Gene detail

Detailed information of HS03441 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03441	ANTIGEN BSP, PUTATIVE-RELATED	chr4	31143992	31145881	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03441

ATGCTGAACAAAATGATCTCCTCCCTCCAGCGCCAGACAATGAGAGGTCGTAGGCTGAAGGGGGTGCTGTCCAACCCCCTCTTTGTGCTGCTCTTGACCCTCCAGATCTTGGTGGTGGCTGGGCTGGTCCGCGCTCAGACCTGCCCCTCCGTCTGCTCATGCAGCAACCAGTTCAGCAAAGTCATATGCACCCGCCGGAGCCTACGGGACGTCCCGGACGGCATCTCCACCAACACTCGCTACCTGAACCTCCAGGACAACCTCATCCAGGTCATCAAGGTGGACAGTTTCAAACACCTGCGCCATCTGGAGATCCTTCAGCTGAGCAAGAACCACATCCGCAACATTGAAATCGGCGCCTTCAATGGACTCGCCAGTCTCAACACCTTGGAGCTCTTCGATAATCGGCTTACGATAATCCCCAACGGCGCATTTGAGTACTTGTCCAAGCTAAAGGAATTATGGCTGCGGAACAACCCCATCGAAAGTATACCATCTTATGCCTTCAACCGAGTCCCCTCGCTCCGAAGGCTGGATCTAGGTGAGCTCAAACGTCTCTCCTACATTTCCGATGGCGCCTTCAAGGACTTGAATAACCTGCGCTACCTGAACCTGGGAATGTGCAACCTCAAGGAGATCCCCAACATCTTACCCTTGGTCAGGCTCGAGGAGCTAGAAATGTCAGGAAACCAGCTCTCTGTCGTCAAGCCCAGCGCATTTTTAGGATTAGTGAACCTCCAGAAGCTGTGGATGATGCACACCCAGGTCCAGACCATCGAGAGGAATTCCTTCGATGACCTCCAGTCACTGGTGGAGCTCAACCTTGCTCACAACAACCTTACCTTCCTACCGCATGACCTCTTCACGCCGTTGCGTCGCCTGGAGCGGGTCCACCTCCACCACAACCCTTGGAACTGCAACTGTGACATCCTGTGGCTCAGCTGGTGGCTGAAGGAGACGGTGCCGGCCAACACCAGCTGCTGCGCCCGGTGCCATTCGCCCGCCGTCTTTAAAGGCCGCTACATTGGGGAGTTGGACCACAGCTACTTCCAGTGTGACTTCCCCGTCATCGTGGAGCCGCCCAGCGACTTGAACGTGACGGAGGGCATGGCCGCCGAGCTCAAATGCCGCACGAGCTCGCTGACATCCATCAGCTGGCTGACGCCAAACGGCTCGCTGGTGACACACGGGGCTTACAAGGTGCGTCTGTCGGTGCTCAATGACGGGACGCTGAACTTTACCACCGTCACGATGCAGGACACCGGGACCTACACCTGTATGGTGAGCAACACGGCGGGCAACATTTCCGCCTCCGCCGTGCTTAACGTCACTTCTGTGGAAAACAGCGGGGTGACCTATTTTACCACAGTCACCGTGGAGACCACCGAGACCCCGGGGGACGATAGCCAAACGCCGCTTCCCCCATTCGGCTGGGTGTCCTCCACGACGAGAGCTACTCCCATTTCGACAAGGATCACAGAGCGGACTTACACAATTCCAGTTCTTGATCCGGACGGAGAGGGCGCCCTCAATGGCCTGGACGAGGTGATGAAAACCACCAAGATCATCATCGGCTGCTTCGTGGCCATCACGCTCATGGCCGCCGTTCTGCTGGTCATTTTCTACAAGATGAGGAAGCAGCACAACCAGCAGGACCCCGACGGCCCCGCGTCCTCCATGGAGGTGATAACAGTCGAAGAAGAGCTCGCCGGGGTCGCCGCCATGGAGAGGCACCTGTCGCTGGCCCCTCTGGAGCACTACAACCACTACAACACCTACAAGAGCGCCTACCACCACGGTCCGATGCTCGGTACCCTACACAGCTCGGCCACGCAGGAACCTTTACTGATTCAGACCTGCTCAAAAGACAATGTACAGGAGACCCAAATCATGCTGAACAAAATGATCTCCTCCCTCCAGCGCCAGACAATGAGAGGTCGTAGGCTGAAGGGGGTGCTGTCCAACCCCCTCTTTGTGCTGCTCTTGACCCTCCAGATCTTGGTGGTGGCTGGGCTGGTCCGCGCTCAGACCTGCCCCTCCGTCTGCTCATGCAGCAACCAGTTCAGCAAAGTCATATGCACCCGCCGGAGCCTACGGGACGTCCCGGACGGCATCTCCACCAACACTCGCTACCTGAACCTCCAGGACAACCTCATCCAGGTCATCAAGGTGGACAGTTTCAAACACCTGCGCCATCTGGAGATCCTTCAGCTGAGCAAGAACCACATCCGCAACATTGAAATCGGCGCCTTCAATGGACTCGCCAGTCTCAACACCTTGGAGCTCTTCGATAATCGGCTTACGATAATCCCCAACGGCGCATTTGAGTACTTGTCCAAGCTAAAGGAATTATGGCTGCGGAACAACCCCATCGAAAGTATACCATCTTATGCCTTCAACCGAGTCCCCTCGCTCCGAAGGCTGGATCTAGGTGAGCTCAAACGTCTCTCCTACATTTCCGATGGCGCCTTCAAGGACTTGAATAACCTGCGCTACCTGAACCTGGGAATGTGCAACCTCAAGGAGATCCCCAACATCTTACCCTTGGTCAGGCTCGAGGAGCTAGAAATGTCAGGAAACCAGCTCTCTGTCGTCAAGCCCAGCGCATTTTTAGGATTAGTGAACCTCCAGAAGCTGTGGATGATGCACACCCAGGTCCAGACCATCGAGAGGAATTCCTTCGATGACCTCCAGTCACTGGTGGAGCTCAACCTTGCTCACAACAACCTTACCTTCCTACCGCATGACCTCTTCACGCCGTTGCGTCGCCTGGAGCGGGTCCACCTCCACCACAACCCTTGGAACTGCAACTGTGACATCCTGTGGCTCAGCTGGTGGCTGAAGGAGACGGTGCCGGCCAACACCAGCTGCTGCGCCCGGTGCCATTCGCCCGCCGTCTTTAAAGGCCGCTACATTGGGGAGTTGGACCACAGCTACTTCCAGTGTGACTTCCCCGTCATCGTGGAGCCGCCCAGCGACTTGAACGTGACGGAGGGCATGGCCGCCGAGCTCAAATGCCGCACGAGCTCGCTGACATCCATCAGCTGGCTGACGCCAAACGGCTCGCTGGTGACACACGGGGCTTACAAGGTGCGTCTGTCGGTGCTCAATGACGGGACGCTGAACTTTACCACCGTCACGATGCAGGACACCGGGACCTACACCTGTATGGTGAGCAACACGGCGGGCAACATTTCCGCCTCCGCCGTGCTTAACGTCACTTCTGTGGAAAACAGCGGGGTGACCTATTTTACCACAGTCACCGTGGAGACCACCGAGACCCCGGGGGACGATAGCCAAACGCCGCTTCCCCCATTCGGCTGGGTGTCCTCCACGACGAGAGCTACTCCCATTTCGACAAGGATCACAGAGCGGACTTACACAATTCCAGTTCTTGATCCGGACGGAGAGGGCGCCCTCAATGGCCTGGACGAGGTGATGAAAACCACCAAGATCATCATCGGCTGCTTCGTGGCCATCACGCTCATGGCCGCCGTTCTGCTGGTCATTTTCTACAAGATGAGGAAGCAGCACAACCAGCAGGACCCCGACGGCCCCGCGTCCTCCATGGAGGTGATAACAGTCGAAGAAGAGCTCGCCGGGGTCGCCGCCATGGAGAGGCACCTGTCGCTGGCCCCTCTGGAGCACTACAACCACTACAACACCTACAAGAGCGCCTACCACCACGGTCCGATGCTCGGTACCCTACACAGCTCGGCCACGCAGGAACCTTTACTGATTCAGACCTGCTCAAAAGACAATGTACAGGAGACCCAAATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000372	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050541	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0050770	Biological Process	regulation of axonogenesis	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan
GO:0098978	Cellular Component	glutamatergic synapse	Interproscan
GO:0099061	Cellular Component	obsolete integral component of postsynaptic density membrane	Interproscan
GO:0099560	Biological Process	synaptic membrane adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-