Gene detail

Detailed information of HS03480 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03480	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	chr4	32457167	32460128	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03480

ATGAAATGGATGTTCAAAGAGGATCACTCCTTGGGTAAGGGAAGGAACGCACGTTTAATAAATCATGTAATATTGTATAACGTTAATTCCTCAATTTGGGAGCAGGGGGTGTGGTGGGGGGATTCATGAGGGCGTGGAGCTGCGTAAATCCTCCATAATAAGGTCGGCTCCACGGCCTGTGCTGCTGCGGGCTTATTGTCTCCTCGCGCTCCTCTGGGCTCGCTCATCTTTTAATGGAGTTAACATGAATATAAACGTTGTGTGTTGATGAGTCAGCACACAGACGGTGGTCGATGACACGGCACCGTGTCTCTGTCCGTGGCCCCCGGGCTGCAGATGGAGCCTCCCCGGGTCCGCATTGAGTTACAGTCCGCCGCCCCGGGGGATCGAACCCGCGTCTCCTCTATAAACGCGGTCCATCCCAGGTGCTTCCTCTCTATTATACTCCCAATCTGTTGTAAACACCGGAGGCCCGACGGGACCAGGAGGAAAGAAGTGCAGGCCTTGTTCCACCGCCACGTTTTAGGAGTTAATTTCATGAATTCAGATTTATTTGATCAATAAATCGACTAATTGTTGAAGATGAACGTCCTGATTGGCTTGTAGGTCCTAAAAGGGATTCCTTAAAACAGCACACATTGTCCAAAGTAGTTTAACATGCTAACATGAATTATTATTAAACATCTGACACTCCCTAAATAAGCTTTTATTTGCTCCATATGAAACTAAATCACATCTGCTGTTGTAATTATGAATATTATAATCCTAAAATGTTGTAAGATTCATGTTCTACCTTCACTTCCTGTTGACGGGCAAGCTGGTGGCAAGTGGTTGTTTATCAGACTTTAAAACTATAAATTGTAATCCTCACTTTACATTTGTATTAATTATTATATTATTAATGCCGTTGAGAAATAACATTTGCTTTAAATTAGTTTATTTCGTGTTAAAAGTGTAAAACTGGCATTTCTCCACCACGGTAGTTATTGTTGGTGTCAGTGTTGAGACTACATTACCCACAACCCCCTCTGCTTCCTGTgaggaggaggaggaggaggaggagTTTAACCTGGTGTTAAACACGGTGCAACAGTGAAGGAAAGTATTTCACTTAAAAAAATATAAAAGTTAACAATATAATAAACTACAGTAAAATAAGAATGTTATTAAAATGTTTACGTGTATATTTAAAGTGATATATAAATGTCTGTAATTGATCGCACGGGTACAAATAAATTAGATGGCGTTAATATATTATTTAAATAACTTTCTAATTATCAGAAGTCATTTTTCTGTCGACTCTCAAATCTTTTTAAACAGCTTTAGTAGCATAACATAATGTAACTCTACATTTAATTAAATTAACTCAAGTTTAGTCTTTTAATATTTTTgTTGTTTGgGTTCATTTTAAATTCCATAATTATAATTTTACTTTTTAAGAAGAGCCCATCTTTGACTCTTTGGGTAAGACTCACATTTTAATAATTAATGTTGATTTAAAGGAaCTGAAGTAAGAGAACTCGGGGGAATTAAATAAGAAAATAGACATCAAGTAAATCTATGTAACAATAATTGTTCACGGCTTTCTGCAGGAATGACATCATCAAAGAGCGACTGGCTGGTGTTTTATTGATGATGCACTTGATTACCTCCTGCAGCCGCTTGTGAATGTTGAATATTGATCTCTGTCCACCATAAACATGCATTCCTGTGACACGACCCACGTCACTAATGAAACGCTGTGTTCTGGTTATTTTGTCCACCAGAACATCGATGCATAGAATCGGCCAAAATCCGCAACAAGTACCCTGACCGCGTCCCGGTGAGTGAGACCTCTGTTCCCGAGCCGCTTTGCGCTTTGCGGCGTGTAACCACGGCGACGCGTGTCCCCGCCAGGTGATCGTGGAGAAGGTgTCgGGCTCtCAGATCGTGGACATCGACAAGAGGAAGTACCTgGTGCCCTCtGACATCACcGTGGCCCAGTTCATGTGGATCATCAGGAAGCGCATCCAGCTGCCCTCGGAGAAGGCCATCTTCCTGTTtGTGGACAAGACGGTGCCCCAGTCCAGGTCAGGGGGGTCGGGGGTTGGACCGGTATAGAAAAATGATGCAATTCTGAATGATATTTaTATCTTTTTTAACGGTGATTTTTGCATTACTTTGACGTCCTCTCACGTCCACAatatatatatatattttaaatacatatttattaatatTTTAGGTAGTTTAATACATTTAATTTTCgAACTCTTATAAATTGTGTGTTGAGAATATAAATTGAAAGGAATACCTcAAAAAAAaTCCCCTCTCAAAAAGGTAGATTTGATGCTTTTCATCTGAATATCTTTGGGATTTAAACTGTGCGTACATGTCGTTGGGCTGAAGTTATGACGGGCATTTAAAAAatatatatatttatttttaatctctctatatatagatttatagattttttaaatttatatgtgtatatatatataattattttagtctatatagatttttatttatatatatatatatataagaaatacatgtgtgtgtatatataGGAAGGTCTGGTTTAGAATCCTGAAGGTCAAACctgccctctctgtggctttcagctccatccccattggttgatcctgaagagacacgcctttaaaaACACTAATGCACAGTTTCAATACAGTTCATTTAAAAAAAGTAATAAAAGTGTTTTTGTCCTTTAATCGGAATATCAACGAATATTAGTGGAATATTCCTTTACATTAGTCACGCAAACGGCTTATTGGGGATATTTTCAGAATAAGAGCGCAGGCCgtgatgtgtatgtgtatatatatagttatgtatgtatatataAAATGAGTGTTCTCCCCGTTTCAGCATCACGATGGGGCAGCTGTACGAGAAGGAGAAGGACGAGGACGGCTTTTTATACGTGGCCTTCAGCGGCGAGAACACCTTTGGTTTGATGAAATGGATGTTCAAAGAGGATCACTCCTTGGAACATCGATGCATAGAATCGGCCAAAATCCGCAACAAGTACCCTGACCGCGTCCCGGTGATCGTGGAGAAGGTgTCgGGCTCtCAGATCGTGGACATCGACAAGAGGAAGTACCTgGTGCCCTCtGACATCACcGTGGCCCAGTTCATGTGGATCATCAGGAAGCGCATCCAGCTGCCCTCGGAGAAGGCCATCTTCCTGTTtGTGGACAAGACGGTGCCCCAGTCCAGCATCACGATGGGGCAGCTGTACGAGAAGGAGAAGGACGAGGACGGCTTTTTATACGTGGCCTTCAGCGGCGAGAACACCTTTGGTTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02991	ATG8	Autophagy protein Atg8 ubiquitin like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004241	Family	Autophagy protein Atg8 ubiquitin-like	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000421	Cellular Component	autophagosome membrane	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776	Cellular Component	autophagosome	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006995	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0016236	Biological Process	macroautophagy	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-