Gene detail

Detailed information of HS02506 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02506	DNA REPAIR PROTEIN RAD51 HOMOLOG 4	chr3	22737839	22747254	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02506

ATGGTGGTCTTAAGAGAAGGAATGTGCCCGGGACTGGATGACGGCTTAGTTCGTGGCCTGCGTGCTGCTGGCATTAAAACAGGCGAGTTGTTTGTTTGCTTCACGTTGATGACAGAaacaaaacaacatcaacaataacaacGCGCCTGTGTTTCTGTGTTTCTCGTGTTCTCAGTGGAGGACGTGGTCTCGTCTGACATCGAGGAACTCGCTCAGAGATGCTCGGTGTCATATACGGTATTTATCACTCATTACGTACTGTGTGTGCGGACAAGAGCATGCGCAATGACACTTGTGCAATATTGCATTTGAATTGTTGTGCAGTTCGACCTTCTCCTTACCTCTTCTCTATAATTCACAATATCTCTTTCAATATCGTGCTCAATATTACTTTTTTCTTTTAATTTCCATTTCTTGTGTTTCATCTTTTGACTCTtttactattttagatgtgtgtgcgtgcatgtctgtctctgtgtgtgtgtgtgtctgtgtgcacgcacaatgtccaataaaagggattctgaggtaaagcacaagtcgcgtgtcgaaaataatgaaatgtatctatttagaagtaaatatatatgtatatatattatgcagttgtatatatatgtacatgtataGTGAGTAAAAACCAAAAGGTTCATTGTCATCTTgaaccggagagagagagaagagaggagaggaagagaggagagggggagaggaagagaagagaggaagagaagaggggaagagaggagggggagaggaggagagagagagagcacagatttgttcctttaaccattttttcttcttttttGAAGATCATAAATCATGTTTTACACCAAACTTTTTTTTTAAAGAGATACAAGAGTGGAATTATTTCATGTATGTGACCCAGAAGAGATCCTCACAACAGACCTGTGCGTGTGGGCGGCGAGGCCGGAGCGCTGGGAGAGAgCAACACGTCCTCCGTATGAACATGTGAAGGGAAATAAACTTGAGAGAAGTGtTAAATATATATATCTTTTCACAGGCTTGTTCTTCTTTTTTTtCCGTCTTGCCGGCTATCAAACCGTCACCGTAGATCCCTCGAAGGCCTTCTATGTTCCGCCTCGTTTTCATTTTGAGTTGATAGTCTTTTTCATGAGGTCACCCCCCCCCCCCCCcTCcacacacacccacacacacacacacacacacGAGGAtGTCGTCTGACTGGAAGCAGCCGCCTCTCTCCTCgTGGAGCGGCTCTTCTTTTCTATCTGTATTTCCTGTTCTTCTTCTCTTGATGGAACACGTCCTCGGAGCTGAACAACGTTTCCACTAATTGTTTTTATATTTTTCCCAAAACATGAAGTCATCTCTGCCAAGTCCTCCGTACCTTTTTAGTAACCATAGCAACAAGTAGGAtCCAAACTTCTCCAGTCAAACAATATCCAGTCCTTATTTCACCATTTGTTATTGTGTTTAAGCCGGGTCTCTCTCTCTCtgttgatgtcatgatgatgtcatgatgatgccatgatgacgccatgttgccatgatgacgccatgttgccatgatgacgccatgttgacgTGTCCATCTCGTTCCAGGCTCTGTTCTCCATCCGCCGCGTGCTCCTCGCCCAACACGCCGCGTTCCCCGTGTCgGGCGCCGACCTGTACGAGGAGCTGTTGAGCTCCACGGCCATCCTCTCCACCGGGAACCCCAGGTGAGGACCCCCCCcAGGGACCAGCCGAGGTCGCcACGGCAGCTGCATGAAAACAAACCTACAGAGCAGAAGTCCAGCAGAGCAATGGAGTGTTTTCCGCTCGTAAACAGCCTGAAGTGCTTCTGATGTAGcCCAGAAAGCTTGGAGACGAAGCCGCTGGACCTCACAGTTCTGCATGTGTTCCTCACTTTGGAGGAGGGTTATCTCCTCGACATTAAACTCACTGTTGCAGCATAATTAATGACCACAGGTGGCTGGTTTTCATACATTAGTCGGTGCTTTTGGATTAGTTCTGAGAAATCAGAATCAGCCATGTGAGTAAAAGGCGGTGTGGGTTTCTTTTtgtgtgtgtgtgtgtgtgtgtgatgtgtgtgtCTTGGCTGCCCTCTGCTGGTGAGAAGATGAACTGGCGCTCTTCCCTGGCTTTTTGGTTTCATGCAGACAGAATTTTAAAAAGCACATAGTTTCACATTGATTAGACCCAGCTGTGTGAGATCAGGGGGTCCAGTGTTACGCTGaagaacacaaggataatgatgtatttatttgtgtatatctatatctatatagatatatatattgttttaatacatatatatatatatttgtatatatatatatatattgttttaatatatatttatatatatacaggactgtctcagaaaattagaatattgtgataaagttctttattttctgtaatgcaattagaaaaacagaaatgtcatgcattctgattattacaaatcagctgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactctaaaatcctatctcatcaaattttaatatttcctcagaccaagtaaaaaaaaagatttataacagctgagtgtttgtcaaggctcaggaaacccttgcaggtgtttcgagttaattagacaattcaagtgatttgtttaatacccgactagtatactttttcatgatattctaatatttagagataggatatttgagttttcttaagctgtaagccataatcagcaatattaaaagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgtttttttaattgcattacagaaaataaagaacttcatcacaatattctaattttctgagacagtcctgtatatacacacatatatatatatgtatgtgtgtgtgtatatatatggctgactaggacactttCTCAGGATTAGGCACCAAAGGCACGGGGGTCAGATTCGTCCaattggacgccgtcatcttggcgtcacccgtctgttccgaagtctcgagtttgggcgttttgaccgtcgccatcttggtttctttgcaaccagtgaatgaaagcggcctatctgGACTAAATATTTACCaaatgaacaacacgctgaactgaagaagacttcaaacaggagcttgagaccatgaactcatattGTAAATAAGGTAATCTtAAATGTCCAAAAGTAAATGATCTATAAATGGGAAATGGcAACATTTAAAGTATATTCTTTTCTACACGAGAGAAGTAGAGTCACTTTTTCTCATTCATTATTaGTATAATCAGGGTAAATAATAATGTAAATAAAGAGCCGAATAATGAAATCAATGCAACTGTAAGCGGTGATGAACGTAGACATCTGACGGTGTCGGTTACGCACCATAGCAACCAGACAGCcGTCCCCGAGGGCCTGTTTGATTGTGAACTTCATTATTTATTAATGGAAGCTATTGATATCCGCTTAGCTACGATAAAACCACCacatatatatttatttaatatatataaataatgtatatataaatatatatttatatagatagaaatatataaataaatacatatatatatatttatatatataaaaataatgtatatatatatttttatatataatgtatatcaataatgtgtatatatatattatatataaataatgtgtgtgtgtatatatatatagatataatgacggcctgtcaTGAGATATTGCACAATACAAACTACGTCTGAAACCATTATATTGTAATGACTGCCATGAAGGTCCGGTTCATATCAGACCGGGTTAGTTTTATTCATCCAGGTGTTCCGGGCGAGCGGCTCGTTCAGCCGGCGGCGTTCTGAGTCACATGTTTCTCTGGAGGAGGAGCCGACCTCCCCGGTCTCATGAGCTGACTGAGGGAAAACAATATTCATTTGTAATCTTTTCTCTCTCTTTCCTGTGAGGGAACGTCGGCCGACTGAGACGAAGCCAACGTGACTCAGTCTGGACGCTTCAGCTGCGAGACGCACTGCTTTTCTTTTTGGGGGGGGgCATATTATTTTAATATGTTTTTCTTTTCCTTCtTTGATGTATATGCACAGTGTAGGACGCCCGGGGAGGAATAGAGAGAGAAGGTGATGGACGTGTTTTTGTTCTTATTTCAACCAACTTAATAGAAATGTCGAAATCCAAACGGCTCAAAGAAAACCTCCCGAACGCCACCGAGTGTGTCGAGTCTAAACTCCTCACGACCTTTCCTGAAtGGTCATATTGTTCAGTTCTGAACTAATTATAGTTTATTTCGACGTCTCTTTAATAAAAAGATCATCACGACTTCTATGGAAACAACTGCAACCTTCATTCCATAAACCTCCATCGCAGCTCAAGTCCCAACAAACGAACAAACTATTATCATGAATGACGAATGGCACTCGTTTTCATTTTGCTCGCAGACAAACAGAAAGGTAACAACAACAAcaaACAAAGCGTATCAGATGTTCCAGCTGCTGCGGTGATCTGTCAAACCCACGATAAGCAGCGATGATGATGATgGTTTATGGCCGTTCGTCAATGTGcGGAGCCTTCGTCGTATGTTTGTCAGCGCCTGATTGGCTGATGACACGTTGGCCGTGTGGCGGCGGCTTGTTGCCGGGCGATGAGtGTTTGAAAGCCATTAAAAAGGAGACGCCACGTCTTCTGTCAAACTCTCATTAGAAATGTTTTTTCACGACGGAGCTGCAGCCGCGTGACGCCGTTTATCTCCAGTGTTTCAATGAGAGGGAAAAGTTACGGGGAAGGAAACGTCTGTCAAACGGGGATAAAGAATATAAACGATGCGTTCGTGtTCTTGAACGCTGCTTTTCGTGTTCTCCAAGCGTGGGACGTTGGAACATTTTCCACgTTTTCCCgTCGTATTTCAAGTGGaCGGCTTGTACCCggaggggggggggggggggAATCGGGTGGAGCTCGGGGAAGATTTACCTCTGCAGCTGCAACGAGTTGAACCTAACGAGGTGAATACAGATTTGAgCCTCTGGACTGAATCATAAAGCAGGAAGTCACCTTCCTCGGGAACACAAGATGCATTCAAATGCATCACAAACAAATAaATATATcCTGGTGTTATAACTTTATTCGTTTGTTGGAAATGTATGTGAATTGGTACCACATTTCAACACACACaGAGAGATGGATGAAAtTATTTTGATGGATTCATTTAGAAGGAGGCGGCTCGaCTGAAATTGGGAATCTGGAGTCTGGAAGTTCTGTTTTTCTCGCGCTCACTCGACTGCATCGCTCTGCACTTTAATTGTTTGCCGCGTGCAGCTGTGAGTGACGCGTGGCTGCTGGTCTCCTGCAGCCTGGACGCTCTGCTGGACTCGGGCTTGTACACCGGGGAGCTGACGGAGCTGTCGGGGGGGCCGGGCAGCGGCAAGTCTCAGGTGAGCTGCTCCTCCCTTCCCTCTCCATCACGTCAGCCTCTTTTTTGTATTTTCTTTTCCTTGTCGCCTGTacataaagagacataaataaatgaagaaatacagaaatatttatttaatgatgtcccgtttagggagaacttatatttaacttatatttatttattcctttatttatttattaatacatttattcaagcatttatttatttattcagaaatatttatttaatgatgtcctgtttagggagaacttatatttaacttatatttatttattcctttatttatttattcaagcatttatttatttattcatctatttatttatatattcattcatttatttattcctctatttatgtatgcatttatttatttatctatttatttaaatatttatttaagcatttattcctgtatttattcatgcatttatttatttatacttaagtcattttatgtcccccCCGGCGCTGGCCTCCTCTCGTCTTCCAGGTGTGTTTCGGCGTCGCCGTGCACATCGCCCACCGACTCAAGCAGAGCGCCATATTCATCGAtACCACCGGGGGGCTCGCCGCCGGCCGCCTGCTGCAGATGCTGCGAGCGGAGACGAGTAACGAGGAGGAGCAGGTGAGCTCTTAGAGGATGATGTAATATTCGTAATGCACACACGGTGTGTGATGTAACCCCACACACACACACACAGATGGAGGCTCTGCAGAGGATCCAGGTGTTCCGCGTGTTCGACGTCTTCGCGCTGCTCGACTGTCTCCACGGCCTCCGCGCCGGCCGGCTGCAGCAGGTTGGTGTTCAGCTTCGGGGAGCGAGTGACGCTCAGTGATGTGAGTCgtgtcacgctgtgtcacgttgtgtcacgctgtgtcacgctgtgtcacgctgtgtcacgttgtgGCGTTAGGCGCACGGCGGCGGCTCCGTCAAGGCGGTGATCGTGGACTCGGTGTCGGCGGTTATCTCTCCTCTCCTGGGAGGAAAACAGAATGAAGGTGAtCTCTCTTTCTGGGAGTACAGCatgtgtttatttgtataaatatatatgtgtgtgtttgtatatatatttatataaataaatataaatgtgttaatgtatgtataacgcgttaatctatgcgattaatttggccgcgattaacgcactaaaatattttaacgcaattaacgcaactttgtttacttccggtgtcgttgacgttttttcactcccctgagtgtcaaaccgcggcagtacggtttgacacggattccttttttaaaacaattatttctccgcgaaaatacggagcagaaatcagtttaaactcgtggatgaatcagtcgagtttcctcctgctctccttcctcccgtctgctcctccgatacacagagacaaatgtgcgattaattagttcgttttttttaatcgattgacagccctagtatatatatatatatatatatctttgtgtatatatatatttttttgtataaatatatatttgtataactttacatatatttgtgtgtatatatatatttgtataataaatatattagggctgcaacaacgaatcgataaaaatctattattaaaatagttggcaacgaatttcattatcgattcgttgtgtcgcgcgattattacggcgctcaataagtcacggagtataaagaatgttgagttgagcgcagagcggcgcaggagaaacaagagcggagcgagagggagacgagagacggaacgctgcgttgtgagagccaatcagcgctgagctgctcctcttgatgaatctaattggctgctgctgctcacgtggcgctggatgcggaagtcattcacgtagtcggagacattcacggagctgagtgcgcctacgggtgacgttatgaacccagacaccaggcgctacatgtcacgacgtgtgtggcatttccacaagaggataacgagaaaacgtggttatttattccgtggcggatagcagaaaatattttccatggagaaaggcaacggagataagccacgactgctgtgagctgcgcgtgcagacgacatttaacggagcggagcagcgcgcgcctgatcgctaatgaagtatcgatactaaaaatatgctaaatcacatcgtgtttaacgacgggtactttgttagtatcgctacaccgcagcgtgacagcagcagatgtagcggactaacattcaagctaacctaacttcccaaacgctgtggacatctgaacgctgattggccgagacgcgacacgtcccatcaaagatgttttattgcgaagagcaccacttcacattttttccgcgtctcactgcaatctcaacggcagcgggccaagtgaaaaaaataataaatcgtaacgcgtctctgatattgttcagggggccacatggggaccactgctcaggagaggaaagctgtcagtctgtttgtgacggttcatcaccatcgtgaccagtggatctccaggacctttccatgactttaaaccaaatttccatgattaaacattttgtgaaaactctgtctatacgtgacaaagtgagaagatgtagtatttaaactaactgagaattccaaaagcatactgtgtaaattaaaatttcaattaaaaaaatgtgcattaattttccaaatcttttgggatttaatttttttcaattacttttctaggcctgctaatagccatttaaaaactccatgacttttccaggttttccatgaccgtacggaccctgttttgaataaagtgtcgaaaattaaagtttttttttaaaaatccgattaatcgatagaataatcaaccgattaatcgattatcaaaataatcgttagttgcagccctaAAATATATATAtTAAGTGTTCTGCTTAAATGAAAGCATGACCAACTCTGAGAAGCGTGTTAAATAAAGACGTTgttAAtAGAAAGCAGTTTCTTGTCCTCCACACCTGAGCAGGTCGACTAGAAGTTAAACTTCTCCTcAAGCTGCAGTTTGACGATCAAGAGAATCCGGATCACATCGTGTTGTCGTGTCTTCTGCTCTGAACGACCTCCTGCAGGCATGTCCCTGATGATGCAGGTGGCGGGAGTCCTGAAGACGCTGGCGAAGGACTTCAACGTGGCGGCGCTGGTGAGGACGCCGCTCTGAACAAACACTTCTTGTTTCACTTTGATTTGGCCCTGAAAACTAAATCAATgTAAAAAaCAAACAAcCAAAAAGGGTTTTAaTTATTGAAAATCGCATGTGTAAAAAAAAATGTAAGTTCCAAAAaGTTAGTTCAGGTATATGCTGAACACGGTGGGGGGGGGGGgTGGTCTTGGGCCTGCAGGTCACGAACCACGTCACGAGGAGCGGCGGCGGCGAGGTGCAGCCGGGCCTCGGCGCGTCGTGGGGTCCCGTCCCCAGGACCCGGGTCCTGCTGGAGCGAGCGGAGGACGCaGCGGACGGCGGCCACTCCAGCATCCGCACGGCGACGCTGATCAAGTCCTCGAGACGGGTACGACCAGAAGGGGGCGGAGTCTGACACTTTTGAAGCTTCGGGTTTCGCGTTTtatttatatatattcatattatatattgtatatataatatattgtatatattatatatattcatattgtatatatttatatatattcatattatatattatatatattcatattgtatatatttatatatattcatattatatattgtatatattcatattgtgtgtatatatatatatacaatatgaatatatatataatatgaatatatataaataaaatatatgtatttatatatatatatatagcgtaactccagtaagtgaacagcGTCCTCTGCCTCCCAGCCGTGTCTCCTCAGAGAGGAGTTTGACCTCCGCCGGTGGAGTCGCTCGGGGGACGAAGCGTCCTCGTCTTCGGGGAAGAGGACGCTGGAGGAGACGGATTCCATGGTGGTCTTAAGAGAAGGAATGTGCCCGGGACTGGATGACGGCTTAGTTCGTGGCCTGCGTGCTGCTGGCATTAAAACAGTGGAGGACGTGGTCTCGTCTGACATCGAGGAACTCGCTCAGAGATGCTCGGTGTCATATACGGCTCTGTTCTCCATCCGCCGCGTGCTCCTCGCCCAACACGCCGCGTTCCCCGTGTCgGGCGCCGACCTGTACGAGGAGCTGTTGAGCTCCACGGCCATCCTCTCCACCGGGAACCCCAGCCTGGACGCTCTGCTGGACTCGGGCTTGTACACCGGGGAGCTGACGGAGCTGTCGGGGGGGCCGGGCAGCGGCAAGTCTCAGGTGTGTTTCGGCGTCGCCGTGCACATCGCCCACCGACTCAAGCAGAGCGCCATATTCATCGAtACCACCGGGGGGCTCGCCGCCGGCCGCCTGCTGCAGATGCTGCGAGCGGAGACGAGTAACGAGGAGGAGCAGATGGAGGCTCTGCAGAGGATCCAGGTGTTCCGCGTGTTCGACGTCTTCGCGCTGCTCGACTGTCTCCACGGCCTCCGCGCCGGCCGGCTGCAGCAGGCGCACGGCGGCGGCTCCGTCAAGGCGGTGATCGTGGACTCGGTGTCGGCGGTTATCTCTCCTCTCCTGGGAGGAAAACAGAATGAAGGCATGTCCCTGATGATGCAGGTGGCGGGAGTCCTGAAGACGCTGGCGAAGGACTTCAACGTGGCGGCGCTGGTCACGAACCACGTCACGAGGAGCGGCGGCGGCGAGGTGCAGCCGGGCCTCGGCGCGTCGTGGGGTCCCGTCCCCAGGACCCGGGTCCTGCTGGAGCGAGCGGAGGACGCaGCGGACGGCGGCCACTCCAGCATCCGCACGGCGACGCTGATCAAGTCCTCGAGACGGCCGTGTCTCCTCAGAGAGGAGTTTGACCTCCGCCGGTGGAGTCGCTCGGGGGACGAAGCGTCCTCGTCTTCGGGGAAGAGGACGCTGGAGGAGACGGATTCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08423	Rad51	Rad51	Domain	Interproscan
PF21794	RAD51D_N	RAD51D, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013632	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan
IPR020588	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR047323	Domain	DNA repair protein RAD51 homolog 4, C-terminal	Interproscan
IPR048943	Domain	RAD51D, N-terminal domain	Interproscan
IPR051988	Family	Homologous Recombination Repair RAD51 Paralog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46457	DNA REPAIR PROTEIN RAD51 HOMOLOG 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005657	Cellular Component	replication fork	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0033063	Cellular Component	Rad51B-Rad51C-Rad51D-XRCC2 complex	Interproscan
GO:0042148	Biological Process	DNA strand invasion	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-