Gene detail

Detailed information of HS02894 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02894	DIPHOSPHOMEVALONATE DECARBOXYLASE	chr4	10330706	10334032	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02894

ATGCCTGGGAATAGGATGGATAAATCAAAGACAGTTACATGCACCGCTCCTGTGAACATAGCTGTCATCAAATACTGTAAGTATCTCCTCGACTTATGTGTATCCTTGTGTCCTAGGTGTGCAGCTTTAGGAAGCAAAgATAACTAACGTTAACTCCTGTCTTAtCGACGATGATACATGTGTTATGGTGTGGTAACTTGGACTGAATAGTCTGCATTAAATTGGTGCATTCAGTGTCGGGCATATTAATATTGTTTCACCTTGTGTACAACGTACTTCCTAGGGGGGAAGCGAAATGAAGAATTAATTCTCCCCATTAACTCCTCGTTGAGCGTCACGTTGCATCAAGACCAGGTATTTAAGTCAGCAGCATTGTCATCAGACTATGAAGCTTGTGTCTGTCTTCTCAAaGTGGTGTTGCTTCTGTTCTGTCTGTTCTCCTGCCATCATGTAGAGACTCCATTAATACATATTAAAAAGAGACTAACTTATATTTGCTTCTCATgGCATGGTTATTAGAACCGCTAGTTTTATTGAGGGTGTTCAGCCATGAAaTAAaTtGAtACACTATTTATATTTCATAAATGATGTcATATATGATGTGCAGATGTTCAGGCTTACATTTCTAATATGGCTTTGATTTAGTGATACAATAGCTGTGATTTCATATACAtCCACCTTGTCTTCCTCCTTTTTGTTCAGCTGAAAACTACCACAACAGTTGCAACCAGCAGCTCATTTCTGGAAGATCGAATATGGCTAAATGGCAAAGAGGAGGACATAACCCATCCTCGACTACAGTCCTGTCTAAGAGAGAGTGAGTCCTGTCTGTTTTAGTTCTTCTGAAAAATCAGAGAGGACAAAAATTCATTATTAGTGAGAGAGTTGAGGCCCCATGTAATTTTTCTGTGTTCTGTTCTTAGTTCGACGACTTGCAAGGAAGAGGCGTAATGACGGGCACCCTGCTTTGGATTCAATGGGTTTCTCTCACAAAGTCCACATCTGCTCTGTTAACGACTTCCCCACTGCTGCCGGGCTCGCCTCCTCTGCTGCTGGATTCGCTTGTCTAGGTGTGTGTGTGTGTGtACCACACTaGAGCACTCATTTTATTGAACACTCAATTGCGTGGTGTTCATCTTAGAATACAAACTATATTCGTCTGTGTCATTTCGATTTTTCATAGTCTCCTCTGCTCCCTTTTTtTATTATTGTGTCGCAGTCTACACTCTTTCCCGcGTGTTTGACGTGGAGGGGGAGTTGTCTgGGATTGCTCGaCAAGGCTCtGGGAGCGCATGCCGTAGTATGTATGGGGGGTTTGTCCAGTGGATCATGGGACAGCGAGACGATGGCAAGGACAGTCTAGCCCAACAGGTGGCCCCAGAGACTCATTGGCCTGAGCTCAGAGTCCTCGTATTAGTGGTAGGTCAgtgtgtgtgtgtgtgtgtgtgtttgAGAGAgCGACTGATAGAATGATGGGAGTCAGTTATGTCTTGGCACTTTTGTGCTCTATTGTGAAAGTCACATGCTATTTTTTACTTCTAGAAATGACTGCATTTTGTGCAACATGTATTGCAAGCGTCTTTACCAGTACACAAAATGCACACTAAAGTTGAAAATAGTAACAAAAAAGGTAATATCACATGTAATTAATGCTTTTTTTATAGGCCAGTGCTGAGAAGAAGCCAGTGGGCAGCACTTCTGGGATGCAAACCAGTGTAGAAACAAGCCGTCTCTTAAAGGTACTCGCATTTCCTTACATTATTCAGTTTACTTACATTAATGTCAATCTGTTAAAAGTGGAGCTTATTTAAAATTACAGTGAGTTCAAAGCTTATGCATTGTTACTTACACTATTAATCTTTTCTGTGTGTGTAGCACCGGGCTGAGTCTGTGGTCCCGGGCCGGATGGTAGAGATGATTGAAGCCGTGCAAACGAAGGACTTTGCTGCATTTGCTGAGCTAACCATGAAGGACAGTAACCAGTTCCATGCTACCTGCCTTGACACATACCCACCTATCTTCTACCTCAGCAGTGTGTCTCAACAGGTCATCAGCTTGGTGCATCGGTATAACAGACACTACGGGGAGACGAGGGTGAGGAGCTTTCTGAGACCGAGCAGAACCATTGATGTCGTACACCTCTTTGTCTAGTGTTGGACAGCTGTGTATTTACATAATGCATTATTACACAACAATAAAGAAAgACAAATAAATGTTAGCTTTGATGGATTAAGAGTTCCAGTTCATAATGAAATACAGTAATAAATGGAGATTTGAACGTTAAAATCaATTTTAAATGGTGTAGTAAATGAGCAAACGCATATACATTACAAAACATACTGTACCTTAAAAGTTCTTCAGACCATTTGTCTGTGACAGTTTCTGTGTCTTTAtAAATGTGCCTTACTTCGCGCAGCGGAATTTCTGAAATGTTGTAAcgAAGATGTGAAACTTGTGGGGTGGTTTTCACTCTCTTTATATGACGGCTGCAGTCTCCCTGTTCCCCTCTAGGTGGCCTACACGTTTGACGCTGGTCCCAACGCTGTGATCTACATGCTCCAGCAGCATGTTCCTGAGTTTGTTCAGGCAGTTCAACATTTCTTCCCCCCAGAGAGCAATGGAGGACAGTGAGTTGACAGTTAATAGACTAACTAtATTTAGCTCTGACAAATACTGCTGACAAACAACACCCCAAATAATCTGGTTCCCACTGTTTACTTGTTTGTTTGCTTCAGTCAAAATTCGTCATTGATTGTTTCTTTCTTTTCTGCAGGTTTGTAAAGGGTCTTCCAGTTAATCATGTAGCTCTGTCGGAGGAGCTGAGACGGAGTATTGGTCAAGAGCCATTACCAAAGGGAATAAGCTACGTTATTAGTACTAAGGTACACACATATGTCACCACTCTGTAGCTCAGTTGTTTTATCAGTTTACTTTATTAACACCTGGAATTCAATGTTATCTGTTTTATGTTTTAAATGTCTTGATGTGTGTGTATATATTAAGGAAAAAGCAGAAAGATGTGTCTCTTACATAAATATTGTGTTGCACTACTTTAGTTGGTGATTGTGGCGCATAGTGTGACAACAAGTAGTTTCTCTGCTTCACTGATGTGATATTAAAGAGtTTATTTGACCTTCATTCACTTTTAGACTTTATTAGAAGAAGAACGTTTGTACATGTTAACACACAGACAAACTTCCTGAAGATGAGTTCTATTGTATAATGATCTTTTCTTGTTTTGTGTTCAAGGTTGGACCAGGCCCCTGTGTTGTGGAGGATCCCACTCAGCATCTACTCGGATCTGATGGGTTGCCGAAGGAAACTGTGATGCCTGGGAATAGGATGGATAAATCAAAGACAGTTACATGCACCGCTCCTGTGAACATAGCTGTCATCAAATACTGGGGGAAGCGAAATGAAGAATTAATTCTCCCCATTAACTCCTCGTTGAGCGTCACGTTGCATCAAGACCAGCTGAAAACTACCACAACAGTTGCAACCAGCAGCTCATTTCTGGAAGATCGAATATGGCTAAATGGCAAAGAGGAGGACATAACCCATCCTCGACTACAGTCCTGTCTAAGAGAGATTCGACGACTTGCAAGGAAGAGGCGTAATGACGGGCACCCTGCTTTGGATTCAATGGGTTTCTCTCACAAAGTCCACATCTGCTCTGTTAACGACTTCCCCACTGCTGCCGGGCTCGCCTCCTCTGCTGCTGGATTCGCTTGTCTAGTCTACACTCTTTCCCGcGTGTTTGACGTGGAGGGGGAGTTGTCTgGGATTGCTCGaCAAGGCTCtGGGAGCGCATGCCGTAGTATGTATGGGGGGTTTGTCCAGTGGATCATGGGACAGCGAGACGATGGCAAGGACAGTCTAGCCCAACAGGTGGCCCCAGAGACTCATTGGCCTGAGCTCAGAGTCCTCGTATTAGTGGCCAGTGCTGAGAAGAAGCCAGTGGGCAGCACTTCTGGGATGCAAACCAGTGTAGAAACAAGCCGTCTCTTAAAGCACCGGGCTGAGTCTGTGGTCCCGGGCCGGATGGTAGAGATGATTGAAGCCGTGCAAACGAAGGACTTTGCTGCATTTGCTGAGCTAACCATGAAGGACAGTAACCAGTTCCATGCTACCTGCCTTGACACATACCCACCTATCTTCTACCTCAGCAGTGTGTCTCAACAGGTCATCAGCTTGGTGCATCGGTATAACAGACACTACGGGGAGACGAGGGTGGCCTACACGTTTGACGCTGGTCCCAACGCTGTGATCTACATGCTCCAGCAGCATGTTCCTGAGTTTGTTCAGGCAGTTCAACATTTCTTCCCCCCAGAGAGCAATGGAGGACAGTTTGTAAAGGGTCTTCCAGTTAATCATGTAGCTCTGTCGGAGGAGCTGAGACGGAGTATTGGTCAAGAGCCATTACCAAAGGGAATAAGCTACGTTATTAGTACTAAGGTTGGACCAGGCCCCTGTGTTGTGGAGGATCCCACTCAGCATCTACTCGGATCTGATGGGTTGCCGAAGGAAACTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00288	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan
PF18376	MDD_C	Mevalonate 5-diphosphate decarboxylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005935	Family	Diphosphomevalonate/phosphomevalonate decarboxylase	Interproscan
IPR006204	Domain	GHMP kinase N-terminal domain	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR029765	Family	Diphosphomevalonate decarboxylase	Interproscan
IPR036554	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR041431	Domain	Mvd1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10977	DIPHOSPHOMEVALONATE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004163	Molecular Function	diphosphomevalonate decarboxylase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0016831	Molecular Function	carboxy-lyase activity	Interproscan
GO:0019287	Biological Process	isopentenyl diphosphate biosynthetic process, mevalonate pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-