Gene detail

Detailed information of HS02573 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02573	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	chr3	24687409	24694721	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS02573

Transcript

HS02573

ATGGCGGCCGTGCGCAGCTTGATGGTGGCGGTGAAATCGGAAGGCGGCTCGGACCGCTCGTGTTCCGGCTCCGACTCCGACTCGGAcCATGACGCCCGCGAGGCCGAGCCGATGGAGGTGGAGGAAGGAGAGCTGGAGACGGAGGACGTCTCCGTCAACCGGTCCCTGAAGGAGCTGCTCCCGGTGAGTGGAGGCCCGGTCAGACCGGGCACTCGCGTTCCTCTCGCGGCCTGCGGGGGAGCGCGGCCGCCGGCAGCGAGTCGCGGCGTCAGCCCCGGAACCAGTGGCTCcGGACCGCGTCCCGGTCCTGGCCAACGGCTACTAACGACCAACGGCTGTGTGCGCGCGCTCCTCCGCTCGGTTTTACCGTGTTTACCGGCTTGTTGCTTCACACTAGTTGCTGCCTGCAGCCTCGTGCGGCCGCCGGAGCCCCGGAGGCAAGGAACGTTATCACCACTTAAACAGGACTTTAAGATAGAAAGAATAACAGTAGTTTAAAGACTCTGATGCACGAATACAGCGAATCAACCGGCCTCGCTTCAAGAGGTCCTCTGCGAGAGAGAGGTCCCCCAgggtcacctgctgcggggctctggaccggttgggtcacctgctgcggggctctggaccggttgggtcacctgcgggctgcggggctctggaccggttgggtcacctgctgcggggctctggaccggttgggtcacctgctgcggggctctggacctgtagggtcacctgctgcggggctctggaccggttgggtcacctgcgggctgcggggctctggacctgttgggtcacctgcggcggggctctgtaccggttgggtcacctgctTAGTGTGTGTGCGTTTGGCTGCTATTAAACTCCTTAAATTATATCTAAAATACCAGTTTGATGAGGAGGAGGTGCAACATTTTCGTTTAtcttttcaattttcgtttccttttattatttcttcataaattaattcttaaatgtaatatgccctgctgtgttattgcatatttgtaaactaatgcttACAAATGTAACGTAACACCTGGTCAGCTTCAGGCTCTCTTGAGCGTGACGTCACACATGTGCGTTGACCAGAAGGCCTGTTCCCTGAACGTCCCTaaagtcaaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggacacaagccggcgctacgagAACAAAGGCGGAGCCTTCATCACCGGCATcGACGTCAACTCAAAGGTATGACGTCACCACGGTTCAGCTCTGGTAAACTTGTTGTTGTTTGTGTGGACGCAAAACACCAGAAGATAGATACAAATAACAGAAGCGTGTTTGTATTGCGATGTATTTGACTCAAGGTCTGTTTACCTGAACATTCATGACGTCACACCTGGTCTGCAGCCAATCAGGCTCCAGAATCAGACTTTTTAATTAAATCTATCTCAAACGGAATATCCTGAAAAGTGCACATTAAAAATACCGTTAAAAACCAAGGAGTCTTCATATAAATATAATATGATGCATAGAACACAAACTCTAACAGTGTGAAATGTAAATGTCCTTTTGTTTTCATGATCTATATGTTAGTACTTCTATATATTCATCTGTAGAGTTTACCACGGTTATTTAACTCACTGTCTTAACCCTCAACTCGAAGGCGTTGTTCTGCTCTGCTCCCCAATGTGGGGAAACTCATCTTAATGAATTCTCttgttcaggcttcttcttctaagggaagagttcattgctcgtgatgtgttcgaggaccgtctgaaagatgacgatctaacgatagcggtgttctccgcagcttctCTCTAAAACCAGCGCGTTGTTGTCTTCATCAGGAGGCGATCGAGAGGAAAGAGAAGCGAGCGAGACGCTTCCACTTCACGCCGGAAGAGAACGTCGAGCAGAGGAGCGTCATCATGGACAgAGACACCATGAAGAAGGGTGGGCGCtcttcttctgtggtgctcatgacctgtacccgtcttcttctgtggtgtttacaaactgcaaccgtcttcttctgtggtgtttataacctgtacctgtcttcttctTCTGTGGTGCTCAGCCATCCCCAGCCTGCGTATGGAGGCTCTCTACGTGACGGGAGTGGACGACATGAGCACTCAGGACATCTTCGGCTACTTTAAAGAATATCCTCCAGCGCACATCGAGTGGATCGATGACGcctcctgtgagtcacgcacgcacacacacgcacgcacgcacacacagacacacacttgtgaagggggaagtattcagaccctttCCTGCAGTAGAACTCTGAACTGACTCCAGATCAGCGAGGGCCGTGTGTCTGACCGCCCCCCGTCTGTTTCCTAGGCAACGTGGTTTGGCTGGACGACAACACGTCCGTCAGAGTGCTCGTCAACTGCAGCCGGGCCCCCGACCCCGAGGCCCCGGAGAAGGAGAACCCTGAGACGGAGACTCTGGAGACCCCGGAGGTGGAGAGCGCCGCTCAGCCGGTCGAGCAGAGTAAAGGTCGGTCCGCGGGTCGCCGAGGGTCggaggatgaggaagaggaggatgaagagggcgaggttgaggaggaggacgaggccgtgaagaagagcagcgaggaggtcgaggtgaaggacgccgacgagcagaagccgaagcaggaAGCCGTCGTTCAGGTAGATAGCTCCAGCTgagtcgccgtggtaactgccgagtcgcggtaactgccgagtcgccgtggtaactgccgagttgcggtaactgccgCGCTGCTGGCTGCAGGTGGAGGACCTGACGCTGGCGGAGAGAGAGTCGCTGCTGAGGAACGACCTCCGGCCGGCCACCCGGCCCTTCAAGGGCAACAAGCTGCTGCTGCGCTTCGCCACGCACGGTGAGGGCTGAggggaccggggcaggaccaggtctgggggacccgggtctggacccggtctgAGTTAACCATGTCCCTGTGTGTGCAGACGATAAGAAGGAGCTGGGCGCCGCTCGGCGGAGCCGCTACTACATGAAGTACGGGAACCCGAACTACGGCGGCATGAAGGGGATCCTCAGCAACTCCTGGTGAGCTCCTCTTGTCCCCCAGAgatcaggaggaggaggaggaggagagatgatgatgatgatgatgaAGGCCCTCCCTCTCTTCAGGAAGAGGAGGTTTCACAACCGTCGGATTCAGAGAGACGTCATCAAGACCAAGAAACCTCTGATCGGAGACAACCTGGGACACACCCCCCCCTACACACACCGCCACTCAGGTACCCTCCTGGGAACAACACAACTACACACACTGAACACAACAACCACACACCCCAGATCAGGAAGTCTTGATGTGACGACTTCTTCTTCTCTTCCCCCCAGCCGACCTGGTCAACCTGCCCGAGGAGCCCATCAaggaggaggaggaggaggaggaagacgaggacatggaggaggacgaccgggtggtggagtacaaggagcgaggCCAGAAGGCCAGCGGGGAAGGCTCCCGCCCGGCGGGGGCGGGGCCGGGGCTCCGCAGCCGCGCCGGGCGCTCGCCGTCCCCGTGGTCGGAGTCTGACGAGATGGACTACGACCTGGAGCTGAAGATGATCTCCACGCCGTCGCCCAAGAAGAGCAAGAAGATGACGATGTACGCCGACGAGCTGGACGGCCACCTGAAGAGCATCCGGTGAGGAGGCCGCTCCGGGGTCACgacctccggccgggtctcgtgacctccggctgggtctcACGGGGAACTGAACTCTGTGGTCTTGTGAGCAGGAACCGGGTCGGGGAGTCCGGATCCCAGACCAGAGCCAAGTCCACGTCGCCGCCCCCCCAGGTCACTGACGTCAGGCAGCTGCTGGAGGAGAAGAGAAAAGGACTCGCTCAGCACAGAGGGCCCCCCCTGGTGGCCCCCAGCGGGAAGTCAGGTctgactgtctgactgtctctcataccgactgtctgactgactgtctctcataccgactgtctgtctgactggctctcataccgactgtctgtctgactgtctctcataccgactgtctgactgactgtctctcatgccgactgtctgactgactgtctctcataccgactgtctgtctgactgtctctcataccgactgtctgactgactgtctctcataccgactgtttgtctgactgtctctcataccgactgtctgactgactgtctctcataccgactgtctctcataccgactgtctgtctgactgtctctcatacagactgtctgactgactgtctcgcataccgactgtctgtctgactggctctcataccgactgtctgactgactgtctctcataccgactgtctgactgactgtctctcataccgactgtctgtctgactgtctctcataccgactgtctgactgactgtctctcatgccgactgtctgactgactgtctctcataccgactgtctctcataccgactgtctgtctgactgtctctcatacagactgtctctcataccgactgtatgtctgactgtctctcatacagactgtctgactgactgtctcgcataccgactgtctgtctgactgtctctcataccgactgtctgtctgactgtctctcatacagactgtctgactgactgtctcgcataccgactgtctgtctgactgtctctcataccgactatctgactgactgtctctcataccgactgtctctcataccgactgtctgtctgactctcataccgactgtctgtctgactctcataccgactgtctgtctgactgtctctcataccgactgtctgtcgctcataccgactgtctgtctgactctcataccgactgtctgtctgactctcataccgactgtctgtctgtctgtcgctcataccgactgtctgtctgtctctcataccgactgtctgtctgactctcataccgactgtctgtctgactctctcataccgactgtctctcataccgactgtctgtctgactgtctctcataccgactgtctgtctgactgtctctcataccgactgtctgtctgactgtctctcataccgactgtctgtctgactctcataccgactgtctgtctgactctcataccgactgtctgtctgactctctcataccaactgtctctcataccgactgtctgtctgtctgactctcataccaactgtctctcataccgactgtctctcataccgactgatgtctgacactcatgccgactgtctgtctgactgtctctcataccgactgtctgtctgactctcatgccgactgtctgtctgactgtctctcataccgactgtctctcataccgactgatgtctgacactcatgccgactgtctgtctgactgtctctcatgccgactgtctgtctgactgtctgcctgtctgtctgcAGATGTACGGCAGCGGTTGGGAAAGCGGCGCTACTCCCCTGACAGACAGCGCTCGCCCTCTCCCGTCTCCCCCAGAGACACGCCCCCCGCCAGGGAACCAATCAGAGATGTGCACCGCCGGTTGGGTGTGGCCAGTCAGGACAACCGGAGCGTCAAAGACAGGAAGTCAAGTACGATGAggaaacggtcgcatttttctctccctctcctccccatgaccttcccttccctgcttggctcctatcgtcatgtcttgtcttgttttatacttgagagactctctccgcatcgctcttcgaactaaaaaccatggacctgatcaactggtctcttaacgcaattgacaccatcttctcgacgagaagctcgcgtccgggggaacctgcctgtcctgccgggacgtgggttgctggttacacgatggacgcgttggggaagtggcgtgtcgtgtgcctagcagccctttccgtggaggacatagaagacatctacctattcggaactttgattacaggatttctgctgtttggatttggtgctgccctggcttatcggaaaattaaggaaacggtgacagccgttaaaagccccctaaggctgcccgacatgattgacgcgttgggcagagttgttggcactcagactgtgtcattaaaccgccagaatgacaacatcgtggagaagctgacggctctgcacatgaaattggatcgatttgaaatcctattgggaaatgggaggaaaatggaggaatagtagttgcgcaaattgaaatgcagctactggaagaccaaacaatcccaatcttatctgctttcggctccctctaccaggacgggccttggccaaggccgttactggaacaacaactcccccgaagatcactgaagcgagactctctctcattcccttcccccgatccacagacacctgtggttgttttctccccaggacccttcaaggctatctccatggcaacgaccatcttgcggactgagaactctgtccgttgtggcctgggggaggatgacataccaggccactcacacacgaacttcaacacactgatatgcattcactacccccccatcccacgccttcgcctgcttcttacccccagtgtgaccggacggggctgtggctggcgccgtgaaaggctgctggaccggctggctgcttgtcggtgctggttaccttctgcccccaatggatgggcttagatcacccagtctttggattacctccgctccccccttcctacttgttgcaagtcatgtctaagatgtatgtgctaaggtgtttttttcctgctcccacactgtacccctctcggggcatagtcggggggttgttgttgtttttttctcgccttcttccctcatgttatgctgtaatctttcatccaccctttcttgcaatttcgatgcttttgtacctgtactctagcaaacgacaaataaaCCATCATCATAATCATCCATAACAGGAATTATAGTAGAAACATTCTCTTTATGAATGAAGCTTCATCACAGAGCTGATGTTTGTTTGTTTgtttACAGGCGAGCTGTGGAGCAGACTCGGCTCTAGTGACGACGCCGGACGTCACGAGCGCCGATCGAGCAGCCGGCAGGCGGAGCTCTTTTCCTCCTCggggaagggaggcgagggcggcggcagcaaggcacgaggagacggagagggggagaagaaggaggaggaggagaagaaggaagaggaggaagacgaCTCCACGCTCCAGAAGGTCTGGGGCGCCATGATCAAACAGAAACAGGAGCGCATGACTCACGAGGTCAAGAAGAGCCGGCTGGACAACCTGCCGTCACTGCAGATCGAGATCAGCAGAGACAGCAGCGACGACTCCGACGCCATGGCGGCCGTGCGCAGCTTGATGGTGGCGGTGAAATCGGAAGGCGGCTCGGACCGCTCGTGTTCCGGCTCCGACTCCGACTCGGAcCATGACGCCCGCGAGGCCGAGCCGATGGAGGTGGAGGAAGGAGAGCTGGAGACGGAGGACGTCTCCGTCAACCGGTCCCTGAAGGAGCTGCTCCCGgacacaagccggcgctacgagAACAAAGGCGGAGCCTTCATCACCGGCATcGACGTCAACTCAAAGGAGGCGATCGAGAGGAAAGAGAAGCGAGCGAGACGCTTCCACTTCACGCCGGAAGAGAACGTCGAGCAGAGGAGCGTCATCATGGACAgAGACACCATGAAGAAGGCCATCCCCAGCCTGCGTATGGAGGCTCTCTACGTGACGGGAGTGGACGACATGAGCACTCAGGACATCTTCGGCTACTTTAAAGAATATCCTCCAGCGCACATCGAGTGGATCGATGACGcctcctGCAACGTGGTTTGGCTGGACGACAACACGTCCGTCAGAGTGCTCGTCAACTGCAGCCGGGCCCCCGACCCCGAGGCCCCGGAGAAGGAGAACCCTGAGACGGAGACTCTGGAGACCCCGGAGGTGGAGAGCGCCGCTCAGCCGGTCGAGCAGAGTAAAGGTCGGTCCGCGGGTCGCCGAGGGTCggaggatgaggaagaggaggatgaagagggcgaggttgaggaggaggacgaggccgtgaagaagagcagcgaggaggtcgaggtgaaggacgccgacgagcagaagccgaagcaggaAGCCGTCGTTCAGGTGGAGGACCTGACGCTGGCGGAGAGAGAGTCGCTGCTGAGGAACGACCTCCGGCCGGCCACCCGGCCCTTCAAGGGCAACAAGCTGCTGCTGCGCTTCGCCACGCACGACGATAAGAAGGAGCTGGGCGCCGCTCGGCGGAGCCGCTACTACATGAAGTACGGGAACCCGAACTACGGCGGCATGAAGGGGATCCTCAGCAACTCCTGGAAGAGGAGGTTTCACAACCGTCGGATTCAGAGAGACGTCATCAAGACCAAGAAACCTCTGATCGGAGACAACCTGGGACACACCCCCCCCTACACACACCGCCACTCAGCCGACCTGGTCAACCTGCCCGAGGAGCCCATCAaggaggaggaggaggaggaggaagacgaggacatggaggaggacgaccgggtggtggagtacaaggagcgaggCCAGAAGGCCAGCGGGGAAGGCTCCCGCCCGGCGGGGGCGGGGCCGGGGCTCCGCAGCCGCGCCGGGCGCTCGCCGTCCCCGTGGTCGGAGTCTGACGAGATGGACTACGACCTGGAGCTGAAGATGATCTCCACGCCGTCGCCCAAGAAGAGCAAGAAGATGACGATGTACGCCGACGAGCTGGACGGCCACCTGAAGAGCATCCGGAACCGGGTCGGGGAGTCCGGATCCCAGACCAGAGCCAAGTCCACGTCGCCGCCCCCCCAGGTCACTGACGTCAGGCAGCTGCTGGAGGAGAAGAGAAAAGGACTCGCTCAGCACAGAGGGCCCCCCCTGGTGGCCCCCAGCGGGAAGTCAGATGTACGGCAGCGGTTGGGAAAGCGGCGCTACTCCCCTGACAGACAGCGCTCGCCCTCTCCCGTCTCCCCCAGAGACACGCCCCCCGCCAGGGAACCAATCAGAGATGTGCACCGCCGGTTGGGTGTGGCCAGTCAGGACAACCGGAGCGTCAAAGACAGGAAGTCAAGCGAGCTGTGGAGCAGACTCGGCTCTAGTGACGACGCCGGACGTCACGAGCGCCGATCGAGCAGCCGGCAGGCGGAGCTCTTTTCCTCCTCggggaagggaggcgagggcggcggcagcaaggcacgaggagacggagagggggagaagaaggaggaggaggagaagaaggaagaggaggaagacgaCTCCACGCTCCAGAAGGTCTGGGGCGCCATGATCAAACAGAAACAGGAGCGCATGACTCACGAGGTCAAGAAGAGCCGGCTGGACAACCTGCCGTCACTGCAGATCGAGATCAGCAGAGACAGCAGCGACGACTCCGACGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10309	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019416	Family	Nuclear cap-binding protein subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16291	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000340	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-