Gene detail

Detailed information of HS02396 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02396	CYTOTOXIC AND REGULATORY T-CELL MOLECULE	chr3	17385876	17388359	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02396

TTAAAGGACAAGCGCTACAGCATCACCAAACTGTCTCTGTCAGAATTTACCATCAGTATTTCCGGCATCACCTTCAAAGATGGAGGCATCTACACGTGCTCTCAGTATGGCGCTCACACAACAGAGAAGAAAGTGGAGGTGACAGTGTTAGGTGAGGATAATTGATTGAATCCCAGATTGCAATATTTTTAAAGCCAGCAAACGATGTGACGTTGACAAGGATTTGTACTCCCCTTTACTATAGGACTCATAGCATTTCAGAATAATGTCATAACATCTGCTCTGGTGTTGATTGTTTTAAAGGGCATCCCAAAATGGAAGTAGCAACGAATGAAGGAACGTTTGTCATAAAATGCACTGCTGAGGGAAACCACTATCCTCCCCAGATCTCCTGGAAGTTGAATAATGGGCCTGAAATTATTGGTACGTTTGTAATAACTGAAGACATTGACTTAGAATAAACTGCAAAATACACTTTAATGAATAAATGAACCAAAGTGAAGGATATAAAGTAAAATAACATGAATCTGTCATCTTTAGCTGCATGTTGGTGGTGTTGCATCTTTGCTCACTGCTATTCTGAATCTATACTCTACCTAAAGAAGCTGTTTTGCTCTAAAGAGATGAAATATCACATTCTGATTCGGATGTCATTCAATCTTTTTGGTCCTAGTCACTGTATATCTTTGCATTTGCACTTTTGAAGATAAGACTGAGCCCCCACAGAGTGGGCTCATCTTTCTGTGACATCTATTCACCTATTAGAAATGATACTAATGACATCTGGCCTATTCCACAGCTCATGGCCAAGAAGAAGTTAGAACATATGATGACAATAAATATGTCACAATGGAAATGCTACATGTTCGCCCAGTGGAGAAGAGGATCACTGTCAAATGCCTTGTTCGCCATCCAGCTTTGCACTCACGACCTTTGATGAACTTTGTCAAAATTGGACCAGACTGTAAGTACAATTTATTCACTTCCAACTTTCACTAGCAGATAAAATACGTAAAAATAGCGCTTGCATTAACCAAAAtGTGTTTACTTTAAGTACCTCTCCATAAAGGCGGCAATTTGAGGAACAGTTACCACATAGTTATGTCATCACAAAGCATGGAAAGCCCTTGAGAGGGGTTTTTTCCCACCATGACACTGTCCACAGCACCAGGCTGTGAAACTAACCAAAAAACAAAACAGCCCCATGTGATTTCTTCTTCTGTGTGCTGTGTAATGAATACATAAATAAATTGTTAAAAATGTCAGCAAAGGTTTTTTTTCACTGAGACTGTAATcCcTCTCCGTCACAGCAACAAAGCCCCGGGGCACAACGACGACCAGTTCCCCAACAACCCAGCCTAGAGGGTCAACGGTGGTGCCAGGAACAACAACCGTCTTCAGACACAGGAGAACAACAGTGTACCTTCCAACCAGAGACGTTAAGGGGCCTTCATCAGAGAGCTCAATAACGTTATCAGCTGCTCCCTCCAATCAGCTGTTTTCTTCCTTCGAGCCAAAGATAGTCACAGCACCCAGTGGACGTCCTCTGGTCCCTGTAAAATCCACTGGCTCACATCTCAGCACCGGAGGTGAGATGCTCGATTTGTATTTATCTGTCATTTTTTTGTTATGTGACAAAATATTCCACATCGGATGATATGCAGACTTGAGATGAGACAAAAGGAACAGTCCAAAATAATCTTTGAACAACAAAAACAAAACAAAATGTATAATGTAACATTCAAGTAGTAGATTATGGCATGCCGggaaacatttcttaagcactggcaaaagtggtgcaactatgtcacagataaatggcctgactgtatttctttactctatggaaaatgatttctccctgctttatttatagttttgttactatggtattgtttttgtttctttatttgtatatgtggttgtttgttttttacttctctatacatagaatctgaaaaattgaaatatgtgtatgtgagattctgaacactaataaaatataaatTTAAAATGTTTTTTAAAAGGATTATGGCATGCCACAAaCTCAAAATTCATCAAATATAATAAGAATGTCGAAATACatttagtttgatcactttttatttattcatatatttttctctttctattatttTTCTCATAATTAAAGCACCTGAATATCAAACGATGAAAACTACAGCTATTTCAGCTTTCACATTGCAACTAGATCAGGCTATagttcaattcagttaattttgtatagcccattTTTTGTAGTCATTAGTTTTTTTaAAACTTGGGCTAACTGCTAAACAAACTATCAAAATATACATGAATGTATTATTGACAAGCCCTCGGCTCGAATTTAACATGTAATTTATTACATTCTGCACCTTTAATATATGTACCATTTATGAAAACATTTTTCTCATGAGGCTTATTCAACCAATTACAGATGACTCAACAACATCTGTAGTATTCGGCTCGACCAGGAGGAGGAATTTAAAGGACAAGCGCTACAGCATCACCAAACTGTCTCTGTCAGAATTTACCATCAGTATTTCCGGCATCACCTTCAAAGATGGAGGCATCTACACGTGCTCTCAGTATGGCGCTCACACAACAGAGAAGAAAGTGGAGGTGACAGTGTTAGGGCATCCCAAAATGGAAGTAGCAACGAATGAAGGAACGTTTGTCATAAAATGCACTGCTGAGGGAAACCACTATCCTCCCCAGATCTCCTGGAAGTTGAATAATGGGCCTGAAATTATTGCTCATGGCCAAGAAGAAGTTAGAACATATGATGACAATAAATATGTCACAATGGAAATGCTACATGTTCGCCCAGTGGAGAAGAGGATCACTGTCAAATGCCTTGTTCGCCATCCAGCTTTGCACTCACGACCTTTGATGAACTTTGTCAAAATTGGACCAGACTCAACAAAGCCCCGGGGCACAACGACGACCAGTTCCCCAACAACCCAGCCTAGAGGGTCAACGGTGGTGCCAGGAACAACAACCGTCTTCAGACACAGGAGAACAACAGTGTACCTTCCAACCAGAGACGTTAAGGGGCCTTCATCAGAGAGCTCAATAACGTTATCAGCTGCTCCCTCCAATCAGCTGTTTTCTTCCTTCGAGCCAAAGATAGTCACAGCACCCAGTGGACGTCCTCTGGTCCCTGTAAAATCCACTGGCTCACATCTCAGCACCGGAGATGACTCAACAACATCTGTAGTATTCGGCTCGACCAGGAGGAGGAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08205	C2-set_2	CD80-like C2-set immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013162	Domain	CD80-like, immunoglobulin C2-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR053096	Family	Cytotoxic and regulatory T-cell molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47118	CYTOTOXIC AND REGULATORY T-CELL MOLECULE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002355	Biological Process	detection of tumor cell	Interproscan
GO:0002860	Biological Process	positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	Interproscan
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008037	Biological Process	cell recognition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-