Gene detail

Detailed information of HS03400 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03400	SENTRIN-SPECIFIC PROTEASE 8	chr4	29068503	29071514	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03400

GATTCAGCAGCTTCGGACCTCCCGGTGTCTTTAGTGGCTCCACACATAATACACGTCAACATTGACCCCAGCTCACTGCGGACGAACCCTCAAACCAGCACAGAACCCGAAGAGCAAGATGATGACGAAACACCGGAAGGGGGTCCTTTTGATATTTATGCCGAATCATCCtgcAtGGGCACGTGAGTTTATGATGCTGCGTTTCCTTCATCCAACGCACAACAACATCAACCTGCACTGGCACGACGGAGGCAAACTACCAGACACACTAGCATCACGATGACATCTTTAAATAAATCAACAAAAAAGGAACATCATCATCATCATCTTTGATATGATCACAGGGTGGTAAATATTGACACATTGACAGCGAGCTGCAAATCAAACTTTTCACACCACACGCAGCTGAACACACACAAACACACTTCTGGTTCTTGCGACTATCCATTCAAGGAGAAAGCCTCTCcacacacaaatacacacacacacacacacacacacacacacacCTGAAAAGCCACGAACAACCATCTTGCAAATGAGCGCATGACATGTTCTTGATTCACTGGTTACTTTGCAGCCTCTCTTCCCACTGCGGGACAGCcacacacacgcacgcacaggcacgcgcgcgcgcacacacacacccacaGTGTCCCAATCCTAAACATCACACTCTTACCTCCAGACGTGACCGCTGAAGTCAATTGTAAGTGGGGCTCAAGTTTTCCGTCCGGGCTCAGGATGGGTTTGCAGAGCCACAAACACCCGCAGGCGCACTAAATACCTACGTCTCTATTTAATTCCCTGCATTCCCATTGAATTAATTGGGGTGTTCCTGCTCCCTCTCCCGCCGCTCGGCTCCGAACAACTCCTCGAAATTCAAGTCCGCGCGGACTACTTGCGTTGCTCTCGTTTCGTTTGTATCATCCGTGCGTGTTCGCCGCTGTTGGACGTCATTTAAAAGAGCAGTCCTTCGCAGCTCGCTGACGGTCGCTGAAAACTCCACACTTTGCCTTGCTAATCAGTGCCGCCGCTCTCGGGGCGCGCGTCCGTGCGCGGTCACGCTGCTGCTGGGCGGGGAGAAAGAAAAAAAGGAGGAGCGTGACGGAGCCGAGCCTCCCCGGAGCAGAGCTGTCGGGAGATTGTAATCTAGTGGCCGCACGAGATATTGCAACTTCCGCATTCATCcGAACGCCCCCCCCCCCAAATAAGTACTGTTTCACAAACACACTCGTTAGTGGCTGTAAAACGATTCATACATTTTTATGAACCCCCAACGGCTGAAGCAGGACTCAAGCGAGCATGATCTATCGACTCCAACATGCTAAAGTGTGAGGATATACGCCGGAGACATATACATATAACTATCATGTGCACCCGTTGGGCAATACTCATAGGAATGAATGGGGCGCCATTTTTTAGCGAGTTATCAAGTCCATaTGATCCAGTCCGGCTTCCGTAGCGAGACACAGGAAGTAGGcACGGGAACGACATAACACGGCAGCGCTAAACACACCACACACCACATCATTTTAAATTAAGTTTAAAACATATTTTAGCGTGTGTTTTGACTTTATATAAGATTACCATGACAGGTAATaTGCTCTTTCTTTTACATATTTTACTCACTTTTGGATTATACAACTGTAAAATGTAAGCACAGATAACTGTTCAGTCACTGGAGGTAACAAAACAGACGGGTAGCCTTTCAGTAAACGTACTGCGCAGGTACCCTGTCGCAAAAAAAACGTTTTCCGGTAGCGGTTTACGTTAGTCATTGCAATGAGAaACAATACCCCGGTTTTCTTAGTAGTTTTAACCTGAGTGTGTCTTTTACAGGTATGGACATTCAATCAAGTGCGTGTGTTTTAGTTTGACTTTGTATCGTTCATGTTCTACCGGCTTACATCGCTTTACAGCCGAGTTGTTTGGCTTCGTGTGACGGCGAAAGTGGTCCTAACGTAAGACCGTTTTACCAGTTATATGACGATTTCACCAGTTAACGCCAGCTAACTGCCTGCCGGAAAACAAACGGTGGATTTAACGAGCTGCAGTGACGTgatgctcagcagtgacgtCACTGGACACCGCCTGCCTGAAAATGTGTATAGTTATTTAACTTGTATATGATTGTTAAGTGTTCAGTGTCCATCGAAGTTAACGAGTTTATGTACCTTGAACACAGCTTCATGGACAGTTCATCAAGTGAAGATGAATAATTGGATGCATTTATTAGTTTTACTTGCTAAAAGAATACTAATATAAATTTAACCAAAATGATTCTTGATTGACTTGGCTGTCCTGAAATGTTCTGTTTGTTTCAGACGGAcTCTCGGTGTTGGGACGATGGACCCGATAGTGCTGAGCTACCaGGACAGCCTGTTGCGGACTGCCGAtGTGTCCTTACTGGAAGGACCTTACTGGCTCAACGACCAAGTCATCGGCTTTGCCTTTGAGTACTTTGCTGCAGAGCGCTTCAGCGTCCTGGGGGAGACCGTCACCTTCGTCAGCCCACAGGTCACCCAGTTCATCAAGTGTGCCTCCTGCCCCAACGAGTTGGCCCTGTTCCTGGAGCCCCTGGATCTCGCGTCTCGCCGATGGGTCTTCCTCGCCGTCAACGACAACTCCAACCAGAGCGCCGGGGGTTCCCACTGGAGCCTGTTGGTCTACCATCACGACTCCAACCACTTTGCGCACTACGACTCTCAAAAGGGCGGCAATTCGCGGCACGCGCGGCGCATCGCCGGCAGCCTGGATCCCTTCTTGGGCGCGGGGAGAAAAGCGCAGTTTGTGGAaGAGCCCTGCCCGTCGCAGAAGAACAGCTACGACTGCGGCATGTACGTGATCTGTATCGCGGAGGCCCTGTGTGAGGAGGCCAGGGTGGAGGGCTCGCCGCGCCTCCCTGTGCAGATCATCACCCCGGCCTACATTACCCAGAAGAGGGCCGAGTGGTGCGGACTGATCCAGACTCTCGCTCAGAATAACCTCTGCAGCGCGCTGTCCTTGCCTGATTCAGCAGCTTCGGACCTCCCGGTGTCTTTAGTGGCTCCACACATAATACACGTCAACATTGACCCCAGCTCACTGCGGACGAACCCTCAAACCAGCACAGAACCCGAAGAGCAAGATGATGACGAAACACCGGAAGGGGGTCCTTTTGATATTTATGCCGAATCATCCtgcAtGGGCACACGGAcTCTCGGTGTTGGGACGATGGACCCGATAGTGCTGAGCTACCaGGACAGCCTGTTGCGGACTGCCGAtGTGTCCTTACTGGAAGGACCTTACTGGCTCAACGACCAAGTCATCGGCTTTGCCTTTGAGTACTTTGCTGCAGAGCGCTTCAGCGTCCTGGGGGAGACCGTCACCTTCGTCAGCCCACAGGTCACCCAGTTCATCAAGTGTGCCTCCTGCCCCAACGAGTTGGCCCTGTTCCTGGAGCCCCTGGATCTCGCGTCTCGCCGATGGGTCTTCCTCGCCGTCAACGACAACTCCAACCAGAGCGCCGGGGGTTCCCACTGGAGCCTGTTGGTCTACCATCACGACTCCAACCACTTTGCGCACTACGACTCTCAAAAGGGCGGCAATTCGCGGCACGCGCGGCGCATCGCCGGCAGCCTGGATCCCTTCTTGGGCGCGGGGAGAAAAGCGCAGTTTGTGGAaGAGCCCTGCCCGTCGCAGAAGAACAGCTACGACTGCGGCATGTACGTGATCTGTATCGCGGAGGCCCTGTGTGAGGAGGCCAGGGTGGAGGGCTCGCCGCGCCTCCCTGTGCAGATCATCACCCCGGCCTACATTACCCAGAAGAGGGCCGAGTGGTGCGGACTGATCCAGACTCTCGCTCAGAATAACCTCTGCAGCGCGCTGTCCTTGCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR044613	Family	NEDD8-specific protease 1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46468	SENTRIN-SPECIFIC PROTEASE 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000338	Biological Process	protein deneddylation	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0019784	Molecular Function	deNEDDylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-