Gene detail

Detailed information of HS02814 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02814	TATA-BOX BINDING PROTEIN	chr4	7122822	7125620	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02814

ATGGACCAGAACAACAGTGTACCTCCCTTCCAGGGGGGGGGCTCCCCTCAGGTAACACCGGTTTCAAGTCCATGTGGTTtATACTGCAAGGTGCCAGCTTGATTCTAATAAACATCAGCTCCCATCCTGCAGATTATTTGTATTTAATTACTATATTCACTGCCAGTACGAGAGAGGAAATGGGATTCTCAAGCCATACACTGTTAGTATTTAGATACTCATTTAATGTATGTTAAGTGGGACAAAGTGAcAAAAtATTGTGACTGGATAgTTCTGTTTTTCCCCATGCTGATTTGCGTTGAATGTGGCTTTCCTGTGCAGTCTCAAATTCATGTTTTTTTATTCTGTTGTTGTGTTATTCGTGCAGGGCTCCATGACCCCAGGCATGTCAATATTCAGTCCCATGATGCCATATGGCTCAGGACTGACACCCCAGCCTGTCCAGAACACCAATAGTtTGTCTATACTGGAGGAAcagcagaggcaacagcagctgcagcaggcacagcagGCAAACACAGGTACGGCACTCGCTACTGCCATAACCGTCTCCTCCCTTTCTAAGCCTAGAGAGATCATAATGTCATCCCTATAGTTGGTGTCCTCCACTGAACACATGGAACCATAAAGGACGATTATCatcTGTTCATTTTATAGAAAAAAAATCATTGTTTTCCAGGACTTCCTGGCACGTCTGGGCAGACCCCTCAGCTTTATCATTCCCAGGCGGATGCAGGCTCGACCACCACAGCGCTGCCAGGAAACACGCCGCTCTACGGCACGCCGCTGACCCCCATGACCCCCGTCACACCGGCCACACCAGCCTCAGAGAGCTCTGGAATAGTACCGCAGCTACAGTACGTTCTATATCCAAAGAATGATCAAAGTACCAGTTTGTCAATACAGCTAATACACACATGGTTTTCCTTTTCTGTTATGTTAATTGCCCTAGGGGAATGATGGAAGGAACAAAATTGTGCTCACGGTGATTTAGAATGTATCTAAACATGAATATAGTTGATATTTCATAGACGTCTTCACAGTGTGTGTGTTTTTTAACGACCAAGTACCGTTATTTCCATAAACTTAAATGTTCCTGACTGAACAGTTTTCTTATAAGTCTCTTACAATGTTTTCTGTCTGCTCTTTTTATTATCCTACTTTTAGAAACATCGTATCTACTGTAAATTTGGGCTGTAGACTGGACTTGAAGACGATCGCCCTGAGAGCCAGGAATGCAGAGTACAACCCAAAGGTGAGATTGCAGTGCCACATATTACTAAAGCAAACTCCTCGTGTTCAAGGataccttgatgtattacttcatcccagtatgattccattgaaggatacattagattgaattatTGCCCAGCCCTTCTTGATATATGCATGTTTCTAAACGACTACATTATCTCGAAGGACTAATGGCTGTTATTCCCGCTGTATTTTTTTGTAGCGTTTTGCTGCTGTCATCATGAGAATACGAGAACCCAGGACCACTGCTCTCATCTTCAGTTCTGGAAAGATGGTCTGCACTGGAGCCAAGAGGTcAGAATACGTTTAGTTGCCAACCTTTAATaTGCTGAAGATCGTTTTTCTCGTCGAGGAAGGATGCTGGCCTTGCCCGGTCTTTGAcgATAATGTCCTCCATCTTCTTGCCTTGTATCTGAATTATTCTCCTGCTTTTCTTGAATACAACATTTTCTTCTCCACATTATCCGCCTCGTTTCTCTCGTTAGTGAGGACCAGTCGAGGcTAGCTGCCAGAAAATACGCTCGCGTGGTGCAGAAGCTTGGGTTTCCTGCTAAGTTCCTGGACTTCAAGATTCAGAACATGGTGGGAAGCTGCGATGTGAAGTTCCCCATTCGTCTGGAAGGATTAGTCCTCACGCATCAGCAGTTCAGCAGGTAAGTTCAGTTTGTTTTATAGTCTCGTGCTGCTCAAATCATTAATCTCTTTAAAAGCACCAGCACATGAGGAACGGCTCGATGGGATTTATTCTCATCGACCTGTAGGACATTGTGTAGAGAGTTTAGAAGACTTTTCTCAACTTGAAATGGAAAGCTAATACTTGTGATGCTTATTCTAAAATAATTTGTCCGTTTCAGCTATGAACCAGAGCTGTTTCCGGGACTGATTTACAGAATGATCAAACCTAGAATTGTCCTGCTCATCTTTGTCTCTGGGAAAGTTGTCCTCACAGGTAAGACTTGACCTTCACTCATCAGTAGTTAGGATGAGACTTTACGACAGTGTCCTAATCACAACCTTGATGGAGGAGCAGTTAATATATTTTAAGTTTTCAGAGACGGCTAAAGAGACGCATTGTGCATTTTTTTGGTCTGCTTTATTACTTGGGAGACGGTATTGTCGGTTTTCCCACGGTTCAGGTCAAACATACATAGCCGACACTGCAGGTTGCTTGAGGCGCAGACTGAAATCAATATTTTAGAGTACAAAAAATAAGAATATATAATTTTAATATTAATTCCTTAAATATTTCAAAGATTAACTTGATCGACACTTTCTAAATGTCCTTTGTGTTCAGTTaCAACAGAAACAATTCCCTGTAATATTTCGACCATCTTGATGTGTCGGCCTACCACTTCAAAAAGACGGAATCAGGATTCCGTTAAAAACAAATGGAAGAACTTTGCATATCATGATTCATTCTGTCTACCTCGTtGTATTGATACGTCTTGGTTTTGTTTTTAAGGTGCCAAGGTGAGAGGAGAGATCTATGAAGCGTTTGAAAACATTTATCCCATCCTGAAAGGCTTCCGCAAGTCAACGTAGATGGACCAGAACAACAGTGTACCTCCCTTCCAGGGGGGGGGCTCCCCTCAGGGCTCCATGACCCCAGGCATGTCAATATTCAGTCCCATGATGCCATATGGCTCAGGACTGACACCCCAGCCTGTCCAGAACACCAATAGTtTGTCTATACTGGAGGAAcagcagaggcaacagcagctgcagcaggcacagcagGCAAACACAGGACTTCCTGGCACGTCTGGGCAGACCCCTCAGCTTTATCATTCCCAGGCGGATGCAGGCTCGACCACCACAGCGCTGCCAGGAAACACGCCGCTCTACGGCACGCCGCTGACCCCCATGACCCCCGTCACACCGGCCACACCAGCCTCAGAGAGCTCTGGAATAGTACCGCAGCTACAAAACATCGTATCTACTGTAAATTTGGGCTGTAGACTGGACTTGAAGACGATCGCCCTGAGAGCCAGGAATGCAGAGTACAACCCAAAGCGTTTTGCTGCTGTCATCATGAGAATACGAGAACCCAGGACCACTGCTCTCATCTTCAGTTCTGGAAAGATGGTCTGCACTGGAGCCAAGAGTGAGGACCAGTCGAGGcTAGCTGCCAGAAAATACGCTCGCGTGGTGCAGAAGCTTGGGTTTCCTGCTAAGTTCCTGGACTTCAAGATTCAGAACATGGTGGGAAGCTGCGATGTGAAGTTCCCCATTCGTCTGGAAGGATTAGTCCTCACGCATCAGCAGTTCAGCAGCTATGAACCAGAGCTGTTTCCGGGACTGATTTACAGAATGATCAAACCTAGAATTGTCCTGCTCATCTTTGTCTCTGGGAAAGTTGTCCTCACAGGTGCCAAGGTGAGAGGAGAGATCTATGAAGCGTTTGAAAACATTTATCCCATCCTGAAAGGCTTCCGCAAGTCAACGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000814	Family	TATA-box binding protein	Interproscan
IPR012295	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR030491	Conserved_site	TATA-box binding protein, conserved site	Interproscan
IPR033710	Family	TATA-box binding protein, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10126	TATA-BOX BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0140223	Molecular Function	general transcription initiation factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-