Gene detail

Detailed information of HS02335 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02335	ACETYL-COA C-ACYLTRANSFERASE	chr3	15341481	15349627	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02335

ATGTCATCCAGTGGACTTTTAACCTTGCGCACGCAATTTTGCAAACGCCTGGTAAGTGAAAGCGTGTACAAAACATGTTTGTGTTCGTGTGTTTTACTCCTGCGGAGGGACGCAGTAGCGACGGCCCGTCTGTAAACACTGGGCCTCAGGTCGAGCGGCTCGGCTCAACTTTTTGACTCGTCCTTGACCAAAAAGTAGTGAACACACCTGAGAAGTGTCTCGAGCGCTTTAGTGTTCTCATGTGCCCTTTGTTCTCAACACTGTAACTGCAAAGTCTGTTTGTCTACAAACTAAAGGTATTAACAGTTAAAGCAACACTATAAACTAGCTTAACTGACTAGTAGAAACAGTCGGTATTTTTAACGAATGGCGGGGACAAGTTTGACCCACGCGACACCTCACGGTAGAAGCTAGTGGTCACCTGTATTCTTCTTTTATCCCGGAGTCCGTGCTTTAGCTGAGCTAACGCCAGCTGTTTGTCTGCGCCCTTGTTGTTAGCATAGCTCACGTCTTTCTCACGCTTCTCTCGCTACGTGGACGTCAGACTTGCCCCTCAAGTTGTGATAAGAAAGATAAGAAAGGTGCTTATCCCCGTCTGTGTCCTTCCGTTGTAGGCTCACAGGTACCTGGCAAGGACCTACACGTCTCGCCCGTCGCTCAATGTGAGTACAGTAACTGCCATTTGATAATCGTCACATTTAAATGTTTGCACTGCGCAGGTAATAATGCACGGTTTCAGGAGGTCGTCATCGTCAGTGCGGCGCGCACTCCAATGGGCTCGTTCAGAGGCAGCCTGGCGGCGGTGCCAGCCACCAGGCTGGGCTCCATTGCCATCAAGGGAGCCATAGACCAAGCAGGTATGTTGAGATGGAGGCTGTTCTCCTTCACTGAGGCCTGAGCATGGATGAGCTGATGCACCAGATGAAACGTTTCACCTGTACACATGAGTGCTGCATCTAAGGGGAGACGGCTGAGTTGACCTTGTGTTCCTGGTGTGTAGGAATCGCTCCAGAGGAGGTGAAGGAAGTCTACATGGGCAACGTGCTTCAGGCAGGAGAAGGGCAGGCGCCCACAAGACAAGCCTTGCTCGGAGCAGGTATCGCCCTCATTTCAAAGATTTGCATTGCAACTAAATATCGATGTCCAGAAATGTGTTGGCGAATCAGAAAAGATTGCACTTAAAGCAGGATCGTCAAGTTGTTTGGCTGTTGGAGCTGTCGGTTCCAGGAgatcattcattattataatgtatcgtccatgaatggaatatcgtgaaggaatcataaatgagttattgtgattgacaattaaatcctcaaagtggataaataatcatgaatatgcacatactgacacacatttctctagaaattatagagctcctgataaaatctgaaaaatactccatacttttcatttttcaagtatttgattaacaaaacaaaaacacgtgttttttattttaattattaatttattaaattaccgggaaacatgctacacctaagttaaatataaatcgttatcgagatatgaaaTtactagggctgtcaatcgattaaaacatttttgaaattcattaatcgcgattaaaagttttttcttcttctttttaaagacaaaacttcacacagagctgtgttttcaaagaggctccttcctataaagtgccagcgaggtatttaatatcgtggatgataaattgtttcttcagtgaaacatccagattagtaaaaaaaagaactatatttgagacaccaggtcctgtcatctttatcattgaacagcagcagaaccagtggccttggtaaactaactgacattcaaatatgtcctgttaaccctctggaggctgggctcatgttctccattttacaaaaaaatttaaattcaccttttaaaggcttttgcatatgacacatacccacgtgttatacatcaaacattccagaacaatctcatctctatataatgaggcacagttgtcctcgcgccgtgttctctggttctctgactgacaggcagctaatgagcctcacctgtgtggtgggaggtcctttgtgatttacttagtgttcattggttgtttttttttgctaaatgttgacagacaaacggattgacaaagcatggtgaaggtttcgtgtgacgagttctttccgcgctgcgtccccgacacgccccccccctctgtggctcggaggagcagacgggaggaaggagcggaggaggaaacccgactgattaatccaggagtttaaactgatgtctgctccgtattttcgcggagaactcatagttttaaaagcggaaacagtgtcaaatcgcactgccgctgtttgacactcaggggagtgaaaaaacttcaacgcacaccggaagtaaacaaagttccgttaaaatatttttgtgcgttaatcgcagccaaattaatcgcatagattaacgcgttaacgctgacagccctaGAAATTACCTATTTTGTGAGAAGATTGTGAGCAGCCTTATCTTTAAGCAGCTAATGGGTTCTGATTCTCTTTAAATTCAAAACTTGAATACTGCCCTATATGCAATCAAAAAGCTGGCAGCTCAAAGGTGTCACAAGGTTGATCTCCAGTTGCTTGTATGTCATTATTAATATTAAAGCAAGGTTGGAAGCCAATGCAATATAAATAACAGAAATGATTGACGGTTCACTCTGAGTTAATATTGTATCGTTATGAAATATGCAaTTCCCCTGTGCCAGACTGACGTACAAATGCAGAACTGAGTGATGGTCAAGATAATATTGGTGATATCTATTAATCTTTTGCCAATGCTAATGTGTCTGTTTCTATCTTCAGGCTTGACTCTTGGCACTCCAGCAACCACCATCAACAAAGTCTGTGCCTCCGGGATGAAGTCCATCATGCTGGCAGCCCAGAGTCTAATGTGTGGACACCAGGTAGCATCAGCTTTGAATACGCACTCCTTTCTGCTCACTTGAATTAAAGTACAAACACAAATCTGATCCCTGGCaagagccagaacattacattacacgtcatttagctgactcttttatccaaagtgacttacaatcctgttacattcatacaccgtagacgcagctacagggagcaattcagggttaagtgtcttgctcaaggacacatcaactagggtggggattgaacctcaaaccccctgattgaaaCTTTGTTGTGACCAAAAACAAGCCTTGTTGTCCATAAGATGTGATTATTGCAAGCTGTGACAGTGTGGTCATCGTGGTCACAGCTTTCAGTTCTCGGACAGAGTTGCTGAAATTAACAAATCCTATCAAACATAATAAGATACAGAAGAAATTAACTGATAGGAACACAAGCTGCTGCTGTGTATAATGTGTgATCTCAGGACGTGATGGTGGCAGGAGGCATGGAGAGCATGTCCAACGTACCTTACGTGATGACCAGAGATACCCCGGCCTACGGAGGTGTAATGGTGGAAGACCTCATTGTCAAGGATGGACTCACTGACGTCTATAACAAATTCCACATGGTAACTATCGAGCTCCTGTTTAATATCTAATATCACCACGTCATATAGTTTTACTCTTCTTGGAGATGTCATTTGAATGCATGTATCTCATAATAACATTTTGAGTTGAATagtggtgttctgttattggacttctgtgctagccacggcttgtctataacgaacaccatgttcgttatgggggggggggtttcgcaccaaatccctggcagaggccgctaaggttgttaaaaagctccttggtggcaaggcgccgggcgtggatgagatccgccctgagatgctgaaggcgctggacattgttgggctgtcttggctgacacgcctcttcaatgtcgcgtgggggtcaggaacagtgcccgtggactggcagaccggggtggtggttcccattttcaaaaatggggaccggagagtgtgctcgaactatcgtggaatcacacttctcagcctccctgggaaagtttatgccagggtcctggaaaggaggctccgaccgctggtcgaacctcggattcaagaccagcagtgcggattccgtcccggtcgtggaactgtggaccagctcttcaccctcgcaagggtcctcgaggggtcctgggagtttgcccaaccagtcgtcatgtgttttgtagacttggagaaagctttcgaccgggtccctcgggagttgttgtggggggtgctgcgggggtatggggttccggacccgttgctacgggctatccggtctctgtacgcctgcagtaggagctgtgttcgcatcctcggcagtaagtcagacacgttcccggtgggtgttggtctccgccagggctgccctttatcaccggtcctgtttgtgattttcatggacaggatatctaggcgcagcctgggggtggagcaggtcaggtttgggggtcttgggatcgcctctcttctgtttgcagatgatgtggtcctgttagcatcctcagaccatgacctccggcactcactgaggcgtttgctgccgagtgtgaagcggcaggatgagagtcagcaccgccaaatctgaggccatggtgctctgccggaaaccgtggattgctccctccaggtggggacagagttcctgccccaagcgaaggagttcaagtatctcggggtcttgttcacgagtgagggtaagatggagtgggagatcgacaggcggatcggtgcagctgcagcagtaaaacaggcgctgtaccggtctgtcttggtgaagagagagctgagccgaaaggcgaagctctcaatttactggtcggtctacgttccaatcctcacctatggtcacgaactttgggtagtgaccgaaagaacgaggtcgcgaatacaagcggccgaaatgagtttcctccgtagggtggccgggctcagccttagagatggggtaaggagctcggacatcaggagggagcttggagtcgagccgctactccttcgcatcgaaaggagtcagctgaggtggttcgggcatctgattcggatgcctcctggacgcctcccgttagaggttttccaggcacgtccaactgggaggagaccccggggaagacccaggacacgctggagagattatatctcccggctggtctgggaacgcctcgggatctcccagaatgcgctggaaagtgtcgcgggcgagagggaagtctgggtcaacctgctgggtctgctgcccccgcgacccgaccccggaataagcggatgagaatggatggatggatggatggatggatggaGTTGAATAGTATATAAAGTGAATCCTGCTTCTGTAATTGGATGCATTTTTGGTAAAAAAAAAAAAGGAGTTTGGTTTAGAGGTAATGCCTGAGGTGACTATGGAAACCAATGAAATAATAGTGTATAAGTAAAGGAGCCCAGTTTTATTTGATTAACTTTTTTTAGGAAGCATGGTTTTATGTTTTTGTTTATGCTTGTATATAAAAATCTTTGACATGATAAATTAGTGAAAGGTGAAAATGTATCTGTTTCTTAACTACGAGTTGCATGTAAATGAATGATGTGTATATTCTACCCATACATGAGCATGTAGCTGCCACATACATGTGTGCGGAACAAACAAAACATCTTTTCTTGATGCGTTGTGCGTTTACGGAGCACGAGGTGGAGCAGGATCTACACATTTAAACTGGTCGGTTTTAATTTCTGTTGCTTCGGCCTCGATTTCTTTCACAGGGCAACTGTGCAGAGAACACAGCCAAGAACAGCAGCATCACCAGGGAGGAGCAGGACGCCTACGCCATCGGCTCGTACAGCCGCAGCAAAGAGGCGTTCATGTCCGGCGTGCTGGCCAAGGAGATCGTGCCGGTCAGCATTCCCCAGAGAGGTACAGCGAGTTGGTCTAGGGCCGCTGAATGTTTACTGAATATAGCCAAGCGTAGCTGATGTGGGTGTGGCTTTGCAGGCAAACCTGATGTGGTCGTGTCCGAGGATGAAGAGTGGAGGCGGGTCGACTTCAGCAAAGTTCCCAAACTGAGGGCTGTGTTCCAGAAAGAGAATGGTAACCATGCCGTTTCATTACTTCCATTTTGCAATTTTTTTTATGAATACTCTCCTGCTACAAAGGGGAAATTAATAACGGTAATCATTATTTTATTTGCTTTGTTCTCGTCTCCTTGTCTTCAGGCACCGTGACGGCGGCAAACGCCAGCACGCTGAACGACGGAGCAGCCGCGCTCGTTTTAATGACGGCCGATGCTGCACAGAGACTCAACGTCACGCCACTGGCAAGGATTGTctgtaagctttacacacacacacacacacacacacacatatacctacacacctactcacacagctacacctacttacacacacacacagatctgaaaatgaacgtttgaCACACCGCAGATCTACAGATAAATCGTGAGTCGTGACACTGTTGTGTTTTATTTATTGAAGTCAATAGTCAGAATCTGGTTTGTTGAAAGCAATAAAGGTTTGTTGGATGTGAGTTAAGGCAGTTAGAACAGTGTTTTATCTATTTGCCACATAATTAAACAGGACCTTTTTAATTTGTCATAATAATTAAAACATGCATGATTGATGTGCTTTTCTCCATAGCTTTTGCTGATGCTGCTGTTGCACCCATTGATTTCCCCATTGCTCCTGCATTCGCTATCCCAAAGGTGAGTACATGTAAAAAGTACCTTTTTAGTAATAGTTGGTGTGATCTAATACTTATATTGACTAAATAAACCTAACTATTGTACAAAATATCCTCAAGCTGTTGACATGATTTTTTATTTTATCGCTGATATGATCCGTCACAGGAGACATTTGTCAATTTCTGTGCTGACCACGCCAGATAAAACGGTTTGGTCCACTGATCTTAGCTAACGAGAAAGAGGAGAGATCTAATGGACTGCTTAGTGTTTAGCCAGTCCGTGTATTTTAACCATCTGGGGGTCACAACACAATCGGCAAAGGATCTGGAACACTCGTACCCTCACTGACATGTGGAGGGAATAGCTTGAATATTTGAGTCATGAAAGGATCGCATTTTGAACAACTCTTTTCGCCGATGCATTATGAAATGCACGGATTGGCTCCAATATGATTCCtgtgtgtgtgtgtgtgtgtgtgtgtCAGGTCCTGGCTGCAGCAGGGTTGAAGAAGGAGGATATCACCATGTGGGAGATCAATGAAGCCTTCAGCGTGGTCGTGCTGGCCAACATCAAGATGTTGGGCATCGACCCCGCGAAAGTCAATGTGAACGGTGGAGCCGTGTCACTGGGACACCCCATCGGGTAAGCAGCCGAGAGGGACGCACACCGCCTTTCTGGGCCGGGAAAGAACAAAAACACGACCACTTCTCCTGGGAAGAGAGGCGTTCTCCAAAAGTATCTTTTTGTTTTTACTTTCTTTTGACTTGGAAGGGATTTTAGTTTTGACATCTTTTGATCTGATCCAGTAAGTAAGAGACCAAAGAAGttacattacatttagctgaagcttttatccaaagcgacttacaatcctgttacatttatacaccgtagacgcacagcttcagggagcaattcagggtcaagtgtattgctcaaggacacatcgactagggcagggattgaacctccaacccccgattgaaagacggacctgttacccgctgacccatagtcgcACCATGTTCATCCCGAAATAACCCTTTTCAAAAAAGATATACATGCATTCCAGGCGCGTGTTAAATCGTTCCTCTCCATAGGTAGTTGGTTTGGGAGGACTGCAAATTAGCATTCACTCTGTATTTCTTTACTGGTACAATTATGTTGTACTTGTAATAAAGTTTATTTTTATTTTTCTTTACAACACATTTTTGCTTCAAAATGACCTTTTGGCTTACATTAAGTATTCATGTTTTGTAATTGTGAATTTTAATTGCAAGATATAACTATATACAGAACATGTTATGGATCACTGATGCTGTATTTGATCTTTCTCCTGCCAGGATGTCTGGGGCGAGAATTGTGGGTCACATGGCGCACAACCTCAAGTCGGGCCAGTACGGACTGGCGAGCATCTGCAATGGAGGAGGTGGAGCGTCGTGTATTCTGATCCAGAAATTGATGTCATCCAGTGGACTTTTAACCTTGCGCACGCAATTTTGCAAACGCCTGGCTCACAGGTACCTGGCAAGGACCTACACGTCTCGCCCGTCGCTCAATGAGGTCGTCATCGTCAGTGCGGCGCGCACTCCAATGGGCTCGTTCAGAGGCAGCCTGGCGGCGGTGCCAGCCACCAGGCTGGGCTCCATTGCCATCAAGGGAGCCATAGACCAAGCAGGAATCGCTCCAGAGGAGGTGAAGGAAGTCTACATGGGCAACGTGCTTCAGGCAGGAGAAGGGCAGGCGCCCACAAGACAAGCCTTGCTCGGAGCAGGCTTGACTCTTGGCACTCCAGCAACCACCATCAACAAAGTCTGTGCCTCCGGGATGAAGTCCATCATGCTGGCAGCCCAGAGTCTAATGTGTGGACACCAGGACGTGATGGTGGCAGGAGGCATGGAGAGCATGTCCAACGTACCTTACGTGATGACCAGAGATACCCCGGCCTACGGAGGTGTAATGGTGGAAGACCTCATTGTCAAGGATGGACTCACTGACGTCTATAACAAATTCCACATGGGCAACTGTGCAGAGAACACAGCCAAGAACAGCAGCATCACCAGGGAGGAGCAGGACGCCTACGCCATCGGCTCGTACAGCCGCAGCAAAGAGGCGTTCATGTCCGGCGTGCTGGCCAAGGAGATCGTGCCGGTCAGCATTCCCCAGAGAGGCAAACCTGATGTGGTCGTGTCCGAGGATGAAGAGTGGAGGCGGGTCGACTTCAGCAAAGTTCCCAAACTGAGGGCTGTGTTCCAGAAAGAGAATGGCACCGTGACGGCGGCAAACGCCAGCACGCTGAACGACGGAGCAGCCGCGCTCGTTTTAATGACGGCCGATGCTGCACAGAGACTCAACGTCACGCCACTGGCAAGGATTGTctCTTTTGCTGATGCTGCTGTTGCACCCATTGATTTCCCCATTGCTCCTGCATTCGCTATCCCAAAGGTCCTGGCTGCAGCAGGGTTGAAGAAGGAGGATATCACCATGTGGGAGATCAATGAAGCCTTCAGCGTGGTCGTGCTGGCCAACATCAAGATGTTGGGCATCGACCCCGCGAAAGTCAATGTGAACGGTGGAGCCGTGTCACTGGGACACCCCATCGGGATGTCTGGGGCGAGAATTGTGGGTCACATGGCGCACAACCTCAAGTCGGGCCAGTACGGACTGGCGAGCATCTGCAATGGAGGAGGTGGAGCGTCGTGTATTCTGATCCAGAAATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00108	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002155	Family	Thiolase	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR020613	Conserved_site	Thiolase, conserved site	Interproscan
IPR020615	Active_site	Thiolase, acyl-enzyme intermediate active site	Interproscan
IPR020616	Domain	Thiolase, N-terminal	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18919	ACETYL-COA C-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003985	Molecular Function	acetyl-CoA C-acetyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-