Gene detail

Detailed information of HS03151 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03151	VASCULAR ENDOTHELIAL GROWTH FACTOR	chr4	18474717	18478908	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03151

CTGATGAAGATGAAGCGGACTTTGTGCAGACTCTCTTGCTTGGTGACTCTGGTGGTGGAGCTGAGCTGGATCAACGTGGGCCACGGCATGCACAGAGAGGGAGGAAGCAGGGTAAGTGTGGCGGATAGCCTTATGCCTTCAAGTGCATGTAATATATATCACGACAGCAACAACAGAGTGTGTTTTCTTTTGCAGTCAAAACAACTTCATTATCTAACTTTGTTCAGAGAGCAGAAATCTAATCACTGCATTGCTTCTATCTTCTTGATGATTTCACACACTTCCACAGTGTCCTGCTCTCACTCTGTTCCTCATTAGTGGGTCTATCCTCTGGTAGAAATTTGCAGAGGGAAAACCTCCCTGTTTTCTGTTGTTTCTCTGGTTTTGGTGGAGGCAGTCAGATAGCCGACCTGCCCCACCCTCCACTGCAACACACTGAATGCATCACAGGGCTCAGATTGTTGTCCAGAGGGGTAAAAAAGAAAATACTGGGCCGACATGTGCAATATTCATGACTGTCCTCTCTCTGACGTTTGTAGACCGACCATCCGATATCCTTTTTTTGGATTTCCCGCCTCAAAACTAAGCCTCTCCACAGAGAGTTCACACCCATGACTCTTAGAATAAACTCAACTAAAGGACTATGTATTTCACAACACACTGTATCTATATGTAATTATTAATATGTGATTTAATCTGTTTGATTGTGCTTCATGTCAACACGGGAGCTTTGCCCTTCTCATGGAGAGGGACAGGTGGTTGTATGGTTAACTCTACCACTGTTGCTTTCTCCCAAAGTGCATGCTTGTGGTTTTGATTGGCTCAGACCCACGTGcagagctgccgctagccatgttggtgccctaagcataactcctccatgatgccccccctgagataggaaaaggCAgtggtggtggtggtggtgggggGGggggggtgctgagcgattaaacatctctcttgttctgcctgttttgtgcctaatatttctagactgaaataatatcggcattataattattataactatgaggatttttttagttgcctattttgtggagccccctcaggacttggtgccctacgcacagcgcgtagtgcgcgttatgggagcggcggcgctgcccacGTGTGTCACATGTCCTGAGTTAGCATGTCATTCTTCTCGTGCATGTGAACGTGTCCTCTTTCAGGAGCAGAGTCGTGAGACTTCAGAATGAGCAGCGTTCAGAGGCACAGGGGCAGGCTCACAAATGCAGCTGTTGATAATTAGAAAAGAaaatatgtaggattcatcctctgggaacaatgaatgtctcttcctcatttgatggcaatccctgcaataatttcagtctggaccaaagtggttcatccgtagagccatgctgcTTCATGCTGCTCACCTTCCAGAGGATTCTTTAGGCTTTTGATTATTGTCTTCTGCCttcattaccttcgcattgaaaatacggaaggttatgttttgatcgccgtgtatttatttatttatttgtatgcgtgttattcgcataacaaaacaagtttttaaccgaatcgcatgaaatttggtgggatgattggttattatccggggaccatttgattagattttggggtcgatcgggtcaaaggtcaaggtcatggaaaggtcaacatcttctttttaccatagcgcggtcaatttttatccaattggcatgcaactaatgccaacatgttcataattcaatgcccgatcttgtgatatgcgaaggtatgcgctctaccgagtgcccgttctagtttcacctgcattaatcttTACTAATGACACGCTTTTTGCGGAAGAAGCCGGAATGTACTTAGGCCATGAGTGGTTTTCAATAGTGGCATTACAGTTTTTATTTGCCTAAGAATCCCCAAAAAACAAGTGAAATTGGGATTAAAAATGAGAAGTTATGATGATTGACTGATCTCTGCAGATCATGAGGCAGTGGGAGAGGAAGGTGCGCTCAGCCTCCAGCCTGGATGAGCTGCTGAGGCTCGCAGACTTCCCAGACTGGAAGTTGTGGAAGTGTCGTCTGAGACTGCAGCAGCCGGAGACCCTCTCTTCTCCGCCGTCGGCGGGCTCCCACCGCTCAACGCGCTACGCTGCCGAATCTTACAGCCTGGAGATACTTAAAGGTCGGATAAAACATGCAGCGGCCTACATGTTTCCGGCGAGTCCGTGTGTTGTGGTGGTGAcGAACATTGTGCTTCTCCCACTTAGCCATAGACGAAGAGTGGCAGCGGACTCAGTGCATGCCGAGGGAAACGTGCGTCGACGTCGCCAAGGAGCTGGGCACCGACCCCTCGATGTTCTTCAAGCCACCCTGCGTCTCCGTCCACAGGTTTGTTTGACATGAAGCAAGACCCAGACCTTTAACACCGAGCTCAATGCTCTCGCACCGCATCTGTGTCCTACTTCTAACACTCACGCTGACACGAGTTCCTCAGCAGTCATTCATGAATATGTCGACAGTCAGGGTGGACATTAAAAAGCTGGACTCCGTGGAGTCAAATACAACAACTTCCTGTGAGTTCATTTTCCTTTGCACGTCACTTTACCCAGATGTGAATTTGTTCTCCTACTGACAGGTGCAGTGGCTGCTGCAATCAAGAGGGCGTCACCTGCAGAAACACAACTACTGAGTATGTGAATAAAACTGTGAGTGACCAAATCTCAGATGATAAGTGTATACACCATGAAACCTTTTTATTTCATCTTTTTTCGATGGTTGAAAATATTTtgtgtgtgcttgtgtgcgtgtgtatgtgtgtgtgtgtgtgtttttttctgtgcttctgtgCATTTCAGGTCCTACGTGTGATTCCATTTAAGTTTGTACCGGAGCCTGTTCTCATAAAAGTAGCTAACCATACAGAGTGCAGGTGCATGGAGCCTGCTATAATACGACGTAATGCTCAACCTCACAGGAGCAGTGGGTGAGTCCAATATGTCACCCAATCTCACTTCTCAAAGGAATTTGGTCTGATGTGTTTTAAATGCATTGTATGATCTGTTGCGATCCGTCTGGTTTCATGGCAGCTGCTCTCCGATGGGCCAGCTGTCAGACGCAAAGGACTCCAGGAGACTTTGTGCCAGTGGTTTGATTTGGGATTGTTCAACTGACAGATGCATCCCATACCCTTCCAGTTCACCAGgtgtgtgtgtgtgtgtgtgtCAACAACTGTTGAATGGATTGGCACATCATTGTGAACAGGAAAACGCTGCATATGTGAAAATGTTGTATCCAACACAACAAAACAGCAGCGTTGTCTTTGTGAGCATGTTTATGCGACAAGCAATCGATTCACATATAATCAACACAATCGGGAGCTAAGACAAAGTCCTCGCAGCAAGGAGGTTGGTGAATGGGTGGGTCTCATAACAAAGACTTTCCAAACTGATGTCGGCTGTGTTATACGACAGAGATTCAGCTAACAAGATGAAACATGATACGTGCATTTGCTTTGTGATTTAAATGCAACATTATTTCCCGCTGTTTAGAATTTCCACTCAGTTCATGGATGCCCGACTGTGAGATCGACGCCGAGCGCTGTGACTGTCTCCTTCGATCCGTACCGACTCCGCAGCCAAGATCAACCCAGCGCTGTCGGCTCAACTCCTCCATCTGTGCCCATAGACAACAACATTTTGAGCAAGCCTCCTGCAGGTAGGCCAGAGAGAAGCATTTAACCCTGAGCCCTATCCCTCGGGTAAAATCACAGAATCAATGTAGCCAAAATTAATCAGGAATAGCTCCTCAAACCTAAGGCTTACATGCATACATATATAGTCTCCTTTGAAAGGTAGGCAGCACATGAATATGAATCCATTGTAAgTAAACTATATTATCATTCCAGAGTAAATCGAAATTGTAGAACAAACGATTCATGGAGCTTTATGGAGTGTTTTTGCCATGTTGACTGTTTAGTGGAGGTTTCACTTAATAACGCCATGTTTTTCCTGAAAGCCACATTACAAATAACATTTAAAACAAATTATTGTTTTTCGTAAAAAATGGCTCATATCCAAGCCGATCTGTGTGGCCTCCGGTGGATTGGAAGTGTTATCCAAACTTTCTGAGCTCTGGTGTCTCATGTTCATGgGTATTTTATGCTCCTAAATTATCCGTCTTTTATTCACAGGTGCAAATGGCCCAATCTGATGAAGATGAAGCGGACTTTGTGCAGACTCTCTTGCTTGGTGACTCTGGTGGTGGAGCTGAGCTGGATCAACGTGGGCCACGGCATGCACAGAGAGGGAGGAAGCAGGATCATGAGGCAGTGGGAGAGGAAGGTGCGCTCAGCCTCCAGCCTGGATGAGCTGCTGAGGCTCGCAGACTTCCCAGACTGGAAGTTGTGGAAGTGTCGTCTGAGACTGCAGCAGCCGGAGACCCTCTCTTCTCCGCCGTCGGCGGGCTCCCACCGCTCAACGCGCTACGCTGCCGAATCTTACAGCCTGGAGATACTTAAAGCCATAGACGAAGAGTGGCAGCGGACTCAGTGCATGCCGAGGGAAACGTGCGTCGACGTCGCCAAGGAGCTGGGCACCGACCCCTCGATGTTCTTCAAGCCACCCTGCGTCTCCGTCCACAGGTGCAGTGGCTGCTGCAATCAAGAGGGCGTCACCTGCAGAAACACAACTACTGAGTATGTGAATAAAACTGTCCTACGTGTGATTCCATTTAAGTTTGTACCGGAGCCTGTTCTCATAAAAGTAGCTAACCATACAGAGTGCAGGTGCATGGAGCCTGCTATAATACGACGTAATGCTCAACCTCACAGGAGCAGTGGCTGCTCTCCGATGGGCCAGCTGTCAGACGCAAAGGACTCCAGGAGACTTTGTGCCAGTGGTTTGATTTGGGATTGTTCAACTGACAGATGCATCCCATACCCTTCCAGTTCACCAGAATTTCCACTCAGTTCATGGATGCCCGACTGTGAGATCGACGCCGAGCGCTGTGACTGTCTCCTTCGATCCGTACCGACTCCGCAGCCAAGATCAACCCAGCGCTGTCGGCTCAACTCCTCCATCTGTGCCCATAGACAACAACATTTTGAGCAAGCCTCCTGCAGGTGCAAATGGCCCAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00341	PDGF	PDGF/VEGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000072	Domain	PDGF/VEGF domain	Interproscan
IPR023581	Conserved_site	Platelet-derived growth factor, conserved site	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR050507	Family	Platelet-derived/Vascular endothelial growth factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12025	VASCULAR ENDOTHELIAL GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001666	Biological Process	response to hypoxia	Interproscan
GO:0001934	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0001938	Biological Process	positive regulation of endothelial cell proliferation	Interproscan
GO:0002040	Biological Process	sprouting angiogenesis	Interproscan
GO:0005172	Molecular Function	vascular endothelial growth factor receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038084	Biological Process	vascular endothelial growth factor signaling pathway	Interproscan
GO:0042056	Molecular Function	chemoattractant activity	Interproscan
GO:0043185	Molecular Function	vascular endothelial growth factor receptor 3 binding	Interproscan
GO:0045766	Biological Process	positive regulation of angiogenesis	Interproscan
GO:0048010	Biological Process	vascular endothelial growth factor receptor signaling pathway	Interproscan
GO:0050930	Biological Process	induction of positive chemotaxis	Interproscan
GO:0060754	Biological Process	positive regulation of mast cell chemotaxis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-