Gene detail

Detailed information of HS02342 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02342	HOMEOBOX PROTEIN	chr3	15738742	15740798	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02342

ATGATGTCCTACATAAAGCAACCCCATTACACCATGAACGGGTTAAATTTGCCTGGCCCCGGAATGGATGTGCTGCATACAACCATCGCTTATCCATGTGAGTATAAACTGTTATTGATTGTTCTTTTTCTTGATAGTATTTGTCTCCTTTGCTGCTCTTGTCATTTCGAGTCTTATTTACCCAAAATGATGCGTAAAGACGCGCAaGACGCGCGCAGCGAGAGTACTGAGAGGATAAACAAAAGGGTATTGACAAAAGGTCTGGAAAATAAAAATGAAGAACTCCAATGTGCTATAAAAGTATCATTACTACATGTATTAACGAATTACTGGCAACTTTTCGTTCTGATAAATTGAGGATTTAAAGTAAAAGTGACTCTTAATTTAGGCACGAGTCTGCTgacgtATATATGATGTTTATTACAGATACACTACATTAATATGCAGATACAACGAGCCGATTGAAAGCCTCGACAGGCAGACAATCGGCGCGCACTCCTGAATTCAGTGTCGGTCAAGAATTCGACATTTATTTAATTTATTTgTTTACTCTTCTCACTTTTCCCCCTCGAGGGTTCCTAAATGTTCTCACACTGATGAATATAAATcTACTAAATTCTCGTGACTGCATCTAATAATTTCTCACTTTATTTCTCCTGAAACAAATGCGTCTATTTGTCTGTTTATGACTTTAACTGTACAAACTAAACGTAATATAACTATTCAAAGAACTGGAAAATATATGTAAGCAGCAAATACATGTTGTCTTTTTTTtGGTTAAAAGCAGAGAAAACAAATAAGGATTATAAACAGCATCATGATGGACTGAGGTTTCCATTTATATTTGTATTTGTTGTCATCCTCACTCACATAGAGGCAGAAAACAAACAGAATAATCAGTTAGATGGCCGCCAGTAAAAATAAAATAAATCATTGGTCTGAGTTGTGCTCATAATTCAGGTCATCTCTCTAcGCTGCTGCTAGAATAATAATCCCCTTTTCTGACTCTTGGGGGGgCAGCCACTCCCCGGAAGCAGCGCAGGGAGCGcACCACCTTCACCCGgACaCAGCTGGACATCCTGGAGGCGtTGTTCtccAAGACCCGCTACCCGGACATCTTCATGAGGGAGGAGGTGGCCCTCAAGATCAACCTGCCCGAGTCACGTGTGCAGGTaCCGGAGAAGTAGGCCACCACCAAGATGGAGGCCGTGCTGTCCTTTGTGGCTCACTGACAGTGGGATTAGGCATCTCAATACAATCCAAGATGTTTATGCTATATCCAGCATCTTTTTTACAAtACACAACTCTTTGGTTATAAGTCCTACTTGTCCTTTCTTACGTTCGGTGCCATGCAGCTCAAATCTTATGTCACTCAAGAGACTTGTTTTTCTTTCCTAACATCTTCTTCTCCGCGCCTCCAGGTGTGGTTTAAAAACCGGCGtGCCAAGTGCCGTcagcagcagcagcagagcagTGGCCAGTCCAAGCCCCGCCCTCCCAAAAAGAAGGCCTCCCCGTTGCAGGAACCCAGCATCCCTGATCCTGTCCCTAACCCGTCTGGTTCCTACAGCCCCTCCTCTGTCCAGtccggccccggcctggttccgagctccagcaccggGAACACCGGCGTGTCCATCTGGAGCCCGGCCATCTCGCCCCTGCCCGACCCCCTGGCCTCCTCCTCGGCCCCCTGCATGCAGCGGCCCTCACCTTACCCCATGAGCTACGGCCAGCCGTCGGCCTACACCCAAGGCTACGCCAGCACCACCTCCTACTTCACCGGTCTGGACTGCAGCGCCTATCTGTCCCCCATGCACTCGCAGCTGTCGGGCACCGTGGGCGCCCTCAGCCCCATCGCCGTGCCCTCGATGGGGGGCTCCCTGAGCCAGTCCCCGGCCTCGCTGTCCTCGCAGGGCTACAGCACGGCCTCCTCCCTGGGCTTCACCTCTGTCGACTGCCTGGACTACAAGGACCAGCAGGCCTGGAAACTGGGCTTCACCACAATGGACTGCCTGGATCACAAGGACCAAAACTCCTGGAAGTTCCAGGTCCTCATGATGTCCTACATAAAGCAACCCCATTACACCATGAACGGGTTAAATTTGCCTGGCCCCGGAATGGATGTGCTGCATACAACCATCGCTTATCCATCCACTCCCCGGAAGCAGCGCAGGGAGCGcACCACCTTCACCCGgACaCAGCTGGACATCCTGGAGGCGtTGTTCtccAAGACCCGCTACCCGGACATCTTCATGAGGGAGGAGGTGGCCCTCAAGATCAACCTGCCCGAGTCACGTGTGCAGGTGTGGTTTAAAAACCGGCGtGCCAAGTGCCGTcagcagcagcagcagagcagTGGCCAGTCCAAGCCCCGCCCTCCCAAAAAGAAGGCCTCCCCGTTGCAGGAACCCAGCATCCCTGATCCTGTCCCTAACCCGTCTGGTTCCTACAGCCCCTCCTCTGTCCAGtccggccccggcctggttccgagctccagcaccggGAACACCGGCGTGTCCATCTGGAGCCCGGCCATCTCGCCCCTGCCCGACCCCCTGGCCTCCTCCTCGGCCCCCTGCATGCAGCGGCCCTCACCTTACCCCATGAGCTACGGCCAGCCGTCGGCCTACACCCAAGGCTACGCCAGCACCACCTCCTACTTCACCGGTCTGGACTGCAGCGCCTATCTGTCCCCCATGCACTCGCAGCTGTCGGGCACCGTGGGCGCCCTCAGCCCCATCGCCGTGCCCTCGATGGGGGGCTCCCTGAGCCAGTCCCCGGCCTCGCTGTCCTCGCAGGGCTACAGCACGGCCTCCTCCCTGGGCTTCACCTCTGTCGACTGCCTGGACTACAAGGACCAGCAGGCCTGGAAACTGGGCTTCACCACAATGGACTGCCTGGATCACAAGGACCAAAACTCCTGGAAGTTCCAGGTCCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03529	TF_Otx	Otx1 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR003025	Family	Transcription factor Otx	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013851	Domain	Transcription factor Otx, C-terminal	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45793	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-