCTGCAGGCCCCGGTCTGCTGGGAGGAGAGGAACGTCACGGCCATCAAGGGGCCCGGGGGCCGCTGGATGATCCCCCCCGACGCCAAGGAGTCCATGGACCGCAGCAAGATCGGCCTGAAGGGTGAGGAACAGAGGGCATTCTGGGTAATAGAGCCAGAGTCTCCTGGGCTGAGCTCAAGTCTCTGGTGTCTCCTCCAGGACCTCTGAAGACCCCCATCGCCGCGGGTCACCCCTCCATGAACCTGCTGCTGAGGAAGACCTTTGACCTCTACGCCAACGTGCGACCCTGCATCTCCATCGAGGGCTACAAGACGCCGTACACCGACGTCAACCTGGTGACCATCCGGGAGAACACGGAGGGCGAgtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcagcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggtacagcggcatcgaacacgtggtacgtgtctcttaaagggccggtacagcggcatcgaacacgtggtacgtgtctcttaaagggccggtacagcggcatcgaacacgtggtgcgtgtctcttaaagggccggCGCACCAACAGGAGGCCTGTGGACGGAAaacgttagctagtaacgttagctagCTTAGTTTAAACActgactggttgtttacaaagtcacatggtcagagaccaggaggtcacgtcttCATtccctggcccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccctccttcctgtccctggtccttccttcctgtccctggtccctccttcctgtccctggcccctccttcctgtcccAGATCGTGGAGGGCGTGGTCCAGAGCATCAAGCTGATCACGGAGGACGCCAGCAGACGCATCGCTGAGTACGCCTTCGAGTACGCCCGCAACAACCAGAGGAGCAGCGTGACGGCGGTGCACAAGGCCAACATCATGTGAgcctgtctgtctgcctgtctgtctgtctgtcccctcctgtgtgatgaatgctctctacctgtctctctctctCAGGAGGATGTCAGACGGGCTGTTCCTCAGAAAGTGTCGTGAAGTGGCCGAAACCTACAAAGACATCAAGTTCACGGAGATGTACCTGGACACGGTGtgtctcaacgtgagtagaggctccgcccctttgtctcaacgtgagtagaggctccgcccctttgtctcaatgtgagtagaggctccgccccCTTGAACTGTTTCTCTGACCTCCAGATGGTTCAGGATCCGACCCAGTTTGACGTCCTGGTGATGCCCAACCTGTACGGAGACATCCTCAGGTGTgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgTTGACCTGCTCTCTGTTCCAGTGACCTCTGTGCTGGTCTCATTGGAGGACTCGGCGTGACGCCCAGCGGGAATATCGGCGCCAACGGAGTCGCCATCTTTGAATCGGTTCGTTCAGTTTTATAAAACCTTCCAAAGAGtctgatggggtctgagcctctgatggggtctgagcctctgatggggtctgagcctctgatggggtctgGGGGTCCCGCAGGTCCACGGCACCGCCCCTGACATCGCCGGTCTGGACCTGGCCAACCCGACCGCTCTGCTGCTGAGCGCCGTCATGATGCTGCGCCACATGGGCCACCACGAGACCGCCAGCCGCATCCAGACCGCCTGCTTCGACTCCATCAGGGACAAGAAGGTGGGCTGAGGGTCCAGCGGGGGCCTCGTATTGTGTTGATTATACATCTTGTATTTATTGTCACCTCTCACCTCTGTGTCTCAGGTGCTCACGGGAGATCTGGGAGGAAGCTCCAAGTGTTCAGAGTTCACCGATGACATCTGCCGccgggtccaggacctggacATGGCATGCAGCGCGTGGAGGTCAATGGTGGTGAAGGCCAGGAGGCCCAGCCTGGGCTCCTTCTCCAGAGGGATGCAGACCGTCACACTGATTCCTGGTGACGGCATCGGACCCGAGATATCCTCTGCTGTCGTGAAGATCTTTGATGCCGCCAAGGCCCCGGTCTGCTGGGAGGAGAGGAACGTCACGGCCATCAAGGGGCCCGGGGGCCGCTGGATGATCCCCCCCGACGCCAAGGAGTCCATGGACCGCAGCAAGATCGGCCTGAAGGGACCTCTGAAGACCCCCATCGCCGCGGGTCACCCCTCCATGAACCTGCTGCTGAGGAAGACCTTTGACCTCTACGCCAACGTGCGACCCTGCATCTCCATCGAGGGCTACAAGACGCCGTACACCGACGTCAACCTGGTGACCATCCGGGAGAACACGGAGGGCGAgtacagcggcatcgaacacgtgATCGTGGAGGGCGTGGTCCAGAGCATCAAGCTGATCACGGAGGACGCCAGCAGACGCATCGCTGAGTACGCCTTCGAGTACGCCCGCAACAACCAGAGGAGCAGCGTGACGGCGGTGCACAAGGCCAACATCATGAGGATGTCAGACGGGCTGTTCCTCAGAAAGTGTCGTGAAGTGGCCGAAACCTACAAAGACATCAAGTTCACGGAGATGTACCTGGACACGGTGtgtctcaacATGGTTCAGGATCCGACCCAGTTTGACGTCCTGGTGATGCCCAACCTGTACGGAGACATCCTCAGTGACCTCTGTGCTGGTCTCATTGGAGGACTCGGCGTGACGCCCAGCGGGAATATCGGCGCCAACGGAGTCGCCATCTTTGAATCGGTCCACGGCACCGCCCCTGACATCGCCGGTCTGGACCTGGCCAACCCGACCGCTCTGCTGCTGAGCGCCGTCATGATGCTGCGCCACATGGGCCACCACGAGACCGCCAGCCGCATCCAGACCGCCTGCTTCGACTCCATCAGGGACAAGAAGGTGCTCACGGGAGATCTGGGAGGAAGCTCCAAGTGTTCAGAGTTCACCGATGACATCTGCCGccgggtccaggacctggac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00180	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004434	Family	Isocitrate dehydrogenase NAD-dependent	Interproscan
IPR019818	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan
IPR024084	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11835	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004449	Molecular Function	isocitrate dehydrogenase (NAD+) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006102	Biological Process	isocitrate metabolic process	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-