Gene detail

Detailed information of HS03520 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03520	FORKHEAD BOX PROTEIN R1	chr4	33216171	33219576	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03520

ATGAGCTTCAGGCTGAAGACCGGAGCCGGGCTCCTGGACCTGCACTGCTCCCTGGGCCTGACGGACTGGGACATGGACACGGAGCTGAAGCTCAGCACCACCACGGACCAGCTGCCCCCCGGTGAGGGACAGCCCCACTCACCACaCCTCCTGCTGGGAGGATGGGGTTTCACTGTGTGTGTGTGTGTCAGATGAGCAGCTGGGTGACCCCCACGTGGTCCAGAGCTCCGCTCGGACCTCCAGAAGGAAGGAGGACTTCATCTGGTCCGAGCAGGCTTCAGGTGAGACCTTTCTGGATCTGAATACCTCCTCCAGAGCTCCTCTGTGACTCCGCGCCTCCTCCAGACTCCTCGGTGAAGCCCAGCTTGTGGCTGCTGGTGAACCCGAGCATCGCCTGCCCGCTGCGGTACCAAGAACCCCCGGCTGGGGGGGTCCAACCGGCCCAGAAGTCCCCCGCAGAGACCCGGAGGCTCCTCGCCACGGAGGCCCACGTGTCCGGCCTCTGCGGCGCTCCTCTGGGGGGGGAGGGGCTGCCCCCCCCGTACCCGGTACGTTGTTGTGGTCCAACCGGTCTTTAGGGTCATGGATGTGAGGACCGTGGTTCTTAAACCTGGTTTGGTGGATACGGTGAGATCCACAAAGCTCCTTGGTCCCGCCTTCCTTCAGATGCTTTGTGCTGATTGGCTGTGAGACACAGGGGGAGGGGCTTGTTGCCGTTTTAAAATGTTTTAAACTTTTAAATGTTTGTCTTTTAGATCCTGGACGAAGACGTCTCGTGTCGCCCAGCGAAGAACGGACTGAAGGGAAGAACCCCGACGTCCCGGGTGAGGCCCGGTCCGGTTCCTCTAAAATCACCTGGAAACTATTTAATTACTTAATATCACAAAGTTATCGACCAGTTTTTATGTTCAATTCTACCTGGTTATGTACATTTATTTCCAAACTTTAAAGATTCTGTGAACGTTTAACTGGtcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatatacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctcttgagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctcttgagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctgtagacctcagtgtagacctggtcctctgtagacctcagtgtagtcctggtcctctagagacctccgtgtattcctggtcctctagagacctcagtgtaatcctggtcctctgtagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctagacctcagtctagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctatagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctatatacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctacagacctcagtgtagtcctggtcctctgtagacctcagtgtagtcctggtcctctagagacctcagtgtagtcctggtcctctagagacctcagtgtagtcTAATAGCAGAACTTCTCCTCTCTGGGAGCCAACACCACACTGCTGGAGACccagaaccaacactaccactttagtccacagggggcgccagaaccaacactaccactttagtccacagggggcagcagaaccaacgtgaggggaaagttcctcctagaatctttTAATTGAGGTGTTTGTTAGTTCCACGTTATCAATGAGATCTTTTGTAAATGTTTATATTTGTCTTATAAGTGGAGTAAATCCCTCTCCGTCCTCAGGCCCAGAAGGCCCTGAAGCCCGGGTCCTGGCCCCGGCCCCCTGTGAACTACTGCATCCTCATCGCCTTGGCGCTGAAGAGCAGCCTCACCGGGAGCCTGAAGGTCCAGCAGATCTACAACTTCACCAGGTGAGCGTCGACCGTCTGCTGACCAGTCCAGCGGCTCATGTGACTCTTATGATCTGTATTACCCCCCCGCCCCCCCACAGGGAGCACTTCCCCTTCTTCCAGACCGCTCCGGACGGCTGGAAGAACACCATCCGACACAACCTGTGCTTCAACAGCAGCTTCCGGAAGACCTGCAACCAGCTGTGCCGCGACGGCAAGAGGAAGTCGTGCTTCTGGCACCTGACGCTGGACGGCCACCGGCGGCTCCGGGACGAGGTGCGCACGCTGGCCGGCGAGGCGTTCGGGCTCCTGGAGCGCAGCATGGCCCGGCCAGGTGAGCCGACGCCTGGGCCCGGGGAGCGTTTACGACGTCTGTTCATCTTTAACGGTTTTCTTTGTTTCCAGATGTGATTCAGAGTCTTTTCGCCCTGGGAATGAGCTTCAGGCTGAAGACCGGAGCCGGGCTCCTGGACCTGCACTGCTCCCTGGGCCTGACGGACTGGGACATGGACACGGAGCTGAAGCTCAGCACCACCACGGACCAGCTGCCCCCCGATGAGCAGCTGGGTGACCCCCACGTGGTCCAGAGCTCCGCTCGGACCTCCAGAAGGAAGGAGGACTTCATCTGGTCCGAGCAGGCTTCAGACTCCTCGGTGAAGCCCAGCTTGTGGCTGCTGGTGAACCCGAGCATCGCCTGCCCGCTGCGGTACCAAGAACCCCCGGCTGGGGGGGTCCAACCGGCCCAGAAGTCCCCCGCAGAGACCCGGAGGCTCCTCGCCACGGAGGCCCACGTGTCCGGCCTCTGCGGCGCTCCTCTGGGGGGGGAGGGGCTGCCCCCCCCGTACCCGATCCTGGACGAAGACGTCTCGTGTCGCCCAGCGAAGAACGGACTGAAGGGAAGAACCCCGACGTCCCGGggggcagcagaaccaacTCCTCAGGCCCAGAAGGCCCTGAAGCCCGGGTCCTGGCCCCGGCCCCCTGTGAACTACTGCATCCTCATCGCCTTGGCGCTGAAGAGCAGCCTCACCGGGAGCCTGAAGGTCCAGCAGATCTACAACTTCACCAGGGAGCACTTCCCCTTCTTCCAGACCGCTCCGGACGGCTGGAAGAACACCATCCGACACAACCTGTGCTTCAACAGCAGCTTCCGGAAGACCTGCAACCAGCTGTGCCGCGACGGCAAGAGGAAGTCGTGCTTCTGGCACCTGACGCTGGACGGCCACCGGCGGCTCCGGGACGAGGTGCGCACGCTGGCCGGCGAGGCGTTCGGGCTCCTGGAGCGCAGCATGGCCCGGCCAGATGTGATTCAGAGTCTTTTCGCCCTGGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766	Domain	Fork head domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR052328	Family	Forkhead box transcription regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46789	FORKHEAD BOX PROTEIN R1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-