Gene detail

Detailed information of HS03015 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS03015	SORBITOL DEHYDROGENASE	chr4	13980039	13983435	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS03015

ATGGCGGAGGAAAACCTGTCCGTGGTGCTGCACGCACGGGGAGACCTCCGGGTGGTAGGAGACTGATTTTAAACTTGCGTCCACGTTAGTTACAGTCTGTGTGAATTAAACTGACTTCATACTTTTTGTTTTTTGTTTTATTTCTCAGGAAAATCGCCCGATCCCGGAGCCAGGGCCTAATGGTATGACATATTGCATGATTTCACCAAAAGGCAGATCGAAATATGTGATTATGATGTACATGCTTTGCAAAATAAGTTAAATTAATTACATTTAATGCAATCCAACTAACCTAGGTAATTTGTTTTAGTTTGATTTATTTTCATATAGGATTTGGTTTTAATCTGAAGGAAAAAACGTGCACTAGCTTTCATGGCATTGTACTGCATTTTTAATTATTCATTCTTAAAATAGTATTGACTTGCAAGTCAATAATGCCCTGGTGTCAAAAATAAATATTAGTTAAATATGTCACTTTCACTTTTGGTCAGTAGTTAGACAAAAGATAAGACTGAATTGACATGTTTCACTTCACATATTGATATTTTAATCATGTCCTACATTAAGCTTGATTTGTTCAGCATTTCAGAGGTCTGGAAACATGTTGGTCTGTCGTGTCTCTCTGTGACACGGTGACGCAATATGCAAACCCCCTGATTGGTCAGTACTGGACTCTGTCTTGTGTGTCATGTTTTGCACCCAGATGTTTTGCTCCAGATGAACTCAGTTGGAATCTGCGGATCAGATATTCACTACTGGCAGCACGGACGGATAGGGGACTACGTGGTCACAACACCGATGGTGTTGGGGCACGAGGCGTCGGGGCGAGTGGTGAAGGTCGGATCAGCAGTCAAGCACCTTGCCGTgggtaagtAGGTGAGCACTGCAGAAATCTGCCATTCTGTTCAAGTGGGAGTCACACAGAATTTTTTTTGAATACATCACAAAGATAATTGCTTCTGTCGACTCTTGTCCTTTGTCAAACTGCACCGGCAGTGCCACAAATGCATGTAAGCATACATGTGTGGCACTGTGACTTCATACACTGTTCATCATTTGTAATGCAATATCTCACCTTACATGTTATGGTATTGAAATCAAGTTCACTCTCAGCCACAAAGAGTTATGTGGATGAAGTCAACTTTAGTGTATTTTCTTTAGGTGACAGAGTGGCCATTGAGCCGGGCTCACCTCGCGAGATGGATGAGTTCTTCAAAAATGGACGTTATAACTTGTCTCCGACGATCTTCTTCTGTGCCACTCCCCCCGACGATGGAAATCTGTGCCGATACTACAAACACAGTGCCAACTTCTGTTACAAGTAACGGTTTTATTCAACATTGTTAAGGCTTTGCACCAGATATTACAACTTTTTGATCTCTTGACTGCCAACTCACTCTTGCCTAACTTTTCATATATCTCCTTTTCCCCCTATCTTTTCTCTTTTGTATCTTTCTTCAACCATCCAGGTTACCTGATAACGTGACACTTGAGGAAGGAGCCCTAATCGAACCTCTGTCTGTGGGGATCCACGCCTGTCGCAGAGCCGGTGTGACCCTCGGCAGCACCGTGCTCATCTGTGGCGCAGGTACAATGAGCACAAACTATTCAACTAACACAATTACACAAGAAGGACAATTCCATCGGCAAGATACTGCCTCTCAGGACACACTGCAGTGCAAACTAATGTAAAAAGAGGGTGATTGTGTTATGTTCATGTGTCAGGCCATTGCAAGCAGCATAATCTAGTTCTATAGACGATGGTGTGTGTGTCGTCACACAAGTGAGAATCATTCGGGCACAGCTTGAGTGTGTGTGGAAAACTACTGAACCTTCACACCCCTTGTAAGACACTTAATAATTAACGACTCCTATATGCTGCAAAAACAAGCTCACGCACATTGAGTCGTCCACATTGAGCATAACCAGGTGACACCGTTTCTTATATCTAAAAAAAACATCTCGACATTGGCTCTTTTTAATTGTATCGACCCAGTAAAAATTCAAACTTTACATTCACACTCGACACCGGTTCTATACGTGTCATCCTGCTTAATTCTTCTTTTCCCACAGGAACTATTGGGTTGGTCTGCTTGCTTGTTGCTAAAGCAATGGGGGCCTCACAGGTCGTCATCACTGGTGAAacacacacacacgcacacacacacacacacacggattctggtcGCATCTTACCTTCAGGCTTTTCTTTTTGTCTCTAATCCACCTCTGCGGTTCAGATATGTTACCCGAGCGTCTGACAATGGCCAAAGAGTTGGGTGCAGACTTCCAGCTGAAGGTGAAGATGGGAGACGAACCTCAGCATCTGGCCAAGAGCGTGGAGGAGCAGCTGGGCGCTCAGCCTCACGTTGCTATTGAATGCTCTGGTGTGGAGAGCAGCGTTCAAACGGCCATCTACGTATGTGACTATTCAGTGAAGACCACTTCATAATGTTTTCAGAGTTATGAAGCCGCTCTGCACAAATTACAGACAGTATtacatttactcaggtactgtactacttacaatttttaaatacttgtactttagttgacgcgttccagttcatgcaacattatacttcaactttccttcaactcaCACATTTGACGATTTGCTATATCGACTTGTTACTTGTATATATATTTCACAGATTTTAAAATATGTTGCGTGCATGATACTTATGTTATTTTTTCCAGTAATACTTCCAATACAGTTCTTAAATTTCTAATGGAATATTTTGACATTGTGGTTTTGCCGTTTTTACTGAAGTGAAGAGTCTCAATACTTTCCAATACGAGTACCATGTACTTGGTCCCCTGCGAAGCACAACGAGATTCAGTATCTGAATACCTATAATATAATCCAAGTTATGCGTCGATATGCATCTATTCCCTGCCAGGCAACACGTTCAGGAGGCGTGGTGGCGTTGGTGGGTGTTGGTGCTCAGATGGTCACTGTCCCTCTGTCCAATGCTGCCTTAAGAGAAGTGGACATCAGAGGAGTTTTCCGCTACTGCAACACGTGAGAAGCTTTTTGTTTGATAAGCAGATGTTCAAAGCAAAGCGGGAAGCAGTTCTACTGGAGAGTAATGTTGTATTTAATAATAAATGAGATTTCAAAATGAATCGCTCTCCTCATGTATGGCCTTGAGTGAAGCTCAACTCTATCAATAATAGTTAGCCATCACAGATTGAACTCTTGAGTGAAATGTTTGTCAATATGTGTTGCAGCTGGCCGATGGCCATCGCCATGTTGGCGTCAGGGAAAGTGAACGTGAAGCCCCTCGTGACCCACCGCTTTCCCCTGGAGCAGGCGGCCCAGGCCTTTGAGACCACGCGGCAGGGTCTCGGGATCAAGGTCATGTTGAAGTGCGACCTGAAGGACCAGAAGCCCATGGCGGAGGAAAACCTGTCCGTGGTGCTGCACGCACGGGGAGACCTCCGGGTGGAAAATCGCCCGATCCCGGAGCCAGGGCCTAATGATGTTTTGCTCCAGATGAACTCAGTTGGAATCTGCGGATCAGATATTCACTACTGGCAGCACGGACGGATAGGGGACTACGTGGTCACAACACCGATGGTGTTGGGGCACGAGGCGTCGGGGCGAGTGGTGAAGGTCGGATCAGCAGTCAAGCACCTTGCCGTggGTGACAGAGTGGCCATTGAGCCGGGCTCACCTCGCGAGATGGATGAGTTCTTCAAAAATGGACGTTATAACTTGTCTCCGACGATCTTCTTCTGTGCCACTCCCCCCGACGATGGAAATCTGTGCCGATACTACAAACACAGTGCCAACTTCTGTTACAAGTTACCTGATAACGTGACACTTGAGGAAGGAGCCCTAATCGAACCTCTGTCTGTGGGGATCCACGCCTGTCGCAGAGCCGGTGTGACCCTCGGCAGCACCGTGCTCATCTGTGGCGCAGGAACTATTGGGTTGGTCTGCTTGCTTGTTGCTAAAGCAATGGGGGCCTCACAGGTCGTCATCACTGATATGTTACCCGAGCGTCTGACAATGGCCAAAGAGTTGGGTGCAGACTTCCAGCTGAAGGTGAAGATGGGAGACGAACCTCAGCATCTGGCCAAGAGCGTGGAGGAGCAGCTGGGCGCTCAGCCTCACGTTGCTATTGAATGCTCTGGTGTGGAGAGCAGCGTTCAAACGGCCATCTACGCAACACGTTCAGGAGGCGTGGTGGCGTTGGTGGGTGTTGGTGCTCAGATGGTCACTGTCCCTCTGTCCAATGCTGCCTTAAGAGAAGTGGACATCAGAGGAGTTTTCCGCTACTGCAACACCTGGCCGATGGCCATCGCCATGTTGGCGTCAGGGAAAGTGAACGTGAAGCCCCTCGTGACCCACCGCTTTCCCCTGGAGCAGGCGGCCCAGGCCTTTGAGACCACGCGGCAGGGTCTCGGGATCAAGGTCATGTTGAAGTGCGACCTGAAGGACCAGAAGCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002328	Conserved_site	Alcohol dehydrogenase, zinc-type, conserved site	Interproscan
IPR011032	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR013149	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR013154	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR020843	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR045306	Family	Sorbitol dehydrogenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43161	SORBITOL DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003939	Molecular Function	L-iditol 2-dehydrogenase (NAD+) activity	Interproscan
GO:0006062	Biological Process	sorbitol catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-