Gene detail

Detailed information of HS02486 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02486	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	chr3	22067288	22070158	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02486

GAGATCAACCGGCTGGACGACGACAGCAGATTGTGAgaaaaaactttagcggaaaaacctttaacggaaagcctttagcggaaaagcctttaacggaaaagcctatagcggaaaaacctttaacggaaaagcctatagcggaaaaagctttagtggaaaaacctttaacagaaaatcctatagcagaaaagtctataacggaaaaacctttaacggaaaacttttaacggaaaaacctttaacggaaaagcctataatgaaaaaagcctataacaaaaacctttagcggaaaaacctttaacggaaaaatcctatagcagaaaacctttaaggggaaaacatttaacggaaaaacctttagtggaaaaacctttaacggaaaaacctttaacggaaaagcctataatgaaaaaagcctataacaaaaatctttagcggaaaaacctttaacggaaaaatcctatagcagaaaacctttaaggggaaaacctttaacggaaaagcctataatgaaaaaagcctataacaaaaacctttagcggaaaaacctttaacggaaaaatcctatagcagaaaacctttaaggggaaaaccgctaacgaaaaaaaaacgataacggaaaaactgcaaaaggaaaaaaacgctaacggaaaaacctttaacagaaaaaaaacgctaacggaaaaatctttCGGGGACGAGTTGGTTGAGTTTCACATCTTTAGTTTCATGCCTTTAAGCCATTTTCTCAAAACAAGTTTGTTCTCAGACTCTGATCCATAAGTCTCCGTCAGCAGCTCTCACATCCACCAAACGTAACACtttttacagagcggtttgttcagatatccctcatagcctgatttatataaacatttctaactaaatacatggagaagatcgtcagtttctctgctttacgcaacaaagagatatcaaaatgttcccctgtaaaaatcttttcctctaatattttagcaataatgaaaCTTTTATTGTAACCCCtCCCCCCCCGACTCTCTCTCCTCCCAGTGCCTGTGTGAGGATGCTGGACCGGTTCGACCTGGGGGGTCACGTGTGCATCGTGTTCGAGCTGCTCGGCCTCAGCACCTTCGACTTCCAGCGGCTGAACGGCTTCCTGCCGTTCAGCGTGGAGCAGATCCGACACATGGCCTTCCAGATCTTCACAGCCGTTTGCTGTGAGTCCATccccccccccccccccgcaccccGTGACCTCTGACCCCTGACCTCAACGCTATCTGGTCATATGTTACGAACCCAAAGGGAATAGCCGTAAATTACGACAACTACCTTTATCAACAAcaaaagtgggattttgtggataagtgtacaagtgtgtgtgtgtgtgtacgtgtgtgtgtgtgtacgtgtgtgtgtgtgtgtgtgtgttccacagtcctgcatcgtaaccagctgacCCACACAGACCTGAAGCCGGAGAACATCCTGTTCGTCTGCTCCGACTCTGACCTGCAGTACAACCACGAGACGGTAAGCGCTTCGTGAACCGCAAAGAAATGTgtCGTTGCAAGGttcgccacgtagtgaggcagtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgttagaagtgtgaggagaggaagctgaggagTCTGGATGTGAAGGTGGTGGATTTTGGCACCGCCACATTCGACCACGAACACCACGAATCCCTGGTGTCAACGCGACACTACcgagctccagaggtcatactgggtacacacacacacacacacacacacacatatgcacggacacacacatgcacagacacattattactaaattggaccatttatgtctcatgatcCGTGCACAGATCTGGGCTGGAGCCAGTCGTGTGACGTGTGGAGCTTGGGATGCGTTCtcatggagttttaccTGGGACAcccactcttccaggtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacgcacacacagaaacaggagtgagtcgttctatccggcctgtttcagacccacaACAGTAAAGAACATCTGGCCATGATGGAGAGAATCCTGGGACCCATTCCCGTCCACCTGCTGAAACAAACCAGGTAAcatcctctgtgggtccccccccccccccctgagtcctcctggaccacttgggacctgggccatcctctgtgggtcccccccccccccgagtcctcctggaccacttgggacctaggccatcctctgtggtccccccgagtcctcctggaccacttgggacctgggccatcctctgtgggtccccccccccccccgagtcctcctggaccacatgggacctgggccatcctctgtgggtccccccccccccccccccccgagtcctcctggaccacttgggacctgggccatcctctgtggtcccccgagtcctcctggaccacttgggacctgggccatcctctgtgggccccctgagtcctcctggaccacttgggacctgggTCTGTTGCTAAACaTTCTGCCGACCCGTGTGTTGTGTGTAGAAAGCAGCACTACGTGCACAACGAGCGACTGCGTTGGGACGAGCAGAGCCCCCCCGACGACCACGTCAGGAAACACTGTAAACCTCTCAAGGTACGCGgAcCGCAATCGGCCAATCAGCCGCGGCCGCGAGTTTTAACCCCGTGTCGTTTCTCTCGCTGCAGCTCATGCAGAGGACGAGCGAGGAAGACAGGCAGCTGTTCGACCTGCTCGGCTTGATGTTGGAGTACGACGTCTCCAGACGGATCACGCTGGAGGAGGCGCTGTGGCACCCGTTCTTCAGCCCGCTGAGGGCtaagaagcagcgcagcGAGATCAACCGGCTGGACGACGACAGCAGATTTGCCTGTGTGAGGATGCTGGACCGGTTCGACCTGGGGGGTCACGTGTGCATCGTGTTCGAGCTGCTCGGCCTCAGCACCTTCGACTTCCAGCGGCTGAACGGCTTCCTGCCGTTCAGCGTGGAGCAGATCCGACACATGGCCTTCCAGATCTTCACAGCCGTTTGCTtcctgcatcgtaaccagctgacCCACACAGACCTGAAGCCGGAGAACATCCTGTTCGTCTGCTCCGACTCTGACCTGCAGTACAACCACGAGACGaagtgtgaggagaggaagctgaggagTCTGGATGTGAAGGTGGTGGATTTTGGCACCGCCACATTCGACCACGAACACCACGAATCCCTGGTGTCAACGCGACACTACcgagctccagaggtcatactggATCTGGGCTGGAGCCAGTCGTGTGACGTGTGGAGCTTGGGATGCGTTCtcatggagttttaccTGGGACAcccactcttccagacccacaACAGTAAAGAACATCTGGCCATGATGGAGAGAATCCTGGGACCCATTCCCGTCCACCTGCTGAAACAAACCAGAAAGCAGCACTACGTGCACAACGAGCGACTGCGTTGGGACGAGCAGAGCCCCCCCGACGACCACGTCAGGAAACACTGTAAACCTCTCAAGCTCATGCAGAGGACGAGCGAGGAAGACAGGCAGCTGTTCGACCTGCTCGGCTTGATGTTGGAGTACGACGTCTCCAGACGGATCACGCTGGAGGAGGCGCTGTGGCACCCGTTCTTCAGCCCGCTGAGGGCtaagaagcagcgcagc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051175	Family	Dual specificity CLK kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45646	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0018108	Biological Process	peptidyl-tyrosine phosphorylation	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-