Gene detail

Detailed information of HS02920 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02920	HISTONE ACETYLTRANSFERASE COMPLEX	chr4	10793277	10798807	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02920

GTGATAGTGTCTATAATGGCGTCCAGACGACGTCCCGCTGACAGCGTGAAAACagacaagaagaagaagaagacgacgacgacgaGTGAGGAAACCGCTGAACTCTGTTCACTTGTAGGCGACGAGCAGGTGAAGAAGAGTGTGCAGGAGGCGTGGAGCCAGAGGACTGCTCACAGACAGGGTGGGTGAAGCAGGAAAACTACAACTTTTATCAAAGCTCGTTGACACTTTGTAACGCTGCCATGTCACAAATATACATGAGACATTAACTCTTAACTGTATGCAGCTTGACTGTCAGGATACTATTTACTACCATGTACCCCTTGAACCAATGCAGGTGAACTATCCAGTAGTGACTTGACTCGTTGCTGTTTTGGTATTAATGATTGTCGTTGGCTTAATTATTGATATGTCATTTTATGTTATCATGGCTATTATATTGTATTGATTTTTCTTTACAAAATAATTGAGACGCTGTTTATGAATAACATAACCGGAAAGAGGTATATCTTTTCTAGGCCATAATAAAGACAATGGTGCTCATTGATTTGCAGTATGATGCTcAAATATCTAAGAGGTCCAAATATGAATGGTATAAACGGTTTGACAAAACACTGAGACCAGTTTATATTCTCTAATGGTACATTTACATATTGCCCAACCTTCTGACATGTCTTGACTCTATGAGTGGAGGATAATTATGTTCTCAATATCTTTTGATCTCATTTAACCTGCCCTACTTGAATAAATATGGACTTTATTTTGTAACTATCTCTGTAACTATTACTTAACTTTTCTTTTTGTGCAGTTCAGTTAATGTCTTCTGTTTGTAGTCCAGAGTCcTTCCACAAGCAGCAGGGAGTTATTTTTCCACATAATAATTTGATAcTCACCAGTTGACGGATTATTTTGTGTTTATTATGTGCAGGAGATCTGGAGTTGGACTGCCACCCTTTCCCTCACTGCATCATCAAGAACTTCCTCGGCAGCGAGACATTCGTGaAGAACTTGCAGAGAGAACTGATGGAGCTCAACTTCCATGAGAAGTCAAATGATCTGTACAAATTCAAACAGGTGTCTATAAACGGACCGTCTCACAGATTTATTCCTGTTGGTTTGTGTCGTTTTCTTATGATCTTCACTTTGTTGATGTTCCCACACAGTCAGACGACTTGAAGAAGAGAACAGAGCCACATATCTCGGGACTGAGGTAAAAAAACAACTTGTGTTTGTGTACTTTATGATTATTAGAAGTTGGTATGAGTTTCCTTCGTCAGTAGAAAAGGATAGATTGTTAAAGTGTAGATAATGTTGGTCTCAGAGGTACAATAAAAtAAAAAAAGGGGGAAGCTCATTctGTCAGGTGGGAAATATGCTCACAACTTGCTTTAATGTCCATTTGTATTACAGGTCATCTGTTCTAATAGACATAACATTTACTCAATCAATTTGCAAGTTGGTGTCTTAtaGTCTTtttaaggataagttattgtcattatgcaaaactggaatgcacaacaacattcagttgtagcttatttgaaaatgcaacaaacacgggacaaataaaacaaaagcagatgtacatttctgtcatgcatttatttTATGAATTTGCATCATAaggaacaaacaattctcttggtagataatatggctgacacattattcaacatggggaacacgttgtccatcaacgttgactgtttgagcattatgtgtaaactatagtccagctcttctcgtccctcctgggtcctgcactctgtcctcctgtccgcctgtcaagtgcagcttcatctgggatgGAGCCAATTAATCTTGATCAAGAGCCCAAATTAAACCAACAATTAATGCTGAATCGCCTGAGCTACAGCTGTGTTTAAAGCATAGTCCCTACTGGTAGTCCAGTGTAATCATTCCCAGCCTAACAGAAGGGACGACCTTTCTCTAAAGCTAGGTAATTTTATTATTCATCCTGATTTTGACTTTTTTGTTTTCTTTTTGCAAAACAAAATGTATCACATCTGTTCGTCCATTTTGATTGATATCCAATTTCATACCTGACAAAATGAGCTGTCTTAATTGAAACCCCTTTTCCTTCACTGATGATGTTCTTGAGGaACAAGCTCAAATAGTCAGCACTATGTTTTACTTGTTGCTGATCTCAGATCTGTAATTCCAGCGACACACGTTTAAACATACTTCTAGCTTCTCAAACCTTTTGCTTTGATAAAATGTGTGTTGCTGATGCCAGTCCCACACATATTCAACACATAAATTGAGAGATGTCTTAATTTCTGATCTAAAAATAAATGCGAAAGTAGTTTTGTGTCTCTAGTATTACTCTGCATTTCTAAGTGTAAAGTTTAAAAGAGGTTGTTTTAGTCGGCAGTGAATGAATCTCAAGGCATTAATGCTGGTGGAGACGAGTTTATCAGCTCCACCAGGTGGAGCCAGACGTCACACCGGTCTCCTACTTAGTGCATCCTGTTCTTTTAGTGGTTGATTCTGACGGCATTAACTGAGGCATGAGCTCAGTGGGAAATGCACTCAGCTGCAGTGGCTCAGCTGTGACCATTGTTAAAGCGAAAGGGCCGCTTCTTATTCAGTCTGGTTCCAGTGCTGCACTTTGCAGTGAACACAAGGGGAGCACACTGCAAGTTATTACAGCAGTGTAAATGTTGTGGCTTTCAAACAAATGACTCGAAACAAATATGTAATTGTAAAATTATAGAGCAGCAAACCTGCCAATATGCTCAGTGTTTTAACCAAGTAAAAGAAAAAACAAGGTCTCAGTGGAtAAATCAAGACGATATAAGCTGGGTGCCAATTTGAATCCTATTACCCAGATAACAAAGTAATACCAACATCTTTTTCCTTATTTTTTAaATTATTGTGCAGTTATTTTATgATGATTGTGACGAGCAGCGTTTACAGTGAGACTGCAACATGTACTTTCTTGCAAATATGTATTTGTGACTCTATACACTGGGCTACACCGACTGAAATACCGCCCTGGAATAAATACCACAATTAAACACACAATAACGACCTCCTCTCGTGATCATCTATTATTTATGTCACAACAAAATGTCACGGTAGGTTTGAGCACACCAACAATCTGTCTGTGTGGTGAGGCTTTCAAAAGGTCTTTACAGTTTATACAAGGTTAAAGGTTCATCCACATTGTTACTTTCAATACAAAACAGGATTGCACCATAAAATCTATTTCTTGTGTCACTGTTGTCAGGGCAGCACTGTTTGGGCGTTTCCGCTCTTGGCTTGGGGAGGTGTTGCAGGTTGCACTGGAGCCCGTGGTGGATATCTCTTGTGCCAAATATGAATACACAGGTGAGCTTTGTTTCAGGTTTTTGAGAAAGAAACTTCTGTGCATTTTCCTTTTTCCCCCAAATGTAAAGTTCCTTCTTCCTCCTAGATGTTCTTCTGTGTCACGATGATGAATTGGAGGGGAGGCGCGTTGCTTTCATCCTGTATCTCGTGCCTCCGTGGCAGAGCAGCGACGGAGGAACCCTCGATCTTTACACAACAGACAGTGAGCATCTTACTTTGTGTGTGTGTgAATTTCTGTGCTTTTCTCTAGATGAGTCTTGTGTAATTTCTtTCtCTGTCATCAGGTAATTTCCACCCACAGAGTATAGtgaagtcgctcgtaccctctttgaacacgctcgtcctctttgaagtTTCTCCAGTCTCCTTCCACCAAGTAAGAAAAGTTGCTCCTGCCTTTTCATCTTCaCCGTTGCACCAAGGAATCGGtTTTGATTGCAGATGATGAGATGTGTTGCGTTTGTCCAGGTGTCAGAAGTTTTGACGCGGGCCAAGTGCCGTTTGTCTCTtAGCGGtTGGTTTCACGGGCCGTCATTGGAGCGCCCTCCTCGCCACAGAGGGCCCCCTATCCCACGGAGCCCACACTTACCAAGAGATGTGAGTTTGGTCAAACGTTCACATTATCTTTACAGGAACAGTTTCAAATACATTTTAGGAAATACGCTCATAActtgtgtttgtttggcaaaagatttccgcttcagccatttagtttagctgagcatgatgactggaaacaaggagacagctggcctggctcggtccacagggaaaccaaataccaaaccaaatgaaatctaaatctcactcattaaaatGTTGAATCAAGTTTGTCTtgatttgaatattcttgtctgactttcagcaagaaagtgaatgtctatttcccaaaatgacaaactattccttTAACAGACATGTTAAACATTCCTACTGACTTGTGTTTTTGTGTTCATAACAGGAAACATTGCTGCTGGAGTGGGTCAATCCAGTGTACTTGGACATATCTTACCAAGAGCAGATCCAGGAGGAATTTGAGGACAGCTCGGAAATCCAGCTCAAAGATTTTCTCAAGGTAACTTCTCACTTGTGTTGTATGTTTCTTCCTTTGCACGTGTCTATTCCTTTCTGTCGGTTGATAGTGTTTATCTTCAGGAGGAAAAGTTCAAGGAGGTGAAAGAAGCACTGCACCTCGCTCAGATTCAGTGGACAAAGAGAGGACCACCTAATAAGAGGTAGGGCATGTTTCAGAGGTTATTTTAGAGCGTGATCTAGGACTGTGACTGCAGGTGCTGCATTTGTGTCCATTTAGATGCTATGAAGCGGCCTCTATGAACACTTTACCTCAGTGTGTGAGTGCGTGTTGGGAGCTGCTCAGTTCAGAGGCATTCTTCCTGCTTCTCTCCAACTTCACCGGCCTTCGATTGCACTACCTGTGTCCTGCCgatgatgatgatgagaataaagatgaagagaaaaaagatgaagagaagaAGGATGTACGGGACGCTGAAGCCACAGGGTCTTCGACCAAATCACCATCAGCAAATGCGAGCGGAGAGAAAGgtgtgtgtgtgtgtgtgtCAGTATGATTGGGTTTCCTCCTCAGCCTCAAGTCTTTGCAGCTGTTTGTTTTGATCTTTGTCGTTCGCTTTAGAGCTGAGCACACCCATGTGTTGTGGGGAACTACGTCGATGGTCTTATGGCGGCTACACTCTGTTGCATGATACAGAAGCATCACGTGCAGAGTACGCTCTGGACCTTGTTTTACCTTTTtgtggagcaggtgagtcgacacacacacacacacacacacacacacacacacacacactgaaatcttgtgactgttacaaaaccttctttcatAGACTGGCAGTCAGAGTTCGGGGGCTTCACTTGTTATGTTGCTAATGAAGAGGATGAGGAGGTTAGTGTTGTTTACACTATAAAGTGGAATTGGTTTCTGTTGGCAATACTTCATTATCATCATCGCTTTGGTTTCTTCCTCATCGCAGCTGCTGACAGTGTATCCAGAGGATAATTCCCTCGCCCTcGTCTACAGAGACAAAGAAACCCTCAAATTTGTCAAACATGTCAACCACAAAAGCTTGTCTGATTCTGACAACAGTTTTACCTGCAGATCCTTTTtTGACTTCTCATTTGTGTACTATGAAGTGATAGTGTCTATAATGGCGTCCAGACGACGTCCCGCTGACAGCGTGAAAACagacaagaagaagaagaagacgacgacgacgaGTGAGGAAACCGCTGAACTCTGTTCACTTGTAGGCGACGAGCAGGTGAAGAAGAGTGTGCAGGAGGCGTGGAGCCAGAGGACTGCTCACAGACAGGGAGATCTGGAGTTGGACTGCCACCCTTTCCCTCACTGCATCATCAAGAACTTCCTCGGCAGCGAGACATTCGTGaAGAACTTGCAGAGAGAACTGATGGAGCTCAACTTCCATGAGAAGTCAAATGATCTGTACAAATTCAAACAGTCAGACGACTTGAAGAAGAGAACAGAGCCACATATCTCGGGACTGAGGGCAGCACTGTTTGGGCGTTTCCGCTCTTGGCTTGGGGAGGTGTTGCAGGTTGCACTGGAGCCCGTGGTGGATATCTCTTGTGCCAAATATGAATACACAGATGTTCTTCTGTGTCACGATGATGAATTGGAGGGGAGGCGCGTTGCTTTCATCCTGTATCTCGTGCCTCCGTGGCAGAGCAGCGACGGAGGAACCCTCGATCTTTACACAACAGACAGTAATTTCCACCCACAGAGTATAGtgaagtcgctcgtaccctctttgaacacgctcgtcctctttgaagtTTCTCCAGTCTCCTTCCACCAAGTGTCAGAAGTTTTGACGCGGGCCAAGTGCCGTTTGTCTCTtAGCGGtTGGTTTCACGGGCCGTCATTGGAGCGCCCTCCTCGCCACAGAGGGCCCCCTATCCCACGGAGCCCACACTTACCAAGAGATGAAACATTGCTGCTGGAGTGGGTCAATCCAGTGTACTTGGACATATCTTACCAAGAGCAGATCCAGGAGGAATTTGAGGACAGCTCGGAAATCCAGCTCAAAGATTTTCTCAAGGAGGAAAAGTTCAAGGAGGTGAAAGAAGCACTGCACCTCGCTCAGATTCAGTGGACAAAGAGAGGACCACCTAATAAGAGATGCTATGAAGCGGCCTCTATGAACACTTTACCTCAGTGTGTGAGTGCGTGTTGGGAGCTGCTCAGTTCAGAGGCATTCTTCCTGCTTCTCTCCAACTTCACCGGCCTTCGATTGCACTACCTGTGTCCTGCCgatgatgatgatgagaataaagatgaagagaaaaaagatgaagagaagaAGGATGTACGGGACGCTGAAGCCACAGGGTCTTCGACCAAATCACCATCAGCAAATGCGAGCGGAGAGAAAGAGCTGAGCACACCCATGTGTTGTGGGGAACTACGTCGATGGTCTTATGGCGGCTACACTCTGTTGCATGATACAGAAGCATCACGTGCAGAGTACGCTCTGGACCTTGTTTTACCTTTTtgtggagcagACTGGCAGTCAGAGTTCGGGGGCTTCACTTGTTATGTTGCTAATGAAGAGGATGAGGAGCTGCTGACAGTGTATCCAGAGGATAATTCCCTCGCCCTcGTCTACAGAGACAAAGAAACCCTCAAATTTGTCAAACATGTCAACCACAAAAGCTTGTCTGATTCTGACAACAGTTTTACCTGCAGATCCTTTTtTGACTTCTCATTTGTGTACTATGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10637	Ofd1_CTDD	Oxoglutarate and iron-dependent oxygenase degradation C-term	Domain	Interproscan
PF13661	2OG-FeII_Oxy_4	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR019601	Domain	Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain	Interproscan
IPR039558	Domain	Prolyl 3,4-dihydroxylase TPA1/OFD1, N-terminal domain	Interproscan
IPR051842	Family	Ribosomal subunit uS12 prolyl hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12117	HISTONE ACETYLTRANSFERASE COMPLEX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006449	Biological Process	regulation of translational termination	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0019511	Biological Process	peptidyl-proline hydroxylation	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0031543	Molecular Function	peptidyl-proline dioxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-