Gene detail

Detailed information of HS02364 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02364	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	chr3	16096861	16102581	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02364

ATGGCGCTGTATGAATCCAGTTATCAGACTGTGGGTCTGGTGGCAGTCGGCCACTCCCTGCCCCCCAGCGGCATCACTGAGATCAAACTCCACAGCAACATGTTCATGTTCCGAGCCAGCCTGGACTTAAAACTCATTTTCCTGGACACGAGGTAGGACGGTCACTTTACTGAGCGAGCGGATAAAAAGAGGAAAGCTATGGTATCATGATATGTTGATGGTCACTGTGGGAAAATGTACATAAAAGAAAAGAACATTTAATTAAAAATACACCCTTCCTACAACGCATGCACACGGTAACAATATTTAAATATGTACATAATATACATTAGTTAAGTGCCGTATTGTTAAGTGAACATTGGAATGCACTTGATCAAATCAACCCCCTGACTGTAAGCTTGTGCCCTCTCTCCTGTGTGCTGGAGCCAGGGTGGCAGAGCTGACAGGCTATGAGCCTCAGGACCTGATAGAGAAGACTCTCTACCACCACGTCCACGCCTGTGACGTTTTCCATCTACGCTATGCTCACCATATATGTGAGTCCTCCAAATCCTTCGTAAGACTTGGGTGGTAGAGTATATAGAAGTGAAGTAACATATCAACAATGATGAATGAACAATGTAGTGACTGAGAAAAACTGCCATCTTGAGCCCCCTAACATGACTCACAGGCCAATACACAAAGTTTGGTTCCAAGACACAGGCAACGGTCAAAAGCAACGTCTAGAAAGGGTTAGGGAGAGAATCACCAATCCATGGATCAGGTAGGCAGAATAAGGCTGGGATCTATAACAGGTGAATAGGTATGACGGGGTGATGGGTATGGCCGGACAAGAGGTTACTGCAGGGCAAGGGGGGATGGCTGGATCTGAAATGACAGGAGAGTTAGTAGCAGGTTAAACAGAGCAGAAGGAATGACCAGCTCTCCTTGTCTGGCTCAAAACCTAAGCAATGACCACTCTGAGGATCCTGTGTGTCTGTCTTGAAGTCCGAGCAGGAGCATGCGCAGCATGTGCGGTGCATTCTCCAAAGGCTTCTGAAGAGGCCATCAAGGCCAAGACAGGTGAGGGTTATTTAGTCTCAGAGTGGTCATAACTTGGGTTCTGCCAATGTTTGTTGAAGCCAAAGGCATGACCAGGTTCTCATGAATGGGAGGATCCCGGGGGCAGCCAGTTTATTTAAAATGACATCTGACCAACTCACTATTATATAAGTCATGAGAGAAAGAACGAGGATCCCActtctagagttctgtggtgaatagcttttctgagtgggagaccagacactcgctgtcccatttggcccagtgccagacccaaccagtaagcacagagatgatgtaggctaccctggatcactcagatgggaaggaggaatgctggagctagaacattgggttagaaaaaactgagaagcccttggagctcttAACTTGGGTTTTTGAGTTGAGAGCTGTAGTTCAGCCGCAGAAGGTGGATTcaggttcctgcagcagatgtgacgcttttcatttgtgatgttgcagaagaatggcaatgatcaaagcggcagtctgtttggttgtgatccaccctcaacaggggtagtgtattggtgtaagtgtgtgtgtgtgtgtgtgtcagtgtgtgtgactactgtgtggagcctgtgtggtgtgtgtgtgggcaggccctgatgcagagcaggaatgtcctgtcagagcgtcagtacaagaactctgagtgatctaggaaagaaaggaaatctcagtctctctgcctcagtctagctgttgttggtgcctgccctctggtgtctgtgttgtgtggtgttgtttgtccttcctccgtgatgggtgagttgctctccctggctctcacacctccactgtagtccacgtgcccgccagtggtgagtactgtctgttgttgttgcctcccagtagagtagctcctttgtttcttccctggtgtcctgggatggctggctgtcctggcaccagagtgatcagcaacacagaccagcaaggccttctcgtcctgaggtcttctcaatccaggccctcaccttttgtactcttgcctgcctgctggtgtgatctgtgtgtcacccaccatgtgtgtgtgtggtgatgtggactggagtgttatactgtctctcgtagggtagggggatctcctcttcaggtagtagtcgttgaggtgttgtgtggtgatggtcaccctgttgtaccctgtcaggacaagaggatccaagcacatggggagggctgttgtccagggctgttgggtcaggtccaggttgccagaggggccagtgttcagtgaactataggatcagaacagcagtctcacctctgcccctggtgctgcagccctgagagtgtggtgtgcagtaccagtatcacatgtgtgtgtggacagtccagcatggggctgaggagcctgcaggggaggagtgagctggggggagtgtcgggagacatgcccaccagtccacacctggcctggcggtcaaagtgtcaggagtgaggggggcaggggggtgtcagtgatcagcttgatatggtactcagtctggaggcaaggaggatgatggtgttgaggtgacatagtgggagggttcagacaccagcccccctctggctgtcagatgagagtggtcggtgtgcttgggtggggagacagcatcacacctctgtcacagagagtgtgaagcagctgtgaggagagccatggagggaggtgaacaccagcaggagctcagcacagatggcctatcagtggcacgagtactcatgacccatgccgtgaggcacacggtcggggtcacatcaaccagcattccctggctggcagacaaaaggacgtggatctcttgagcaaggcggggggacgatccccagccaggagaggagttgaatattgtggtgaacactggagctagctggttagcacaggtcttcatactaagtggaggAACCACTACCGGGTCCGGTACCATCACAGAGAGATGAATCCGTTCACAGATTCCAGAACTGGTGGAAATGGCCTTTTATACTGCAAGACTACTGAAGGAAATGGGGTTACTGCTGGGCGGGGGCGAGTGGCTTGATCTAAGTGAGAGGAGAGTTATCATACTGCAGGTAGAACAGAGCAGCATACCTACGAGGAGCTGGGGAAGTCGAGACAGACGAAGTAAAGTTGCAAGGTGCCGTAACAGAAGATTGCAAACATTTGGGAAGACCTGAGGACAACCGAGGAAACAGATGCCGATGGTGCTGTCATTATGGGCTATATAGCACCACGATCATATTTCATACTGAACATACAGTTCATTTTGTCTGCATTGCATTGTGGTCTACTTTATAAAAATGAAATGACAATGCAAAAAAGAAAAAAGACTTGTTTAGCTGTCCCACTCATTGCTCTCATGTCGTTTTCAAAAAGAACTAAAACTAAAAACTTACCATTCATTCcctgctgagcaccaaacagactcatctagagactcgctgctgaacatattggtgcatttagcagctgaagagccagatatttactccaggagttggtagagaccaaaatagagttaaaagagagagaGAGAATTTTTTTTAGAACTCTTCGTTGACAATGTGTTTTGTTCACAGCATATTTATTCTGTGGCAGAAAAACTGTTATTGCAGGTTTTCAGTTCTAGCCCATCGATGAATGTTCCTTTTGAATGATGCACAACGCTGGTTATAAAAAGAAGCCCTTCCTGAATACGTCTACGGGGCTGATTCGGCCATGTTTCTCTTTGATCCTGATCTCTGTGTTTCCTGTAGTGCTGGTGAAGGGGCAGGTCACCACTAAGTACTACCGCATGTTATCAAAGCATGGAGGCTGGGTGTGGGTGCAGAGCTACGCCACCATCGTCCACAACAGCCGCTCCTCCAGACCTCACTGTATTGTCAGTGTGAACTACGTCCTCACGTGAGTGAGGGCGCCTTGCCCACATGTATTCTCCATGTGAAACCTTGAGTTAAACCAGTACAACGATACACAGTGCCCGCCTATTTGCACACAGAGACGTCGAGTGCAAGGAGCTTCAGCTGTCTGAAGACCAGAGTCGAGCCACCAAGCCGTGTCTCGGTCTTTCTTCAGTTCAGGACCACCGCAAACAACTCAGAACCAAAGCAGTCAAGATGAAGACCAAACTTAGAGCAGCTCACTATCCTGAGGCGGGCCTTCCTCTTGGCTTACTGAGTAAACAAAAGGTGATTGTTTGCACACAGTTATGATGGAAAATGTTTTGCATCCCCATCTTGAAGAAAATAATGTAATCCTAAGCATGTCATTGAGAACGTTAGATAGTTCTGCTGTAAATTGTATTTCTGTACTTCCAATGGTTTTGTCATTGGTGACCGTCTCCATGCTGTTGTGTTGATGGACAGCAGCAGGCTGCGAGCCTCTTCCAGCCAGACCGTTCCAGCTGCTCCCCACAGAGGGGGCTGTGGAAGGAGAGATCCCCATACCCACTGACCTCCTGCAGGGAAAGGAGCTCCAGCTTGAGCCCTGAAGCGGACCAGGTGTCCTGCGGCCCCACATACAACCTGACCCTGCACTACCCTTACAATCACCGGCATCTGGACGCTCAGAGCCAGCTTCCTAGCTCAGGTCCGCCCCCCCAGCTGGCTCAGCAGATCCTCGGCTCCCTGCACAGCAGAGGGTCTGTCGGTTGCAACATCAGCATCCCCCCAGCACCAAATAAGTACACAGGTACACTCTTTAAGTTACACAGTTACCTCCATTAAGACACATTCAAAGGTAATTGGACATTCTGtaataataataataattcagatttctagagctcttttatgaatacccaaagacgcttgacgcTGTACACATGTTTCTTGCTCTGAATGCTGCCCTCCTCTCTCTCAGTAGAGTAGACCTTCTGGTGTAATTTCAGCTCGTGGTATTTGTTGTCTTCATCAGGCCCAGTGCCGGCAGCGGACCGCAGGCACCCTGATGAGATCTACCATGATTGTTCCAGCAGCACAAACCCACTTTCTACCAGCCGACTGAAGGCAGAACCCTACGAACATTACAaGCTTGTCCACGGCGAGCTGCCGGAGGTTTGTCCACACCCCGGTCCTCACGCCGCCAAGGACGGTAAGCGTTTAGGCCAGGAGGTCCGACATAACTCCAGAGGTGCCGAGGGACCTCGAGGCGACCGGGCCCTCGCCTGCCCGTTGCTCAGCGACCTGGTCCTGGGTAGAGCTGAGCACATCGGCTCGCTGCACGGCGCGGGCCAGCCTCTCCCCGTGCAGATGGCGCTGGAGCAGAGGAGGCGGCTGTGTATGATGGAGGCGCCCTACTGCCCCCCGGCCGCAGCGTATCCACCGCCTGCCGACGGCCTACAGCAGCACGGAGCCGCTGCAGAGCTGCAGCCCAGGTCGGCTGAGGAGGACAGGAGAATGTTGATCGGTATGGGGGTCGGGGTTGGACTTCCAGCCCAAGCCCCGTACGTGTCTTTGAACTTTCACACGGTCCTGGGCAAACACGGGTCCCTCAAGGCCCCCGCTTTTACCACACTGAGCCACATATCAGACGGCCACGGGTACCACGGCAGAGAGACGGCTTCTTACAGCTGCAACAGCCAGAGCCCCAGCTCCGGCTCGTCGCCCGAGAGCCACAGAGAGATCCCGCATTACATCGGCACATCCGTCATCATCACGAATGAGAGGATGGCGCTGTATGAATCCAGTTATCAGACTGTGGGTCTGGTGGCAGTCGGCCACTCCCTGCCCCCCAGCGGCATCACTGAGATCAAACTCCACAGCAACATGTTCATGTTCCGAGCCAGCCTGGACTTAAAACTCATTTTCCTGGACACGAGGGTGGCAGAGCTGACAGGCTATGAGCCTCAGGACCTGATAGAGAAGACTCTCTACCACCACGTCCACGCCTGTGACGTTTTCCATCTACGCTATGCTCACCATATATTGCTGGTGAAGGGGCAGGTCACCACTAAGTACTACCGCATGTTATCAAAGCATGGAGGCTGGGTGTGGGTGCAGAGCTACGCCACCATCGTCCACAACAGCCGCTCCTCCAGACCTCACTGTATTGTCAGTGTGAACTACGTCCTCACAGACGTCGAGTGCAAGGAGCTTCAGCTGTCTGAAGACCAGAGTCGAGCCACCAAGCCGTGTCTCGGTCTTTCTTCAGTTCAGGACCACCGCAAACAACTCAGAACCAAAGCAGTCAAGATGAAGACCAAACTTAGAGCAGCTCACTATCCTGAGGCGGGCCTTCCTCTTGGCTTACTGAGTAAACAAAAGCAGGCTGCGAGCCTCTTCCAGCCAGACCGTTCCAGCTGCTCCCCACAGAGGGGGCTGTGGAAGGAGAGATCCCCATACCCACTGACCTCCTGCAGGGAAAGGAGCTCCAGCTTGAGCCCTGAAGCGGACCAGGTGTCCTGCGGCCCCACATACAACCTGACCCTGCACTACCCTTACAATCACCGGCATCTGGACGCTCAGAGCCAGCTTCCTAGCTCAGGTCCGCCCCCCCAGCTGGCTCAGCAGATCCTCGGCTCCCTGCACAGCAGAGGGTCTGTCGGTTGCAACATCAGCATCCCCCCAGCACCAAATAAGTACACAGGCCCAGTGCCGGCAGCGGACCGCAGGCACCCTGATGAGATCTACCATGATTGTTCCAGCAGCACAAACCCACTTTCTACCAGCCGACTGAAGGCAGAACCCTACGAACATTACAaGCTTGTCCACGGCGAGCTGCCGGAGGTTTGTCCACACCCCGGTCCTCACGCCGCCAAGGACGGTAAGCGTTTAGGCCAGGAGGTCCGACATAACTCCAGAGGTGCCGAGGGACCTCGAGGCGACCGGGCCCTCGCCTGCCCGTTGCTCAGCGACCTGGTCCTGGGTAGAGCTGAGCACATCGGCTCGCTGCACGGCGCGGGCCAGCCTCTCCCCGTGCAGATGGCGCTGGAGCAGAGGAGGCGGCTGTGTATGATGGAGGCGCCCTACTGCCCCCCGGCCGCAGCGTATCCACCGCCTGCCGACGGCCTACAGCAGCACGGAGCCGCTGCAGAGCTGCAGCCCAGGTCGGCTGAGGAGGACAGGAGAATGTTGATCGGTATGGGGGTCGGGGTTGGACTTCCAGCCCAAGCCCCGTACGTGTCTTTGAACTTTCACACGGTCCTGGGCAAACACGGGTCCCTCAAGGCCCCCGCTTTTACCACACTGAGCCACATATCAGACGGCCACGGGTACCACGGCAGAGAGACGGCTTCTTACAGCTGCAACAGCCAGAGCCCCAGCTCCGGCTCGTCGCCCGAGAGCCACAGAGAGATCCCGCATTACATCGGCACATCCGTCATCATCACGAATGAGAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-