Gene detail

Detailed information of HS03373 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03373	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	chr4	27668436	27670473	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03373

ATGATGTCTCTTGCTGCCCGGTCAGGGGCTTTCTCCCCTTACATGCAAGCTACAGCTGCTGCTGTGGCGGGGCCCCTGAAAACTCTGGTCCCCGGGGTTGTCTTGAAGGGAGAGAAGATTTTACTGGACCCGAAAAAACAGTTCCTCTGCCGCGAATCGCTCACCGGTCAAAGCCCAAAGACGGGGCCTGCTGTGACGGTCAGCATTAATGGTgAGTCTGACATTACCGACGTTAGCTGGCTGAGTCCACTTTCTGTTGTTCTAACATGTCCATTGCAAGTGACGGTGAAAGTGATCGTCCTGAGCTGTGTCTGTGCTAACATATGACACCCAGTTACCACTGAGAGATACCAGAGTGCAGCTCGTGttagcggagctagctttagcgtagctagcgttagcTTCCGGCTTTTCCGGGTTGTTAGCTCGCATCTTGTTCGCCTACATTGAGGTCAACGTCGCATATGGACGATGTGGCTCTTATTCCCTTGTTTGTGGGACTGACGACACCTTTTGTGGTTCGAAACAAACTATGGAGGTTGGATAGTCATCTTTCCTATCATGGAACCGTGAGGTTAGCCATTTCAAACGCTGGTGTCCTCGTATCACCCCCGTGACTTTCTACATCGTGTCAGTGAAGTGGTAAAAGGTCGATCACATTTTCATAACACTGTACTGTAACCAGATACGATTGTtCTGTGGTCTAATGTTAGCTACCAATAGatTATGTGGTTGCTCTTCCATATGTCCTGCATATCATGATCTACTCTGACCCTTCAACACATGGTCTCTaCTCGTATTATGGAGTCTGTTGTGTTGATGATGAATTATGTTCTGTTAAGCTTATttGTCTACACGAGTAAAAATGTGACCCATAGGCACAGATGACtAGCATTACGAATAACTCCATAGAAATAGACACaCTCTGATGCTCGTTATGATGAAGGTCATAACGAGGCAGCCGTGCTGAATCGAGATCTAACATCGGGCTACAAAAACCCAAATGTGGTGACGGCCGACTCGTGGAAGTCTCGAGCCTCGAGGTTTCCCGCTCGCTGATGGCtGtCATTTCTcGAAGaTATTTTAAGTATTAGTTTTCGTCTGATCTTGAGTGATGGCCACATCGTTTGTTTACACGCTGTAACGCAGCAGATGCCAACGTTCTGTCATCCCACACATTGAATATCAGCGCAGCGGATTTCATTAACCTGGATTTCAATTCATTTAGTGGGACAGTGTGCTGATCATAAAATGGATCGCCACATTAAATGCATCTaAAGTCAATTGCCAATAAGTGCATACGTGTATATTGTGACAAGTTACGGTTTTAGAAATCGGAGTTCCTCCAGCACAAATGGACCCGCCCTGTGTTGGTGTTGGCTCTCATTGGTCGATGTCTAACTGCTGACCGGTGTTGCTCTTGTCTGCAGGCTGTGCAGGAGTCCGATTTGCCCACACGGATATCAGGGTaCCGGACTTCTCCGACTACCGCCGTCCAGATGTGCTCGACCCCAACAAGTCGTCCCGgGAGAGCAGCGAATCCAGGAAGACCTTCTCCTACCTGGTCACCGGCGCCACCACCGTGCTGGGCGTCTACGCCGCCAAGACGGTGGTCACGCAGTTCGTCTCCTCCATGAGCGCCACGGCCGACGTCCTGGCCCTGTCCCAGATCGAGGTCAAGTTGGGCGACATCCCCGAAGGCAAGAACATGACCTTCAAGTGGAGAGGCAAGCCGCTGTTTGTCCGCCACCGCACGGAGAAGGAGATCGCCACGGAgGCCGGCGTGAACCTGGCGGAGCTGCGCGACCCCGAGCACGACAAAGACAGGTTCCAAAACCCCAGCTGGGTCATCGTCATCGGGGTGTGCACACATCTGGGCTGCGTGCCCATCGCCAACGCCGGCGACTACGGCGGTTACTACTGCCCGTGTCACGGCTCCCACTACGACGCCTCGGGCCGCATCAGAAAAGGCCCCGCCCCCCTCAACCTCGAGATTCCCTCCTACGTGTTTCCAGACGAGGACACCGTTGTCGTCGGAATGATGTCTCTTGCTGCCCGGTCAGGGGCTTTCTCCCCTTACATGCAAGCTACAGCTGCTGCTGTGGCGGGGCCCCTGAAAACTCTGGTCCCCGGGGTTGTCTTGAAGGGAGAGAAGATTTTACTGGACCCGAAAAAACAGTTCCTCTGCCGCGAATCGCTCACCGGTCAAAGCCCAAAGACGGGGCCTGCTGTGACGGTCAGCATTAATGGCTGTGCAGGAGTCCGATTTGCCCACACGGATATCAGGGTaCCGGACTTCTCCGACTACCGCCGTCCAGATGTGCTCGACCCCAACAAGTCGTCCCGgGAGAGCAGCGAATCCAGGAAGACCTTCTCCTACCTGGTCACCGGCGCCACCACCGTGCTGGGCGTCTACGCCGCCAAGACGGTGGTCACGCAGTTCGTCTCCTCCATGAGCGCCACGGCCGACGTCCTGGCCCTGTCCCAGATCGAGGTCAAGTTGGGCGACATCCCCGAAGGCAAGAACATGACCTTCAAGTGGAGAGGCAAGCCGCTGTTTGTCCGCCACCGCACGGAGAAGGAGATCGCCACGGAgGCCGGCGTGAACCTGGCGGAGCTGCGCGACCCCGAGCACGACAAAGACAGGTTCCAAAACCCCAGCTGGGTCATCGTCATCGGGGTGTGCACACATCTGGGCTGCGTGCCCATCGCCAACGCCGGCGACTACGGCGGTTACTACTGCCCGTGTCACGGCTCCCACTACGACGCCTCGGGCCGCATCAGAAAAGGCCCCGCCCCCCTCAACCTCGAGATTCCCTCCTACGTGTTTCCAGACGAGGACACCGTTGTCGTCGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00355	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan
PF02921	UCR_TM	Ubiquinol cytochrome reductase transmembrane region	Family	Interproscan
PF09165	Ubiq-Cytc-red_N	Ubiquinol-cytochrome c reductase 8 kDa, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004192	Domain	Cytochrome b-c1 complex subunit Rieske, transmembrane domain	Interproscan
IPR005805	Domain	Rieske iron-sulphur protein, C-terminal	Interproscan
IPR006317	Domain	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	Interproscan
IPR011070	Homologous_superfamily	Globular protein, non-globular alpha/beta subunit	Interproscan
IPR014349	Family	Rieske iron-sulphur protein	Interproscan
IPR015248	Domain	Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminal	Interproscan
IPR017941	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan
IPR036922	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan
IPR037008	Homologous_superfamily	Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10134	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005750	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan
GO:0008121	Molecular Function	ubiquinol-cytochrome-c reductase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-